Wall clock time and date at job start Tue Mar 31 2020 18:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48502 * 109.47286 * 270.00109 * 3 2 1 5 5 H 1.48499 * 109.47453 * 30.00444 * 3 2 1 6 6 H 1.48510 * 109.47110 * 150.00419 * 3 2 1 7 7 C 1.38810 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08011 * 120.00094 * 160.85723 * 7 2 1 9 9 N 1.36936 * 120.00210 * 340.85220 * 7 2 1 10 10 C 1.43417 * 120.63703 * 155.75668 * 9 7 2 11 11 C 1.55335 * 116.23912 * 269.32969 * 10 9 7 12 12 C 1.55191 * 108.87331 * 319.46585 * 11 10 9 13 13 O 1.39649 * 110.56986 * 322.14520 * 12 11 10 14 14 C 1.42377 * 108.63697 * 101.16785 * 13 12 11 15 15 H 1.08993 * 108.62097 * 28.43012 * 14 13 12 16 16 C 1.53000 * 108.61932 * 146.34234 * 14 13 12 17 17 N 1.46498 * 109.47234 * 302.05859 * 16 14 13 18 18 C 1.34773 * 120.00227 * 180.02562 * 17 16 14 19 19 O 1.21291 * 120.00040 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00430 * 179.97438 * 18 17 16 21 21 N 1.46494 * 109.47622 * 180.02562 * 20 18 17 22 22 C 1.35776 * 119.62016 * 269.72772 * 21 20 18 23 23 C 1.35352 * 120.69742 * 179.75758 * 22 21 20 24 24 C 1.40199 * 119.94710 * 0.51263 * 23 22 21 25 25 C 1.36390 * 119.26622 * 359.74161 * 24 23 22 26 26 C 1.34649 * 119.63002 * 89.99478 * 21 20 18 27 27 O 1.22070 * 119.98423 * 0.02562 * 26 21 20 28 28 C 1.46923 * 113.68405 * 267.38296 * 14 13 12 29 29 H 0.97006 * 119.99809 * 359.97438 * 1 2 3 30 30 H 1.09005 * 108.12906 * 147.57532 * 10 9 7 31 31 H 1.08992 * 108.13034 * 31.09032 * 10 9 7 32 32 H 1.08996 * 109.57109 * 199.65127 * 11 10 9 33 33 H 1.08989 * 109.56871 * 79.28019 * 11 10 9 34 34 H 1.08996 * 109.25889 * 201.86444 * 12 11 10 35 35 H 1.09002 * 109.25799 * 82.42001 * 12 11 10 36 36 H 1.08994 * 109.47313 * 182.05313 * 16 14 13 37 37 H 1.09001 * 109.47025 * 62.05765 * 16 14 13 38 38 H 0.97001 * 120.00019 * 359.97438 * 17 16 14 39 39 H 1.09001 * 109.47059 * 299.99947 * 20 18 17 40 40 H 1.09004 * 109.47027 * 59.99343 * 20 18 17 41 41 H 1.07992 * 119.64767 * 359.97438 * 22 21 20 42 42 H 1.07994 * 120.02181 * 180.23036 * 23 22 21 43 43 H 1.08002 * 120.36275 * 179.76665 * 24 23 22 44 44 H 1.08005 * 120.34660 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.98982 * 176.18929 * 28 14 13 46 46 H 1.09001 * 109.99141 * 297.56375 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0455 -1.2279 -0.3073 9 7 1.3824 -2.3554 0.3879 10 6 1.8508 -3.6319 -0.0682 11 6 1.2207 -4.1644 -1.3844 12 6 -0.2989 -3.8494 -1.3769 13 8 -0.8267 -4.0093 -0.0939 14 6 -0.9705 -2.7245 0.5024 15 1 -1.1294 -1.9902 -0.2872 16 6 -2.2040 -2.7413 1.4075 17 7 -3.3838 -3.1042 0.6185 18 6 -4.5922 -3.1820 1.2100 19 8 -4.7030 -2.9520 2.3958 20 6 -5.8060 -3.5548 0.3983 21 7 -6.9872 -3.5698 1.2647 22 6 -7.3414 -4.7182 1.8966 23 6 -8.4258 -4.7554 2.7058 24 6 -9.2019 -3.6024 2.8895 25 6 -8.8473 -2.4512 2.2499 26 6 -7.7124 -2.4462 1.4211 27 8 -7.3843 -1.4228 0.8421 28 6 0.1915 -2.3109 1.3007 29 1 -0.4850 0.8401 0.0004 30 1 1.6624 -4.3631 0.7179 31 1 2.9293 -3.5661 -0.2110 32 1 1.3698 -5.2421 -1.4507 33 1 1.6906 -3.6758 -2.2379 34 1 -0.8096 -4.5254 -2.0625 35 1 -0.4545 -2.8213 -1.7039 36 1 -2.3483 -1.7527 1.8433 37 1 -2.0605 -3.4718 2.2036 38 1 -3.2953 -3.2878 -0.3299 39 1 -5.9491 -2.8242 -0.3978 40 1 -5.6620 -4.5435 -0.0375 41 1 -6.7497 -5.6104 1.7547 42 1 -8.6954 -5.6738 3.2060 43 1 -10.0706 -3.6256 3.5308 44 1 -9.4325 -1.5526 2.3793 45 1 0.0466 -1.2963 1.6718 46 1 0.3336 -2.9975 2.1353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150699724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:29 Heat of formation + Delta-G solvation = -39.238810 kcal Electronic energy + Delta-G solvation = -29560.110000 eV Core-core repulsion = 25451.954743 eV Total energy + Delta-G solvation = -4108.155257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55795 -39.54876 -38.68954 -36.96457 -35.08753 -34.78577 -34.46706 -32.25928 -31.27012 -30.08834 -29.20416 -28.14855 -25.45893 -25.27469 -24.03710 -23.08083 -22.40657 -20.88652 -20.34959 -19.63693 -17.92007 -17.45975 -17.45188 -17.04623 -16.51709 -16.07875 -15.55754 -15.30950 -15.08360 -14.93037 -14.62875 -14.41637 -14.24357 -14.05029 -13.81168 -13.24958 -13.09540 -12.89931 -12.56394 -12.45562 -12.20585 -12.06300 -12.02861 -11.90590 -11.43723 -11.25555 -10.87610 -10.76645 -10.64526 -10.51919 -10.20017 -10.05000 -9.99382 -9.77128 -9.68242 -9.54400 -8.86893 -8.79161 -8.53924 -8.11099 -6.85164 -5.94481 -3.33235 0.67737 1.76445 2.33729 2.65475 3.28207 3.32138 3.41228 3.42910 3.66124 4.34402 4.41965 4.43923 4.60577 4.68359 4.77811 4.89990 5.03455 5.09945 5.19407 5.20258 5.26275 5.65445 5.76764 5.77179 5.86724 5.88250 5.92567 6.09320 6.09911 6.27769 6.32963 6.36411 6.41061 6.47927 6.62048 6.65237 6.76734 6.84722 6.91632 6.91810 7.07217 7.28908 7.63258 7.69758 7.94368 8.06962 8.28974 8.30338 9.04505 9.72715 10.26710 11.14782 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.002785 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.696191 B =10052.177006 C =11109.817532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.161 3.839 11 C -0.172 4.172 12 C 0.067 3.933 13 O -0.371 6.371 14 C 0.061 3.939 15 H 0.108 0.892 16 C 0.122 3.878 17 N -0.707 5.707 18 C 0.497 3.503 19 O -0.536 6.536 20 C 0.069 3.931 21 N -0.478 5.478 22 C 0.145 3.855 23 C -0.237 4.237 24 C -0.017 4.017 25 C -0.242 4.242 26 C 0.518 3.482 27 O -0.548 6.548 28 C 0.143 3.857 29 H 0.256 0.744 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.402 0.598 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.160 0.840 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.147 0.853 45 H 0.104 0.896 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.874 -12.891 0.617 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.380 4.380 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.032 3.968 11 C -0.213 4.213 12 C -0.011 4.011 13 O -0.289 6.289 14 C 0.002 3.998 15 H 0.126 0.874 16 C -0.002 4.002 17 N -0.357 5.357 18 C 0.281 3.719 19 O -0.413 6.413 20 C -0.057 4.057 21 N -0.189 5.189 22 C 0.018 3.982 23 C -0.260 4.260 24 C -0.038 4.038 25 C -0.264 4.264 26 C 0.320 3.680 27 O -0.430 6.430 28 C 0.018 3.982 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.236 0.764 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.177 0.823 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.165 0.835 45 H 0.122 0.878 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -14.807 -12.051 1.198 19.129 hybrid contribution 0.587 0.881 -0.664 1.250 sum -14.220 -11.171 0.533 18.091 Atomic orbital electron populations 1.69843 1.05226 1.25849 1.54338 1.24903 0.95305 0.98378 1.00931 0.86278 0.79213 0.83492 0.77662 1.21507 1.21479 1.20574 1.19238 0.93623 0.85112 1.39988 0.91299 1.44092 1.33937 1.01494 1.51228 1.20370 0.95946 0.87809 0.92719 1.23580 0.96945 0.99055 1.01749 1.22352 0.93417 1.00774 0.84551 1.87499 1.83147 1.29115 1.29151 1.22218 0.93769 0.84907 0.98886 0.87437 1.21745 0.83237 1.00846 0.94324 1.45822 1.07051 1.69475 1.13396 1.20547 0.84585 0.78346 0.88454 1.90740 1.85531 1.49475 1.15540 1.21837 0.83584 1.06216 0.94047 1.45052 1.23643 1.10651 1.39507 1.21935 0.95527 0.89458 0.91311 1.20602 0.98884 1.00622 1.05882 1.21414 0.96940 0.91849 0.93635 1.22087 0.99695 1.00726 1.03880 1.17166 0.84591 0.82394 0.83877 1.90984 1.71811 1.30077 1.50112 1.20739 0.85422 1.01421 0.90631 0.93362 0.95062 0.94892 0.93185 0.92468 0.93077 0.91868 0.90256 0.91892 0.76383 0.85262 0.86091 0.82256 0.83791 0.84895 0.83516 0.87798 0.96236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.77 9.57 55.49 0.53 -23.24 16 2 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 3 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.48 9.62 -15.06 -0.14 -6.62 16 8 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 9 N -0.59 -13.90 2.61 -174.50 -0.46 -14.35 16 10 C 0.16 3.32 5.32 -4.43 -0.02 3.30 16 11 C -0.17 -3.11 6.75 -24.33 -0.16 -3.27 16 12 C 0.07 1.19 6.38 38.32 0.24 1.44 16 13 O -0.37 -6.87 9.44 -31.96 -0.30 -7.17 16 14 C 0.06 1.20 1.98 -29.64 -0.06 1.14 16 15 H 0.11 2.41 5.24 -51.93 -0.27 2.14 16 16 C 0.12 2.21 5.25 -4.04 -0.02 2.19 16 17 N -0.71 -10.70 5.41 -60.30 -0.33 -11.03 16 18 C 0.50 7.61 7.90 -10.99 -0.09 7.52 16 19 O -0.54 -10.42 16.43 5.55 0.09 -10.33 16 20 C 0.07 0.76 5.82 -5.20 -0.03 0.73 16 21 N -0.48 -5.74 2.07 -121.06 -0.25 -5.99 16 22 C 0.14 1.25 10.28 -16.84 -0.17 1.08 16 23 C -0.24 -1.80 10.01 -39.87 -0.40 -2.20 16 24 C -0.02 -0.14 10.10 -39.51 -0.40 -0.54 16 25 C -0.24 -2.83 9.99 -39.38 -0.39 -3.23 16 26 C 0.52 7.72 7.40 -15.45 -0.11 7.60 16 27 O -0.55 -10.38 16.64 4.85 0.08 -10.30 16 28 C 0.14 3.19 4.71 -4.93 -0.02 3.17 16 29 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.03 0.63 7.98 -51.93 -0.41 0.21 16 31 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.04 8.14 -51.94 -0.42 0.62 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.28 6.66 -51.93 -0.35 0.94 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.40 5.23 8.26 -40.82 -0.34 4.89 16 39 H 0.13 1.44 7.39 -51.93 -0.38 1.06 16 40 H 0.12 0.76 8.01 -51.93 -0.42 0.35 16 41 H 0.16 0.84 8.03 -52.49 -0.42 0.42 16 42 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 45 H 0.10 2.58 6.03 -51.93 -0.31 2.26 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -33.68 374.29 -8.57 -42.25 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.67 Total: 6.31 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: -1.87 Total: 12.30 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.50 Total: -54.62 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.13 Total: -27.80 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.68 -8.57 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150699724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.007 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds