Wall clock time and date at job start Tue Mar 31 2020 18:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00600 * 2 1 4 4 H 1.48496 * 109.46872 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47303 * 119.99727 * 3 2 1 6 6 H 1.48500 * 109.47315 * 240.00115 * 3 2 1 7 7 C 1.38817 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00093 * 196.68436 * 7 2 1 9 9 N 1.36941 * 119.99873 * 16.68459 * 7 2 1 10 10 C 1.44456 * 118.51145 * 206.74249 * 9 7 2 11 11 C 1.54882 * 109.32477 * 268.93216 * 10 9 7 12 12 C 1.47688 * 109.67840 * 290.10293 * 11 10 9 13 13 O 1.42560 * 113.66726 * 60.80250 * 12 11 10 14 14 C 1.40531 * 113.54299 * 272.24274 * 13 12 11 15 15 H 1.08997 * 109.40182 * 335.16866 * 14 13 12 16 16 C 1.52995 * 109.40680 * 215.32565 * 14 13 12 17 17 N 1.46505 * 109.46970 * 65.00015 * 16 14 13 18 18 C 1.34772 * 120.00019 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00021 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99835 * 179.97438 * 18 17 16 21 21 N 1.46501 * 109.46758 * 179.97438 * 20 18 17 22 22 C 1.35764 * 119.62845 * 269.72514 * 21 20 18 23 23 C 1.35351 * 120.70392 * 179.76319 * 22 21 20 24 24 C 1.40190 * 119.94746 * 0.51261 * 23 22 21 25 25 C 1.36403 * 119.26472 * 359.75095 * 24 23 22 26 26 C 1.34658 * 119.62291 * 90.00655 * 21 20 18 27 27 O 1.22058 * 119.98782 * 359.97438 * 26 21 20 28 28 C 1.48179 * 118.51050 * 26.47305 * 9 7 2 29 29 H 0.97002 * 119.99054 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.50088 * 28.88773 * 10 9 7 31 31 H 1.08998 * 109.49625 * 148.95194 * 10 9 7 32 32 H 1.08991 * 109.43383 * 50.16387 * 11 10 9 33 33 H 1.09001 * 109.43589 * 170.04012 * 11 10 9 34 34 H 1.09000 * 108.64353 * 181.88067 * 12 11 10 35 35 H 1.09000 * 108.64697 * 299.71629 * 12 11 10 36 36 H 1.08996 * 109.47576 * 184.99424 * 16 14 13 37 37 H 1.08997 * 109.47134 * 305.00139 * 16 14 13 38 38 H 0.97001 * 120.00092 * 359.97438 * 17 16 14 39 39 H 1.08992 * 109.47613 * 300.00086 * 20 18 17 40 40 H 1.08997 * 109.46867 * 60.00228 * 20 18 17 41 41 H 1.08007 * 119.64687 * 0.02562 * 22 21 20 42 42 H 1.08001 * 120.02525 * 180.23763 * 23 22 21 43 43 H 1.07998 * 120.36985 * 179.76324 * 24 23 22 44 44 H 1.07997 * 120.34490 * 180.02562 * 25 24 23 45 45 H 1.09006 * 109.23283 * 259.08267 * 28 9 7 46 46 H 1.08994 * 109.23474 * 18.46013 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 1.2855 2.7464 0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0561 -1.2221 0.2680 9 7 1.3687 -2.3630 -0.3415 10 6 1.8647 -3.6086 0.1963 11 6 2.9030 -4.2119 -0.7818 12 6 2.2205 -4.6797 -2.0052 13 8 1.5458 -3.6442 -2.7156 14 6 0.2276 -3.4303 -2.2783 15 1 -0.1540 -4.3421 -1.8189 16 6 -0.6507 -3.0577 -3.4744 17 7 -0.7270 -4.1933 -4.3968 18 6 -1.4508 -4.0941 -5.5293 19 8 -2.0393 -3.0649 -5.7847 20 6 -1.5287 -5.2622 -6.4785 21 7 -2.3698 -4.9054 -7.6237 22 6 -3.7046 -5.1490 -7.5779 23 6 -4.5027 -4.8239 -8.6216 24 6 -3.9501 -4.2388 -9.7695 25 6 -2.6080 -3.9996 -9.8158 26 6 -1.8093 -4.3448 -8.7122 27 8 -0.6070 -4.1362 -8.7403 28 6 0.1936 -2.2838 -1.2407 29 1 -0.4849 0.8401 0.0004 30 1 2.3374 -3.4257 1.1612 31 1 1.0363 -4.3055 0.3234 32 1 3.6381 -3.4514 -1.0448 33 1 3.4064 -5.0521 -0.3035 34 1 2.9606 -5.1307 -2.6662 35 1 1.4936 -5.4433 -1.7284 36 1 -1.6520 -2.8053 -3.1254 37 1 -0.2184 -2.1998 -3.9893 38 1 -0.2559 -5.0164 -4.1928 39 1 -0.5274 -5.5145 -6.8272 40 1 -1.9612 -6.1202 -5.9638 41 1 -4.1349 -5.6033 -6.6975 42 1 -5.5638 -5.0191 -8.5719 43 1 -4.5800 -3.9801 -10.6077 44 1 -2.1639 -3.5493 -10.6912 45 1 -0.7180 -2.3585 -0.6477 46 1 0.2044 -1.3268 -1.7623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150699723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:26 Heat of formation + Delta-G solvation = -42.927686 kcal Electronic energy + Delta-G solvation = -29221.862829 eV Core-core repulsion = 25113.547610 eV Total energy + Delta-G solvation = -4108.315218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64290 -39.58795 -38.67468 -37.04024 -35.25878 -34.82100 -34.58105 -32.62884 -31.18984 -30.16538 -29.40770 -28.13327 -25.56955 -25.22857 -24.11210 -23.15849 -22.43422 -21.05347 -20.56442 -19.72080 -18.01369 -17.56869 -17.52803 -16.95365 -16.55909 -16.30800 -15.80302 -15.42806 -15.31210 -14.93410 -14.84602 -14.52570 -14.31384 -14.02329 -13.65032 -13.42073 -13.10848 -12.80823 -12.59065 -12.51116 -12.37418 -12.25339 -12.13831 -12.04664 -11.78303 -11.16938 -10.86961 -10.74883 -10.71564 -10.62087 -10.25103 -10.13120 -10.05185 -9.96902 -9.81267 -9.67804 -9.02857 -8.88632 -8.40848 -8.18046 -6.70941 -5.79417 -3.22007 0.60959 1.70039 2.24006 2.50278 3.11942 3.40647 3.46981 3.49511 3.56288 4.23145 4.26051 4.34345 4.50929 4.56472 4.62855 4.79685 4.95316 5.03215 5.09578 5.12163 5.35861 5.42317 5.48079 5.59462 5.67914 5.70970 5.81753 5.87337 5.95546 6.04331 6.04551 6.18730 6.26143 6.26735 6.34708 6.42280 6.54162 6.74784 6.83874 6.95257 7.13556 7.42336 7.52687 7.81501 7.86615 7.93299 8.12906 8.45583 9.20591 9.87324 10.31427 11.28676 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.002601 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.227172 B =10763.210973 C =11548.227032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.257 4.257 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.157 3.843 11 C -0.184 4.184 12 C 0.079 3.921 13 O -0.359 6.359 14 C 0.056 3.944 15 H 0.048 0.952 16 C 0.125 3.875 17 N -0.715 5.715 18 C 0.497 3.503 19 O -0.528 6.528 20 C 0.070 3.930 21 N -0.480 5.480 22 C 0.143 3.857 23 C -0.235 4.235 24 C -0.016 4.016 25 C -0.241 4.241 26 C 0.518 3.482 27 O -0.548 6.548 28 C 0.166 3.834 29 H 0.255 0.745 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.400 0.600 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.160 0.840 42 H 0.145 0.855 43 H 0.134 0.866 44 H 0.148 0.852 45 H 0.038 0.962 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.993 -17.251 -13.239 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.306 5.306 10 C 0.029 3.971 11 C -0.225 4.225 12 C 0.002 3.998 13 O -0.277 6.277 14 C -0.004 4.004 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.366 5.366 18 C 0.281 3.719 19 O -0.404 6.404 20 C -0.056 4.056 21 N -0.190 5.190 22 C 0.016 3.984 23 C -0.258 4.258 24 C -0.038 4.038 25 C -0.263 4.263 26 C 0.320 3.680 27 O -0.430 6.430 28 C 0.040 3.960 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.234 0.766 39 H 0.148 0.852 40 H 0.139 0.861 41 H 0.178 0.822 42 H 0.163 0.837 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.056 0.944 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.663 -16.107 -13.538 22.754 hybrid contribution 0.534 0.404 0.390 0.775 sum -8.129 -15.703 -13.148 22.034 Atomic orbital electron populations 1.70019 1.05229 1.25723 1.53998 1.25005 0.95287 0.98418 1.00564 0.86386 0.78996 0.83359 0.78127 1.21614 1.20943 1.20955 1.19119 0.92701 0.85169 1.41669 0.91825 1.43565 1.33578 1.02004 1.51446 1.20668 0.93855 0.88087 0.94482 1.22301 1.01339 1.00790 0.98023 1.21302 0.95675 0.88580 0.94234 1.87459 1.25608 1.56828 1.57827 1.23226 0.82789 1.00285 0.94134 0.93427 1.21630 0.99994 0.88779 0.89426 1.45898 1.50787 1.18159 1.21801 1.20591 0.79820 0.89429 0.82079 1.90770 1.45143 1.30253 1.74249 1.21818 0.99711 0.97268 0.86784 1.45047 1.07710 1.50712 1.15536 1.21925 0.82324 0.94708 0.99449 1.20618 1.00641 1.09641 0.94860 1.21429 0.94826 0.90618 0.96934 1.22097 0.94570 1.09679 0.99977 1.17168 0.88968 0.79079 0.82762 1.90979 1.14756 1.55459 1.81812 1.21685 0.89562 0.95760 0.88965 0.93529 0.93115 0.95405 0.91092 0.92338 0.91501 0.94803 0.89995 0.90324 0.76623 0.85214 0.86112 0.82239 0.83726 0.84828 0.83466 0.94412 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.01 11.09 55.49 0.62 -25.39 16 2 C 0.01 0.16 4.85 -17.43 -0.08 0.08 16 3 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.26 -7.01 9.42 -15.06 -0.14 -7.16 16 8 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.27 2.58 -171.25 -0.44 -14.71 16 10 C 0.16 3.16 5.68 -4.14 -0.02 3.13 16 11 C -0.18 -3.12 6.04 -28.31 -0.17 -3.29 16 12 C 0.08 1.22 6.04 34.59 0.21 1.43 16 13 O -0.36 -6.68 9.78 -34.10 -0.33 -7.02 16 14 C 0.06 1.00 2.35 -25.86 -0.06 0.93 16 15 H 0.05 0.75 7.21 -51.93 -0.37 0.38 16 16 C 0.13 2.08 5.24 -4.04 -0.02 2.06 16 17 N -0.71 -9.36 5.50 -60.29 -0.33 -9.69 16 18 C 0.50 6.89 7.90 -10.98 -0.09 6.81 16 19 O -0.53 -9.79 16.43 5.56 0.09 -9.70 16 20 C 0.07 0.67 5.82 -5.19 -0.03 0.64 16 21 N -0.48 -5.29 2.07 -121.06 -0.25 -5.54 16 22 C 0.14 1.11 10.28 -16.84 -0.17 0.94 16 23 C -0.23 -1.63 10.01 -39.88 -0.40 -2.03 16 24 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 25 C -0.24 -2.68 9.99 -39.38 -0.39 -3.07 16 26 C 0.52 7.31 7.40 -15.45 -0.11 7.20 16 27 O -0.55 -9.92 16.64 4.87 0.08 -9.84 16 28 C 0.17 3.83 4.53 -2.24 -0.01 3.82 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 1.03 7.97 -51.93 -0.41 0.62 16 31 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.45 7.28 -51.93 -0.38 0.07 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.40 4.06 8.46 -40.82 -0.35 3.71 16 39 H 0.13 1.25 7.39 -51.93 -0.38 0.87 16 40 H 0.12 0.55 8.01 -51.93 -0.42 0.14 16 41 H 0.16 0.68 8.03 -52.48 -0.42 0.26 16 42 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.04 0.92 8.02 -51.93 -0.42 0.50 16 46 H 0.08 2.16 6.30 -51.93 -0.33 1.83 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -37.36 378.46 -8.62 -45.98 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.83 Total: 2.16 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -1.90 Total: 10.95 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.41 Total: -55.33 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.16 Total: -26.56 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.36 -8.62 -45.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150699723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.054 kcal (2) G-P(sol) polarization free energy of solvation -37.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds