Wall clock time and date at job start Tue Mar 31 2020 18:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00600 * 2 1 4 4 H 1.48496 * 109.46872 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47303 * 119.99727 * 3 2 1 6 6 H 1.48500 * 109.47315 * 240.00115 * 3 2 1 7 7 C 1.38817 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00093 * 196.68436 * 7 2 1 9 9 N 1.36941 * 119.99873 * 16.68459 * 7 2 1 10 10 C 1.44456 * 118.51145 * 206.74249 * 9 7 2 11 11 C 1.54882 * 109.32477 * 268.93216 * 10 9 7 12 12 C 1.47688 * 109.67840 * 290.10293 * 11 10 9 13 13 O 1.42560 * 113.66726 * 60.80250 * 12 11 10 14 14 C 1.40531 * 113.54299 * 272.24274 * 13 12 11 15 15 H 1.08997 * 109.40182 * 335.16866 * 14 13 12 16 16 C 1.52995 * 109.40680 * 215.32565 * 14 13 12 17 17 N 1.46505 * 109.46970 * 65.00015 * 16 14 13 18 18 C 1.34772 * 120.00019 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00021 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99835 * 179.97438 * 18 17 16 21 21 N 1.46501 * 109.46758 * 179.97438 * 20 18 17 22 22 C 1.35764 * 119.62845 * 269.72514 * 21 20 18 23 23 C 1.35351 * 120.70392 * 179.76319 * 22 21 20 24 24 C 1.40190 * 119.94746 * 0.51261 * 23 22 21 25 25 C 1.36403 * 119.26472 * 359.75095 * 24 23 22 26 26 C 1.34658 * 119.62291 * 90.00655 * 21 20 18 27 27 O 1.22058 * 119.98782 * 359.97438 * 26 21 20 28 28 C 1.48179 * 118.51050 * 26.47305 * 9 7 2 29 29 H 0.97002 * 119.99054 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.50088 * 28.88773 * 10 9 7 31 31 H 1.08998 * 109.49625 * 148.95194 * 10 9 7 32 32 H 1.08991 * 109.43383 * 50.16387 * 11 10 9 33 33 H 1.09001 * 109.43589 * 170.04012 * 11 10 9 34 34 H 1.09000 * 108.64353 * 181.88067 * 12 11 10 35 35 H 1.09000 * 108.64697 * 299.71629 * 12 11 10 36 36 H 1.08996 * 109.47576 * 184.99424 * 16 14 13 37 37 H 1.08997 * 109.47134 * 305.00139 * 16 14 13 38 38 H 0.97001 * 120.00092 * 359.97438 * 17 16 14 39 39 H 1.08992 * 109.47613 * 300.00086 * 20 18 17 40 40 H 1.08997 * 109.46867 * 60.00228 * 20 18 17 41 41 H 1.08007 * 119.64687 * 0.02562 * 22 21 20 42 42 H 1.08001 * 120.02525 * 180.23763 * 23 22 21 43 43 H 1.07998 * 120.36985 * 179.76324 * 24 23 22 44 44 H 1.07997 * 120.34490 * 180.02562 * 25 24 23 45 45 H 1.09006 * 109.23283 * 259.08267 * 28 9 7 46 46 H 1.08994 * 109.23474 * 18.46013 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 1.2855 2.7464 0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0561 -1.2221 0.2680 9 7 1.3687 -2.3630 -0.3415 10 6 1.8647 -3.6086 0.1963 11 6 2.9030 -4.2119 -0.7818 12 6 2.2205 -4.6797 -2.0052 13 8 1.5458 -3.6442 -2.7156 14 6 0.2276 -3.4303 -2.2783 15 1 -0.1540 -4.3421 -1.8189 16 6 -0.6507 -3.0577 -3.4744 17 7 -0.7270 -4.1933 -4.3968 18 6 -1.4508 -4.0941 -5.5293 19 8 -2.0393 -3.0649 -5.7847 20 6 -1.5287 -5.2622 -6.4785 21 7 -2.3698 -4.9054 -7.6237 22 6 -3.7046 -5.1490 -7.5779 23 6 -4.5027 -4.8239 -8.6216 24 6 -3.9501 -4.2388 -9.7695 25 6 -2.6080 -3.9996 -9.8158 26 6 -1.8093 -4.3448 -8.7122 27 8 -0.6070 -4.1362 -8.7403 28 6 0.1936 -2.2838 -1.2407 29 1 -0.4849 0.8401 0.0004 30 1 2.3374 -3.4257 1.1612 31 1 1.0363 -4.3055 0.3234 32 1 3.6381 -3.4514 -1.0448 33 1 3.4064 -5.0521 -0.3035 34 1 2.9606 -5.1307 -2.6662 35 1 1.4936 -5.4433 -1.7284 36 1 -1.6520 -2.8053 -3.1254 37 1 -0.2184 -2.1998 -3.9893 38 1 -0.2559 -5.0164 -4.1928 39 1 -0.5274 -5.5145 -6.8272 40 1 -1.9612 -6.1202 -5.9638 41 1 -4.1349 -5.6033 -6.6975 42 1 -5.5638 -5.0191 -8.5719 43 1 -4.5800 -3.9801 -10.6077 44 1 -2.1639 -3.5493 -10.6912 45 1 -0.7180 -2.3585 -0.6477 46 1 0.2044 -1.3268 -1.7623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150699723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:25 Heat of formation + Delta-G solvation = -70.795936 kcal Electronic energy + Delta-G solvation = -29223.071287 eV Core-core repulsion = 25113.547610 eV Total energy + Delta-G solvation = -4109.523676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.48082 -40.83342 -40.02966 -37.96546 -36.91718 -36.10268 -35.48141 -34.16336 -32.97892 -30.98200 -30.64593 -29.34468 -27.08741 -26.95451 -24.89033 -24.36979 -23.60999 -22.41372 -21.78731 -21.34405 -19.05036 -18.68496 -18.49931 -18.30512 -17.78139 -17.40988 -17.08844 -16.71062 -16.51898 -16.29897 -16.06555 -15.74004 -15.43652 -15.22314 -15.03173 -14.70814 -14.55918 -14.23851 -14.09363 -13.85805 -13.47111 -13.32019 -13.14180 -13.05374 -12.99277 -12.75472 -12.71235 -12.49322 -12.31917 -12.03144 -11.84094 -11.60705 -11.43503 -11.36427 -11.09628 -10.86103 -10.57408 -10.28122 -10.24467 -8.96701 -8.68592 -7.88956 -5.33026 -0.08110 0.94817 1.40194 1.41622 1.45493 1.48137 1.50558 2.11434 2.48986 2.74702 2.90975 3.24602 3.54879 3.58568 3.71245 3.79168 4.01936 4.05081 4.11677 4.16342 4.18790 4.24857 4.25777 4.38405 4.43524 4.53926 4.56448 4.60680 4.76696 4.83390 4.88263 5.04613 5.13764 5.18588 5.19986 5.23955 5.32752 5.40301 5.51329 5.59567 5.66546 5.68054 6.06129 6.37565 6.39571 6.57827 6.96466 7.09381 7.15177 7.91979 8.28913 9.15471 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.002601 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.227172 B =10763.210973 C =11548.227032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.047 4.047 3 Si 0.956 3.044 4 H -0.293 1.293 5 H -0.272 1.272 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.060 0.940 9 N -0.603 5.603 10 C 0.148 3.852 11 C -0.171 4.171 12 C 0.067 3.933 13 O -0.381 6.381 14 C 0.078 3.922 15 H 0.084 0.916 16 C 0.137 3.863 17 N -0.700 5.700 18 C 0.495 3.505 19 O -0.582 6.582 20 C 0.076 3.924 21 N -0.482 5.482 22 C 0.135 3.865 23 C -0.232 4.232 24 C 0.008 3.992 25 C -0.288 4.288 26 C 0.496 3.504 27 O -0.614 6.614 28 C 0.172 3.828 29 H 0.248 0.752 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.419 0.581 39 H 0.128 0.872 40 H 0.184 0.816 41 H 0.203 0.797 42 H 0.185 0.815 43 H 0.168 0.832 44 H 0.142 0.858 45 H 0.017 0.983 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 -20.841 -13.345 26.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.785 3.215 4 H -0.219 1.219 5 H -0.198 1.198 6 H -0.214 1.214 7 C -0.392 4.392 8 H 0.077 0.923 9 N -0.325 5.325 10 C 0.021 3.979 11 C -0.211 4.211 12 C -0.008 4.008 13 O -0.300 6.300 14 C 0.018 3.982 15 H 0.101 0.899 16 C 0.012 3.988 17 N -0.352 5.352 18 C 0.281 3.719 19 O -0.461 6.461 20 C -0.049 4.049 21 N -0.191 5.191 22 C 0.009 3.991 23 C -0.254 4.254 24 C -0.014 4.014 25 C -0.309 4.309 26 C 0.301 3.699 27 O -0.502 6.502 28 C 0.046 3.954 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.256 0.744 39 H 0.146 0.854 40 H 0.201 0.799 41 H 0.220 0.780 42 H 0.202 0.798 43 H 0.185 0.815 44 H 0.159 0.841 45 H 0.034 0.966 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.087 -19.784 -13.623 26.053 hybrid contribution 0.898 1.438 0.473 1.760 sum -9.189 -18.347 -13.150 24.371 Atomic orbital electron populations 1.70158 1.06277 1.25680 1.55631 1.25663 0.96042 1.01119 1.01445 0.85505 0.77803 0.80080 0.78093 1.21935 1.19775 1.21396 1.19382 0.92711 0.86668 1.40480 0.92256 1.43815 1.33632 1.02714 1.52340 1.20917 0.95248 0.86891 0.94799 1.22159 0.99761 1.01012 0.98205 1.21591 0.96964 0.88371 0.93922 1.87466 1.25878 1.58320 1.58347 1.22816 0.83238 0.99228 0.92953 0.89871 1.21207 0.99245 0.88880 0.89427 1.45643 1.50720 1.17698 1.21163 1.21396 0.78471 0.89949 0.82120 1.90749 1.47410 1.32655 1.75330 1.22023 1.00535 0.96724 0.85643 1.45110 1.09225 1.49840 1.14913 1.22785 0.80862 0.94138 1.01312 1.21208 1.02473 1.07906 0.93830 1.21893 0.93592 0.87677 0.98221 1.22106 0.96132 1.12885 0.99792 1.17668 0.88638 0.79318 0.84276 1.90918 1.17129 1.58878 1.83249 1.21448 0.88420 0.96011 0.89505 0.94244 0.94150 0.93210 0.94284 0.88400 0.88814 0.91225 0.90293 0.94358 0.74384 0.85413 0.79889 0.77972 0.79826 0.81450 0.84056 0.96552 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.77 11.09 21.65 0.24 -55.53 16 2 C -0.05 -2.71 4.85 84.86 0.41 -2.30 16 3 Si 0.96 46.92 29.59 68.60 2.03 48.95 16 4 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 5 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.26 -14.66 9.42 84.03 0.79 -13.87 16 8 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 9 N -0.60 -29.75 2.58 -695.72 -1.79 -31.55 16 10 C 0.15 5.72 5.68 87.40 0.50 6.21 16 11 C -0.17 -5.35 6.04 29.57 0.18 -5.17 16 12 C 0.07 1.83 6.04 70.32 0.42 2.25 16 13 O -0.38 -13.62 9.78 -144.95 -1.42 -15.04 16 14 C 0.08 2.70 2.35 31.16 0.07 2.77 16 15 H 0.08 2.32 7.21 -2.39 -0.02 2.30 16 16 C 0.14 4.63 5.24 86.38 0.45 5.09 16 17 N -0.70 -17.26 5.50 -463.06 -2.54 -19.80 16 18 C 0.49 13.23 7.90 87.66 0.69 13.92 16 19 O -0.58 -21.94 16.43 -3.03 -0.05 -21.99 16 20 C 0.08 1.26 5.82 85.63 0.50 1.76 16 21 N -0.48 -9.88 2.07 -655.06 -1.36 -11.24 16 22 C 0.13 1.61 10.28 83.42 0.86 2.46 16 23 C -0.23 -2.31 10.01 22.08 0.22 -2.09 16 24 C 0.01 0.11 10.10 22.32 0.23 0.33 16 25 C -0.29 -6.53 9.99 22.40 0.22 -6.31 16 26 C 0.50 14.43 7.40 84.82 0.63 15.06 16 27 O -0.61 -23.80 16.64 -5.50 -0.09 -23.89 16 28 C 0.17 8.17 4.53 86.62 0.39 8.56 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.04 1.61 7.97 -2.39 -0.02 1.59 16 31 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 1.44 7.28 -2.39 -0.02 1.42 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.42 7.11 8.46 -92.71 -0.78 6.33 16 39 H 0.13 2.30 7.39 -2.39 -0.02 2.28 16 40 H 0.18 0.69 8.01 -2.39 -0.02 0.67 16 41 H 0.20 0.56 8.03 -2.91 -0.02 0.54 16 42 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 43 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.02 0.83 8.02 -2.38 -0.02 0.81 16 46 H 0.04 2.01 6.30 -2.39 -0.02 2.00 16 Total: -1.00 -91.02 378.46 1.79 -89.23 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.21 Total: 12.17 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 6.57 Total: 28.69 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -5.46 Total: -118.13 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: -1.56 Total: -60.91 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -91.02 1.79 -89.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150699723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.434 kcal (2) G-P(sol) polarization free energy of solvation -91.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds