Wall clock time and date at job start Tue Mar 31 2020 18:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48502 * 109.47286 * 270.00109 * 3 2 1 5 5 H 1.48499 * 109.47453 * 30.00444 * 3 2 1 6 6 H 1.48510 * 109.47110 * 150.00419 * 3 2 1 7 7 C 1.38810 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08011 * 120.00094 * 160.85723 * 7 2 1 9 9 N 1.36936 * 120.00210 * 340.85220 * 7 2 1 10 10 C 1.43417 * 120.63703 * 155.75668 * 9 7 2 11 11 C 1.55335 * 116.23912 * 269.32969 * 10 9 7 12 12 C 1.55191 * 108.87331 * 319.46585 * 11 10 9 13 13 O 1.39649 * 110.56986 * 322.14520 * 12 11 10 14 14 C 1.42377 * 108.63697 * 101.16785 * 13 12 11 15 15 H 1.08993 * 108.62097 * 28.43012 * 14 13 12 16 16 C 1.53000 * 108.61932 * 146.34234 * 14 13 12 17 17 N 1.46498 * 109.47234 * 302.05859 * 16 14 13 18 18 C 1.34773 * 120.00227 * 180.02562 * 17 16 14 19 19 O 1.21291 * 120.00040 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00430 * 179.97438 * 18 17 16 21 21 N 1.46494 * 109.47622 * 180.02562 * 20 18 17 22 22 C 1.35776 * 119.62016 * 269.72772 * 21 20 18 23 23 C 1.35352 * 120.69742 * 179.75758 * 22 21 20 24 24 C 1.40199 * 119.94710 * 0.51263 * 23 22 21 25 25 C 1.36390 * 119.26622 * 359.74161 * 24 23 22 26 26 C 1.34649 * 119.63002 * 89.99478 * 21 20 18 27 27 O 1.22070 * 119.98423 * 0.02562 * 26 21 20 28 28 C 1.46923 * 113.68405 * 267.38296 * 14 13 12 29 29 H 0.97006 * 119.99809 * 359.97438 * 1 2 3 30 30 H 1.09005 * 108.12906 * 147.57532 * 10 9 7 31 31 H 1.08992 * 108.13034 * 31.09032 * 10 9 7 32 32 H 1.08996 * 109.57109 * 199.65127 * 11 10 9 33 33 H 1.08989 * 109.56871 * 79.28019 * 11 10 9 34 34 H 1.08996 * 109.25889 * 201.86444 * 12 11 10 35 35 H 1.09002 * 109.25799 * 82.42001 * 12 11 10 36 36 H 1.08994 * 109.47313 * 182.05313 * 16 14 13 37 37 H 1.09001 * 109.47025 * 62.05765 * 16 14 13 38 38 H 0.97001 * 120.00019 * 359.97438 * 17 16 14 39 39 H 1.09001 * 109.47059 * 299.99947 * 20 18 17 40 40 H 1.09004 * 109.47027 * 59.99343 * 20 18 17 41 41 H 1.07992 * 119.64767 * 359.97438 * 22 21 20 42 42 H 1.07994 * 120.02181 * 180.23036 * 23 22 21 43 43 H 1.08002 * 120.36275 * 179.76665 * 24 23 22 44 44 H 1.08005 * 120.34660 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.98982 * 176.18929 * 28 14 13 46 46 H 1.09001 * 109.99141 * 297.56375 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0455 -1.2279 -0.3073 9 7 1.3824 -2.3554 0.3879 10 6 1.8508 -3.6319 -0.0682 11 6 1.2207 -4.1644 -1.3844 12 6 -0.2989 -3.8494 -1.3769 13 8 -0.8267 -4.0093 -0.0939 14 6 -0.9705 -2.7245 0.5024 15 1 -1.1294 -1.9902 -0.2872 16 6 -2.2040 -2.7413 1.4075 17 7 -3.3838 -3.1042 0.6185 18 6 -4.5922 -3.1820 1.2100 19 8 -4.7030 -2.9520 2.3958 20 6 -5.8060 -3.5548 0.3983 21 7 -6.9872 -3.5698 1.2647 22 6 -7.3414 -4.7182 1.8966 23 6 -8.4258 -4.7554 2.7058 24 6 -9.2019 -3.6024 2.8895 25 6 -8.8473 -2.4512 2.2499 26 6 -7.7124 -2.4462 1.4211 27 8 -7.3843 -1.4228 0.8421 28 6 0.1915 -2.3109 1.3007 29 1 -0.4850 0.8401 0.0004 30 1 1.6624 -4.3631 0.7179 31 1 2.9293 -3.5661 -0.2110 32 1 1.3698 -5.2421 -1.4507 33 1 1.6906 -3.6758 -2.2379 34 1 -0.8096 -4.5254 -2.0625 35 1 -0.4545 -2.8213 -1.7039 36 1 -2.3483 -1.7527 1.8433 37 1 -2.0605 -3.4718 2.2036 38 1 -3.2953 -3.2878 -0.3299 39 1 -5.9491 -2.8242 -0.3978 40 1 -5.6620 -4.5435 -0.0375 41 1 -6.7497 -5.6104 1.7547 42 1 -8.6954 -5.6738 3.2060 43 1 -10.0706 -3.6256 3.5308 44 1 -9.4325 -1.5526 2.3793 45 1 0.0466 -1.2963 1.6718 46 1 0.3336 -2.9975 2.1353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150699724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:28 Heat of formation + Delta-G solvation = -62.631097 kcal Electronic energy + Delta-G solvation = -29561.124366 eV Core-core repulsion = 25451.954743 eV Total energy + Delta-G solvation = -4109.169622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.47466 -40.97240 -40.09448 -37.96042 -36.81940 -36.07034 -35.46762 -33.88629 -33.03045 -30.92268 -30.55281 -29.43631 -27.07227 -26.90760 -24.87513 -24.37588 -23.63167 -22.44341 -21.62521 -21.29555 -19.09497 -18.72376 -18.48755 -18.30266 -17.71410 -17.35748 -16.86989 -16.62499 -16.51383 -16.29726 -16.05411 -15.63243 -15.55166 -15.22722 -15.03491 -14.86094 -14.52128 -14.28368 -14.07126 -13.60941 -13.42052 -13.30679 -13.18829 -12.99953 -12.93716 -12.71367 -12.63046 -12.52637 -12.33512 -11.94395 -11.79635 -11.56926 -11.39168 -11.20316 -11.08818 -10.83765 -10.57662 -10.28713 -10.17062 -8.96529 -8.73581 -7.92280 -5.32421 -0.07304 0.95222 1.44280 1.44410 1.48474 1.49483 1.56259 2.17851 2.49982 2.76053 3.08584 3.25845 3.48370 3.60478 3.71330 3.79729 4.04342 4.13514 4.16133 4.24282 4.26695 4.36817 4.38048 4.39991 4.53866 4.55794 4.70570 4.75770 4.80162 4.92981 5.04658 5.06904 5.18641 5.19392 5.19765 5.32949 5.35559 5.40284 5.40628 5.48862 5.65945 5.67302 6.07186 6.33500 6.43004 6.49931 6.97077 7.08064 7.10362 7.81682 8.33952 9.13286 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.002785 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.696191 B =10052.177006 C =11109.817532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.038 4.038 3 Si 0.957 3.043 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.602 5.602 10 C 0.153 3.847 11 C -0.165 4.165 12 C 0.067 3.933 13 O -0.362 6.362 14 C 0.082 3.918 15 H 0.083 0.917 16 C 0.136 3.864 17 N -0.699 5.699 18 C 0.496 3.504 19 O -0.582 6.582 20 C 0.074 3.926 21 N -0.481 5.481 22 C 0.133 3.867 23 C -0.230 4.230 24 C 0.009 3.991 25 C -0.286 4.286 26 C 0.495 3.505 27 O -0.615 6.615 28 C 0.144 3.856 29 H 0.249 0.751 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.414 0.586 39 H 0.125 0.875 40 H 0.179 0.821 41 H 0.201 0.799 42 H 0.186 0.814 43 H 0.170 0.830 44 H 0.143 0.857 45 H 0.074 0.926 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.846 -16.462 0.434 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.234 4.234 3 Si 0.787 3.213 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.323 5.323 10 C 0.025 3.975 11 C -0.206 4.206 12 C -0.010 4.010 13 O -0.281 6.281 14 C 0.023 3.977 15 H 0.100 0.900 16 C 0.010 3.990 17 N -0.351 5.351 18 C 0.281 3.719 19 O -0.462 6.462 20 C -0.051 4.051 21 N -0.190 5.190 22 C 0.008 3.992 23 C -0.252 4.252 24 C -0.013 4.013 25 C -0.308 4.308 26 C 0.300 3.700 27 O -0.503 6.503 28 C 0.019 3.981 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.251 0.749 39 H 0.143 0.857 40 H 0.197 0.803 41 H 0.218 0.782 42 H 0.203 0.797 43 H 0.187 0.813 44 H 0.161 0.839 45 H 0.092 0.908 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.778 -15.701 0.995 22.281 hybrid contribution 0.907 1.833 -0.529 2.112 sum -14.871 -13.868 0.467 20.339 Atomic orbital electron populations 1.69988 1.05900 1.25596 1.54915 1.25473 0.96000 1.00566 1.01366 0.85441 0.78121 0.80452 0.77334 1.21378 1.22293 1.20235 1.19389 0.93628 0.86273 1.39770 0.91790 1.44217 1.34321 1.01988 1.51797 1.20506 0.96019 0.86653 0.94323 1.23495 0.96698 1.00735 0.99662 1.22420 0.93815 1.00169 0.84646 1.87497 1.83144 1.27845 1.29598 1.21707 0.93300 0.84915 0.97804 0.89976 1.21346 0.83916 0.99471 0.94232 1.45684 1.06428 1.69185 1.13777 1.21304 0.85383 0.76962 0.88201 1.90715 1.86218 1.51422 1.17816 1.21983 0.81125 1.09117 0.92828 1.45105 1.23243 1.10998 1.39622 1.22777 0.96387 0.89364 0.90716 1.21210 0.97718 1.01614 1.04692 1.21896 0.97217 0.90633 0.91533 1.22098 1.00095 1.02501 1.06075 1.17714 0.85688 0.82474 0.84109 1.90925 1.73803 1.32415 1.53144 1.20658 0.86327 0.99970 0.91155 0.94172 0.94528 0.95167 0.90069 0.92897 0.89010 0.94796 0.93009 0.91773 0.74909 0.85733 0.80337 0.78231 0.79708 0.81252 0.83947 0.90768 0.95541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.68 9.57 21.65 0.21 -49.48 16 2 C -0.04 -2.00 4.93 84.86 0.42 -1.58 16 3 Si 0.96 43.93 29.59 68.60 2.03 45.96 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.26 -13.68 9.62 84.03 0.81 -12.87 16 8 H 0.06 3.35 7.88 -2.90 -0.02 3.33 16 9 N -0.60 -28.70 2.61 -706.01 -1.84 -30.54 16 10 C 0.15 6.16 5.32 87.75 0.47 6.63 16 11 C -0.17 -5.58 6.75 32.15 0.22 -5.36 16 12 C 0.07 2.25 6.38 72.73 0.46 2.71 16 13 O -0.36 -12.79 9.44 -137.28 -1.30 -14.08 16 14 C 0.08 3.26 1.98 28.71 0.06 3.32 16 15 H 0.08 3.78 5.24 -2.39 -0.01 3.77 16 16 C 0.14 4.99 5.25 86.38 0.45 5.45 16 17 N -0.70 -20.86 5.41 -463.06 -2.51 -23.37 16 18 C 0.50 14.93 7.90 87.66 0.69 15.62 16 19 O -0.58 -22.90 16.43 -3.06 -0.05 -22.95 16 20 C 0.07 1.52 5.82 85.63 0.50 2.01 16 21 N -0.48 -10.94 2.07 -655.07 -1.36 -12.30 16 22 C 0.13 1.83 10.28 83.42 0.86 2.69 16 23 C -0.23 -2.52 10.01 22.08 0.22 -2.30 16 24 C 0.01 0.13 10.10 22.31 0.23 0.35 16 25 C -0.29 -6.78 9.99 22.40 0.22 -6.55 16 26 C 0.49 15.25 7.40 84.82 0.63 15.88 16 27 O -0.61 -25.08 16.64 -5.54 -0.09 -25.17 16 28 C 0.14 6.56 4.71 83.79 0.39 6.95 16 29 H 0.25 13.49 8.31 -92.70 -0.77 12.72 16 30 H 0.04 1.42 7.98 -2.38 -0.02 1.40 16 31 H 0.03 1.21 7.96 -2.39 -0.02 1.19 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.03 1.36 6.66 -2.39 -0.02 1.34 16 36 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.41 10.25 8.26 -92.71 -0.77 9.48 16 39 H 0.12 2.75 7.39 -2.39 -0.02 2.73 16 40 H 0.18 1.47 8.01 -2.39 -0.02 1.45 16 41 H 0.20 1.01 8.03 -2.91 -0.02 0.99 16 42 H 0.19 0.55 8.06 -2.91 -0.02 0.53 16 43 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 44 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 45 H 0.07 3.84 6.03 -2.39 -0.01 3.83 16 46 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -79.05 374.29 1.95 -77.11 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.23 Total: 21.87 kcal Atomic # 6 Polarization: 26.32 SS G_CDS: 6.62 Total: 32.95 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.50 Total: -115.69 kcal Atomic # 8 Polarization: -60.77 SS G_CDS: -1.44 Total: -62.20 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -79.05 1.95 -77.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150699724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.474 kcal (2) G-P(sol) polarization free energy of solvation -79.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds