Wall clock time and date at job start Tue Mar 31 2020 18:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00600 * 2 1 4 4 H 1.48496 * 109.46872 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47303 * 119.99727 * 3 2 1 6 6 H 1.48500 * 109.47315 * 240.00115 * 3 2 1 7 7 C 1.38817 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00093 * 196.68436 * 7 2 1 9 9 N 1.36941 * 119.99873 * 16.68459 * 7 2 1 10 10 C 1.44456 * 118.51145 * 206.74249 * 9 7 2 11 11 C 1.54882 * 109.32477 * 268.93216 * 10 9 7 12 12 C 1.47688 * 109.67840 * 290.10293 * 11 10 9 13 13 O 1.42560 * 113.66726 * 60.80250 * 12 11 10 14 14 C 1.40531 * 113.54299 * 272.24274 * 13 12 11 15 15 H 1.08997 * 109.40182 * 335.16866 * 14 13 12 16 16 C 1.52995 * 109.40680 * 215.32565 * 14 13 12 17 17 N 1.46505 * 109.46970 * 65.00015 * 16 14 13 18 18 C 1.34772 * 120.00019 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00021 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99835 * 179.97438 * 18 17 16 21 21 C 1.50706 * 109.47078 * 179.97438 * 20 18 17 22 22 C 1.38828 * 120.35125 * 90.00261 * 21 20 18 23 23 C 1.38382 * 118.48203 * 179.97438 * 22 21 20 24 24 C 1.38921 * 119.11317 * 359.97438 * 23 22 21 25 25 O 1.35676 * 119.68319 * 180.02562 * 24 23 22 26 26 N 1.32242 * 120.62689 * 359.97438 * 24 23 22 27 27 C 1.31959 * 121.65445 * 359.77591 * 26 24 23 28 28 C 1.48179 * 118.51050 * 26.47305 * 9 7 2 29 29 H 0.97002 * 119.99054 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.50088 * 28.88773 * 10 9 7 31 31 H 1.08998 * 109.49625 * 148.95194 * 10 9 7 32 32 H 1.08991 * 109.43383 * 50.16387 * 11 10 9 33 33 H 1.09001 * 109.43589 * 170.04012 * 11 10 9 34 34 H 1.09000 * 108.64353 * 181.88067 * 12 11 10 35 35 H 1.09000 * 108.64697 * 299.71629 * 12 11 10 36 36 H 1.08996 * 109.47576 * 184.99424 * 16 14 13 37 37 H 1.08997 * 109.47134 * 305.00139 * 16 14 13 38 38 H 0.97001 * 120.00092 * 359.97438 * 17 16 14 39 39 H 1.08992 * 109.47613 * 300.00086 * 20 18 17 40 40 H 1.08997 * 109.46867 * 60.00228 * 20 18 17 41 41 H 1.07997 * 120.75924 * 359.95346 * 22 21 20 42 42 H 1.08008 * 120.43759 * 179.97438 * 23 22 21 43 43 H 0.96698 * 113.99414 * 90.00096 * 25 24 23 44 44 H 1.07997 * 119.58868 * 180.26348 * 27 26 24 45 45 H 1.09006 * 109.23283 * 259.08267 * 28 9 7 46 46 H 1.08994 * 109.23474 * 18.46013 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 1.2855 2.7464 0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0561 -1.2221 0.2680 9 7 1.3687 -2.3630 -0.3415 10 6 1.8647 -3.6086 0.1963 11 6 2.9030 -4.2119 -0.7818 12 6 2.2205 -4.6797 -2.0052 13 8 1.5458 -3.6442 -2.7156 14 6 0.2276 -3.4303 -2.2783 15 1 -0.1540 -4.3421 -1.8189 16 6 -0.6507 -3.0577 -3.4744 17 7 -0.7270 -4.1933 -4.3968 18 6 -1.4508 -4.0941 -5.5293 19 8 -2.0393 -3.0649 -5.7847 20 6 -1.5287 -5.2622 -6.4785 21 6 -2.3939 -4.8952 -7.6566 22 6 -1.8319 -4.3165 -8.7864 23 6 -2.6622 -3.9956 -9.8459 24 6 -4.0217 -4.2623 -9.7441 25 8 -4.8463 -3.9529 -10.7762 26 7 -4.5197 -4.8158 -8.6512 27 6 -3.7527 -5.1374 -7.6267 28 6 0.1936 -2.2838 -1.2407 29 1 -0.4849 0.8401 0.0004 30 1 2.3374 -3.4257 1.1612 31 1 1.0363 -4.3055 0.3234 32 1 3.6381 -3.4514 -1.0448 33 1 3.4064 -5.0521 -0.3035 34 1 2.9606 -5.1307 -2.6662 35 1 1.4936 -5.4433 -1.7284 36 1 -1.6520 -2.8053 -3.1254 37 1 -0.2184 -2.1998 -3.9893 38 1 -0.2559 -5.0164 -4.1928 39 1 -0.5274 -5.5145 -6.8272 40 1 -1.9612 -6.1202 -5.9638 41 1 -0.7710 -4.1208 -8.8371 42 1 -2.2585 -3.5438 -10.7401 43 1 -4.9537 -4.6656 -11.4209 44 1 -4.1941 -5.5920 -6.7521 45 1 -0.7180 -2.3585 -0.6477 46 1 0.2044 -1.3268 -1.7623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149983551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:03 Heat of formation + Delta-G solvation = -87.020032 kcal Electronic energy + Delta-G solvation = -28677.771439 eV Core-core repulsion = 24567.544234 eV Total energy + Delta-G solvation = -4110.227206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60999 -40.76883 -40.01973 -38.10393 -36.87149 -35.95078 -34.29335 -34.04957 -32.99138 -32.58029 -30.44454 -28.61715 -27.05283 -26.77940 -24.72879 -24.35329 -23.28388 -22.34673 -21.61809 -21.11352 -19.80849 -18.85704 -18.15375 -17.96458 -17.72827 -17.38667 -16.97020 -16.78582 -16.26006 -16.15065 -15.93718 -15.59344 -15.28580 -15.20904 -14.70941 -14.50900 -14.20926 -14.17521 -13.99651 -13.81990 -13.76450 -13.43599 -13.14943 -13.03493 -12.73268 -12.70616 -12.58203 -12.47283 -12.29420 -12.00821 -11.79381 -11.43550 -11.33378 -11.08948 -10.80080 -10.55751 -10.43603 -10.24320 -10.09382 -9.75217 -8.66876 -7.86952 -5.31454 -0.02888 0.26588 1.42815 1.46721 1.52274 1.69130 2.16803 2.50696 2.62185 2.82851 2.95088 3.26960 3.59922 3.61434 3.75752 3.96597 3.97789 4.04389 4.07929 4.16576 4.25576 4.29003 4.36597 4.48622 4.57375 4.61450 4.65231 4.73443 4.78723 4.81694 4.90473 4.91042 4.99673 5.17051 5.23929 5.24558 5.28333 5.44333 5.53761 5.59562 5.61812 5.70353 6.39216 6.60317 6.61891 6.63386 6.93901 7.16774 7.32149 7.93716 8.31004 9.17397 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002347 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.502060 B =11929.372617 C =12933.176644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.049 4.049 3 Si 0.958 3.042 4 H -0.296 1.296 5 H -0.273 1.273 6 H -0.284 1.284 7 C -0.260 4.260 8 H 0.061 0.939 9 N -0.602 5.602 10 C 0.147 3.853 11 C -0.171 4.171 12 C 0.068 3.932 13 O -0.376 6.376 14 C 0.079 3.921 15 H 0.078 0.922 16 C 0.137 3.863 17 N -0.706 5.706 18 C 0.507 3.493 19 O -0.590 6.590 20 C -0.083 4.083 21 C -0.131 4.131 22 C -0.052 4.052 23 C -0.187 4.187 24 C 0.288 3.712 25 O -0.496 6.496 26 N -0.536 5.536 27 C 0.123 3.877 28 C 0.171 3.829 29 H 0.248 0.752 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.418 0.582 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.419 0.581 44 H 0.173 0.827 45 H 0.011 0.989 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -20.053 -16.663 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.787 3.213 4 H -0.222 1.222 5 H -0.199 1.199 6 H -0.210 1.210 7 C -0.391 4.391 8 H 0.079 0.921 9 N -0.325 5.325 10 C 0.020 3.980 11 C -0.211 4.211 12 C -0.008 4.008 13 O -0.295 6.295 14 C 0.019 3.981 15 H 0.095 0.905 16 C 0.012 3.988 17 N -0.359 5.359 18 C 0.295 3.705 19 O -0.470 6.470 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.078 4.078 23 C -0.208 4.208 24 C 0.110 3.890 25 O -0.306 6.306 26 N -0.255 5.255 27 C -0.034 4.034 28 C 0.045 3.955 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.255 0.745 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.179 0.821 42 H 0.179 0.821 43 H 0.279 0.721 44 H 0.190 0.810 45 H 0.029 0.971 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.982 -18.725 -16.718 25.181 hybrid contribution 1.052 1.077 0.336 1.543 sum -0.930 -17.647 -16.382 24.097 Atomic orbital electron populations 1.70174 1.06381 1.25660 1.55736 1.25691 0.96010 1.01222 1.01512 0.85481 0.77728 0.79932 0.78186 1.22187 1.19888 1.21021 1.19392 0.92723 0.86590 1.40386 0.92113 1.43816 1.33582 1.02681 1.52381 1.20922 0.95248 0.86923 0.94874 1.22150 0.99692 1.01001 0.98229 1.21584 0.96926 0.88353 0.93946 1.87444 1.25637 1.58230 1.58171 1.22764 0.83407 0.98848 0.93099 0.90462 1.21135 0.98656 0.89435 0.89624 1.45757 1.51313 1.17340 1.21454 1.21291 0.77598 0.89763 0.81817 1.90753 1.47045 1.33466 1.75775 1.20634 1.03381 0.96410 0.91869 1.20549 0.95447 1.00976 0.96397 1.21767 1.01796 0.92788 0.91423 1.22312 0.92551 1.03571 1.02343 1.19475 0.87460 0.94178 0.87916 1.84748 1.67918 1.43517 1.34439 1.67126 1.42025 1.14069 1.02323 1.22709 0.89967 0.95271 0.95437 1.21463 0.88233 0.96246 0.89594 0.94307 0.94290 0.93540 0.94050 0.88514 0.88368 0.91598 0.91362 0.93715 0.74530 0.84140 0.83860 0.82143 0.82146 0.72076 0.80977 0.97084 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 11.09 21.65 0.24 -55.57 16 2 C -0.05 -2.78 4.85 84.86 0.41 -2.37 16 3 Si 0.96 46.23 29.59 68.60 2.03 48.26 16 4 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 5 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.26 -14.36 9.42 84.03 0.79 -13.57 16 8 H 0.06 3.31 7.88 -2.91 -0.02 3.29 16 9 N -0.60 -29.35 2.58 -695.72 -1.79 -31.15 16 10 C 0.15 5.61 5.68 87.40 0.50 6.11 16 11 C -0.17 -5.11 6.04 29.57 0.18 -4.94 16 12 C 0.07 1.72 6.04 70.32 0.42 2.14 16 13 O -0.38 -12.54 9.78 -144.95 -1.42 -13.96 16 14 C 0.08 2.67 2.35 31.16 0.07 2.74 16 15 H 0.08 2.17 7.21 -2.39 -0.02 2.15 16 16 C 0.14 4.43 5.24 86.38 0.45 4.88 16 17 N -0.71 -15.85 5.50 -463.06 -2.54 -18.39 16 18 C 0.51 11.94 7.82 87.66 0.69 12.62 16 19 O -0.59 -20.86 16.03 -3.03 -0.05 -20.91 16 20 C -0.08 -1.00 5.85 29.11 0.17 -0.83 16 21 C -0.13 -2.33 4.39 -19.77 -0.09 -2.41 16 22 C -0.05 -0.89 9.85 22.45 0.22 -0.66 16 23 C -0.19 -3.37 10.04 22.47 0.23 -3.14 16 24 C 0.29 6.40 7.74 84.79 0.66 7.06 16 25 O -0.50 -9.46 13.56 -89.93 -1.22 -10.68 16 26 N -0.54 -13.44 10.39 -308.96 -3.21 -16.65 16 27 C 0.12 2.55 10.85 84.63 0.92 3.46 16 28 C 0.17 8.03 4.53 86.62 0.39 8.43 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.04 1.54 7.97 -2.39 -0.02 1.53 16 31 H 0.05 1.59 8.10 -2.39 -0.02 1.58 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.07 1.31 7.28 -2.39 -0.02 1.29 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.42 6.24 8.46 -92.71 -0.78 5.45 16 39 H 0.14 0.82 8.09 -2.39 -0.02 0.80 16 40 H 0.14 0.75 8.09 -2.39 -0.02 0.73 16 41 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 43 H 0.42 3.17 9.06 -74.06 -0.67 2.50 16 44 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 45 H 0.01 0.57 8.02 -2.38 -0.02 0.55 16 46 H 0.04 2.10 6.30 -2.39 -0.02 2.09 16 Total: -1.00 -83.54 380.18 -2.39 -85.93 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -0.44 Total: 13.61 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 6.01 Total: 19.52 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -7.31 Total: -121.76 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -2.69 Total: -45.55 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -83.54 -2.39 -85.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149983551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.087 kcal (2) G-P(sol) polarization free energy of solvation -83.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds