Wall clock time and date at job start Tue Mar 31 2020 18:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48504 * 109.46983 * 270.00346 * 3 2 1 5 5 H 1.48495 * 109.46907 * 29.99958 * 3 2 1 6 6 H 1.48498 * 109.47244 * 150.00302 * 3 2 1 7 7 C 1.37883 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99430 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00081 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47310 * 59.99613 * 9 7 2 11 11 N 1.46906 * 109.47027 * 299.99559 * 9 7 2 12 12 C 1.50702 * 109.47070 * 179.97438 * 9 7 2 13 13 O 1.21281 * 119.99885 * 98.09481 * 12 9 7 14 14 N 1.34774 * 119.99837 * 278.09235 * 12 9 7 15 15 C 1.47443 * 125.67976 * 318.16918 * 14 12 9 16 16 H 1.09006 * 109.85280 * 60.01463 * 15 14 12 17 17 C 1.52998 * 110.06840 * 298.74622 * 15 14 12 18 18 F 1.39902 * 109.46811 * 307.92190 * 17 15 14 19 19 F 1.39899 * 109.47307 * 67.92275 * 17 15 14 20 20 F 1.39897 * 109.47258 * 187.92740 * 17 15 14 21 21 C 1.54362 * 107.10369 * 179.31711 * 15 14 12 22 22 C 1.55241 * 103.14897 * 338.06154 * 21 15 14 23 23 C 1.46893 * 125.71336 * 138.38214 * 14 12 9 24 24 C 1.52550 * 110.53138 * 322.21646 * 23 14 12 25 25 C 1.53137 * 109.35803 * 66.43398 * 24 23 14 26 26 N 1.46856 * 109.45852 * 58.25322 * 25 24 23 27 27 C 1.46857 * 111.27171 * 297.79496 * 26 25 24 28 28 C 1.52546 * 110.51566 * 84.83904 * 23 14 12 29 29 H 0.97008 * 119.99628 * 0.02562 * 1 2 3 30 30 H 1.00906 * 110.99955 * 176.04130 * 11 9 7 31 31 H 1.00896 * 111.00636 * 300.00410 * 11 9 7 32 32 H 1.09001 * 110.71198 * 219.59782 * 21 15 14 33 33 H 1.08997 * 110.70978 * 96.52332 * 21 15 14 34 34 H 1.08994 * 111.01929 * 152.98983 * 22 21 15 35 35 H 1.08998 * 111.01547 * 276.82431 * 22 21 15 36 36 H 1.09002 * 109.48676 * 186.40072 * 24 23 14 37 37 H 1.09006 * 109.48870 * 306.46957 * 24 23 14 38 38 H 1.08997 * 109.46932 * 298.26110 * 25 24 23 39 39 H 1.08999 * 109.47301 * 178.25523 * 25 24 23 40 40 H 1.00903 * 110.99481 * 61.94230 * 26 25 24 41 41 H 1.08996 * 109.47418 * 302.21815 * 27 26 25 42 42 H 1.09002 * 109.47244 * 182.20811 * 27 26 25 43 43 H 1.09003 * 109.49188 * 53.53654 * 28 23 14 44 44 H 1.09008 * 109.48925 * 173.57676 * 28 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 1 3.8751 -0.6805 0.8887 11 7 4.0007 -0.5015 -1.2007 12 6 4.0137 -2.6150 -0.0010 13 8 4.3549 -3.1377 -1.0409 14 7 4.0839 -3.3048 1.1547 15 6 4.5576 -2.7736 2.4459 16 1 3.9341 -1.9333 2.7517 17 6 6.0160 -2.3268 2.3265 18 9 6.7799 -3.3676 1.7877 19 9 6.0942 -1.2090 1.4889 20 9 6.5075 -1.9953 3.5937 21 6 4.4412 -3.9162 3.4772 22 6 3.3853 -4.8599 2.8410 23 6 3.7054 -4.7123 1.3375 24 6 2.4690 -5.0459 0.5086 25 6 2.8159 -4.9538 -0.9801 26 7 3.9167 -5.8771 -1.2840 27 6 5.1325 -5.5191 -0.5421 28 6 4.8639 -5.6307 0.9613 29 1 -0.4850 0.8401 -0.0004 30 1 5.0072 -0.4313 -1.1925 31 1 3.6768 -0.9587 -2.0397 32 1 4.0900 -3.5356 4.4363 33 1 5.3960 -4.4290 3.5937 34 1 3.5299 -5.8881 3.1723 35 1 2.3736 -4.5192 3.0612 36 1 2.1362 -6.0572 0.7426 37 1 1.6734 -4.3379 0.7411 38 1 3.1196 -3.9348 -1.2200 39 1 1.9422 -5.2219 -1.5741 40 1 3.6487 -6.8323 -1.0997 41 1 5.4185 -4.4958 -0.7852 42 1 5.9397 -6.1975 -0.8184 43 1 5.7563 -5.3351 1.5131 44 1 4.6072 -6.6605 1.2099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158240825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:08 Heat of formation + Delta-G solvation = -134.119724 kcal Electronic energy + Delta-G solvation = -33743.824005 eV Core-core repulsion = 29089.697663 eV Total energy + Delta-G solvation = -4654.126342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.04193 -47.55741 -47.49949 -41.19340 -38.02468 -36.59153 -34.12937 -31.89281 -31.66876 -31.39958 -30.51038 -27.48693 -26.70459 -24.26871 -23.77390 -22.72318 -22.23055 -21.24164 -20.24349 -18.77463 -18.38603 -18.07742 -17.50737 -17.04315 -16.79637 -15.81372 -15.40954 -15.03414 -14.72984 -14.55289 -14.45708 -14.36579 -14.05801 -13.96291 -13.92242 -13.66857 -13.64167 -13.40429 -13.13800 -13.11663 -12.79337 -12.64911 -12.40903 -12.30736 -11.97730 -11.83029 -11.47227 -11.42481 -11.17102 -10.85326 -10.77240 -10.56226 -10.25446 -10.22881 -9.69161 -9.34647 -9.06766 -8.68011 -8.29651 -7.88200 -7.59154 -6.17207 -4.31568 2.50642 2.84772 3.06781 3.48201 3.53799 3.66107 3.78272 3.91182 4.29083 4.48322 4.51858 4.52697 4.75678 4.80300 5.02403 5.04890 5.10433 5.26761 5.38371 5.40944 5.51455 5.55904 5.64974 5.69193 5.75333 5.80034 5.89255 5.93604 6.08454 6.19313 6.29245 6.35084 6.49626 6.65389 6.72302 7.09064 7.25890 7.52104 7.68178 7.87891 7.98287 8.10487 8.48426 8.53930 8.77330 9.42741 10.90650 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.007089 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.158741 B = 3948.922115 C = 4977.723406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.091 3.909 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.316 1.316 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.076 0.924 9 C 0.175 3.825 10 H 0.060 0.940 11 N -0.825 5.825 12 C 0.523 3.477 13 O -0.481 6.481 14 N -0.625 5.625 15 C 0.103 3.897 16 H 0.126 0.874 17 C 0.433 3.567 18 F -0.178 7.178 19 F -0.177 7.177 20 F -0.182 7.182 21 C -0.123 4.123 22 C -0.120 4.120 23 C 0.174 3.826 24 C -0.154 4.154 25 C -0.005 4.005 26 N -0.670 5.670 27 C 0.039 3.961 28 C -0.161 4.161 29 H 0.267 0.733 30 H 0.315 0.685 31 H 0.346 0.654 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.154 0.846 39 H 0.057 0.943 40 H 0.317 0.683 41 H 0.117 0.883 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.583 -9.510 8.208 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.115 4.115 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.246 1.246 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.094 0.906 9 C 0.061 3.939 10 H 0.077 0.923 11 N -0.355 5.355 12 C 0.318 3.682 13 O -0.358 6.358 14 N -0.362 5.362 15 C -0.004 4.004 16 H 0.143 0.857 17 C 0.377 3.623 18 F -0.159 7.159 19 F -0.159 7.159 20 F -0.164 7.164 21 C -0.161 4.161 22 C -0.158 4.158 23 C 0.090 3.910 24 C -0.194 4.194 25 C -0.133 4.133 26 N -0.297 5.297 27 C -0.090 4.090 28 C -0.202 4.202 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.160 0.840 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.169 0.831 39 H 0.075 0.925 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.387 -8.639 7.164 14.631 hybrid contribution 0.779 -0.478 0.868 1.260 sum 10.166 -9.117 8.031 15.842 Atomic orbital electron populations 1.69920 1.06694 1.27716 1.48130 1.24910 0.94600 0.99931 0.92074 0.85918 0.78415 0.80733 0.78521 1.20266 1.24585 1.19826 1.20341 0.85624 0.95062 1.54810 0.90638 1.19878 0.97802 0.83951 0.92239 0.92257 1.59368 1.13489 1.56569 1.06049 1.22729 0.73450 0.91016 0.80997 1.90134 1.42233 1.70117 1.33348 1.48120 1.69660 1.10991 1.07451 1.22734 0.88255 1.01623 0.87824 0.85679 1.21380 0.91768 0.75445 0.73665 1.93153 1.78529 1.57989 1.86272 1.93225 1.96925 1.53673 1.72038 1.93163 1.89728 1.92781 1.40711 1.22666 1.01178 0.94725 0.97480 1.22820 0.99592 0.99828 0.93545 1.20773 0.94350 0.81340 0.94553 1.22445 0.96981 1.01591 0.98349 1.23724 0.93115 1.04480 0.91972 1.60454 1.05109 1.04876 1.59228 1.22564 0.92260 1.05253 0.88960 1.22581 0.98733 0.98380 1.00472 0.92358 0.87397 0.83965 0.88482 0.89954 0.89723 0.89488 0.92083 0.90044 0.83109 0.92494 0.86702 0.86553 0.92833 0.91173 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.96 55.43 0.77 -24.83 16 2 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 3 Si 0.93 22.64 26.03 -169.99 -4.42 18.22 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.32 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -13.31 9.29 -34.44 -0.32 -13.63 16 8 H 0.08 2.10 7.75 -52.49 -0.41 1.70 16 9 C 0.17 3.77 2.05 -70.01 -0.14 3.63 16 10 H 0.06 1.30 5.23 -51.93 -0.27 1.03 16 11 N -0.83 -17.33 6.54 -6.65 -0.04 -17.38 16 12 C 0.52 10.06 4.09 -10.99 -0.04 10.01 16 13 O -0.48 -9.71 9.23 5.56 0.05 -9.66 16 14 N -0.63 -10.06 2.34 -149.29 -0.35 -10.41 16 15 C 0.10 1.43 2.59 -66.70 -0.17 1.26 16 16 H 0.13 1.76 7.74 -51.93 -0.40 1.36 16 17 C 0.43 6.21 2.66 37.16 0.10 6.31 16 18 F -0.18 -2.61 14.94 2.25 0.03 -2.57 16 19 F -0.18 -2.94 15.01 2.25 0.03 -2.91 16 20 F -0.18 -2.38 16.91 2.25 0.04 -2.34 16 21 C -0.12 -1.26 5.68 -24.83 -0.14 -1.41 16 22 C -0.12 -1.31 5.95 -24.79 -0.15 -1.46 16 23 C 0.17 2.45 0.65 -131.32 -0.09 2.36 16 24 C -0.15 -2.39 4.81 -26.89 -0.13 -2.52 16 25 C -0.01 -0.09 6.14 -3.78 -0.02 -0.12 16 26 N -0.67 -10.79 6.83 -113.69 -0.78 -11.56 16 27 C 0.04 0.60 6.21 -3.78 -0.02 0.58 16 28 C -0.16 -2.14 4.93 -26.90 -0.13 -2.28 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.31 5.97 9.06 -39.29 -0.36 5.61 16 31 H 0.35 7.32 8.56 -39.29 -0.34 6.98 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.79 7.27 -51.93 -0.38 0.41 16 34 H 0.08 0.75 8.00 -51.93 -0.42 0.34 16 35 H 0.09 0.98 8.04 -51.93 -0.42 0.57 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.45 7.91 -51.93 -0.41 1.04 16 38 H 0.15 3.17 3.00 -50.23 -0.15 3.02 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.32 4.45 8.85 -39.29 -0.35 4.10 16 41 H 0.12 2.17 4.59 -44.32 -0.20 1.97 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.93 5.74 -51.93 -0.30 0.63 16 44 H 0.06 0.71 8.13 -51.92 -0.42 0.29 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -28.74 333.82 -6.67 -35.41 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -5.67 Total: 17.89 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.36 Total: 5.11 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.40 Total: -64.18 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.05 Total: -9.66 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 0.11 Total: -7.82 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.42 Total: 18.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.74 -6.67 -35.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158240825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.709 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds