Wall clock time and date at job start Tue Mar 31 2020 18:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48504 * 109.46983 * 270.00346 * 3 2 1 5 5 H 1.48495 * 109.46907 * 29.99958 * 3 2 1 6 6 H 1.48498 * 109.47244 * 150.00302 * 3 2 1 7 7 C 1.37883 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99430 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00081 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47310 * 59.99613 * 9 7 2 11 11 N 1.46906 * 109.47027 * 299.99559 * 9 7 2 12 12 C 1.50702 * 109.47070 * 179.97438 * 9 7 2 13 13 O 1.21281 * 119.99885 * 98.09481 * 12 9 7 14 14 N 1.34774 * 119.99837 * 278.09235 * 12 9 7 15 15 C 1.47443 * 125.67976 * 318.16918 * 14 12 9 16 16 H 1.09006 * 109.85280 * 60.01463 * 15 14 12 17 17 C 1.52998 * 110.06840 * 298.74622 * 15 14 12 18 18 F 1.39902 * 109.46811 * 307.92190 * 17 15 14 19 19 F 1.39899 * 109.47307 * 67.92275 * 17 15 14 20 20 F 1.39897 * 109.47258 * 187.92740 * 17 15 14 21 21 C 1.54362 * 107.10369 * 179.31711 * 15 14 12 22 22 C 1.55241 * 103.14897 * 338.06154 * 21 15 14 23 23 C 1.46893 * 125.71336 * 138.38214 * 14 12 9 24 24 C 1.52550 * 110.53138 * 322.21646 * 23 14 12 25 25 C 1.53137 * 109.35803 * 66.43398 * 24 23 14 26 26 N 1.46856 * 109.45852 * 58.25322 * 25 24 23 27 27 C 1.46857 * 111.27171 * 297.79496 * 26 25 24 28 28 C 1.52546 * 110.51566 * 84.83904 * 23 14 12 29 29 H 0.97008 * 119.99628 * 0.02562 * 1 2 3 30 30 H 1.00906 * 110.99955 * 176.04130 * 11 9 7 31 31 H 1.00896 * 111.00636 * 300.00410 * 11 9 7 32 32 H 1.09001 * 110.71198 * 219.59782 * 21 15 14 33 33 H 1.08997 * 110.70978 * 96.52332 * 21 15 14 34 34 H 1.08994 * 111.01929 * 152.98983 * 22 21 15 35 35 H 1.08998 * 111.01547 * 276.82431 * 22 21 15 36 36 H 1.09002 * 109.48676 * 186.40072 * 24 23 14 37 37 H 1.09006 * 109.48870 * 306.46957 * 24 23 14 38 38 H 1.08997 * 109.46932 * 298.26110 * 25 24 23 39 39 H 1.08999 * 109.47301 * 178.25523 * 25 24 23 40 40 H 1.00903 * 110.99481 * 61.94230 * 26 25 24 41 41 H 1.08996 * 109.47418 * 302.21815 * 27 26 25 42 42 H 1.09002 * 109.47244 * 182.20811 * 27 26 25 43 43 H 1.09003 * 109.49188 * 53.53654 * 28 23 14 44 44 H 1.09008 * 109.48925 * 173.57676 * 28 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 1 3.8751 -0.6805 0.8887 11 7 4.0007 -0.5015 -1.2007 12 6 4.0137 -2.6150 -0.0010 13 8 4.3549 -3.1377 -1.0409 14 7 4.0839 -3.3048 1.1547 15 6 4.5576 -2.7736 2.4459 16 1 3.9341 -1.9333 2.7517 17 6 6.0160 -2.3268 2.3265 18 9 6.7799 -3.3676 1.7877 19 9 6.0942 -1.2090 1.4889 20 9 6.5075 -1.9953 3.5937 21 6 4.4412 -3.9162 3.4772 22 6 3.3853 -4.8599 2.8410 23 6 3.7054 -4.7123 1.3375 24 6 2.4690 -5.0459 0.5086 25 6 2.8159 -4.9538 -0.9801 26 7 3.9167 -5.8771 -1.2840 27 6 5.1325 -5.5191 -0.5421 28 6 4.8639 -5.6307 0.9613 29 1 -0.4850 0.8401 -0.0004 30 1 5.0072 -0.4313 -1.1925 31 1 3.6768 -0.9587 -2.0397 32 1 4.0900 -3.5356 4.4363 33 1 5.3960 -4.4290 3.5937 34 1 3.5299 -5.8881 3.1723 35 1 2.3736 -4.5192 3.0612 36 1 2.1362 -6.0572 0.7426 37 1 1.6734 -4.3379 0.7411 38 1 3.1196 -3.9348 -1.2200 39 1 1.9422 -5.2219 -1.5741 40 1 3.6487 -6.8323 -1.0997 41 1 5.4185 -4.4958 -0.7852 42 1 5.9397 -6.1975 -0.8184 43 1 5.7563 -5.3351 1.5131 44 1 4.6072 -6.6605 1.2099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158240825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:07 Heat of formation + Delta-G solvation = -156.425945 kcal Electronic energy + Delta-G solvation = -33744.791276 eV Core-core repulsion = 29089.697663 eV Total energy + Delta-G solvation = -4655.093612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.17868 -48.70215 -48.64079 -42.47168 -39.38277 -37.82416 -35.93103 -33.78109 -32.94978 -32.54467 -31.72302 -28.78294 -28.40365 -25.43575 -25.34190 -23.94999 -23.50754 -22.34440 -21.67645 -19.95846 -19.54778 -19.23413 -19.20927 -18.68434 -18.01004 -17.18600 -16.90730 -16.69151 -16.02718 -15.96594 -15.75184 -15.60804 -15.51608 -15.23845 -15.07991 -14.83773 -14.79118 -14.63267 -14.43038 -14.33567 -14.14373 -13.92359 -13.81516 -13.62461 -13.49964 -13.03535 -12.99005 -12.74230 -12.47895 -12.35993 -12.00277 -11.97219 -11.81779 -11.57967 -11.35567 -11.06600 -10.78285 -10.50461 -9.73626 -9.27452 -8.99624 -8.28553 -6.43892 1.12988 1.50141 1.56790 1.61936 1.69779 1.86988 2.48951 2.68341 2.85937 3.05454 3.15787 3.43450 3.46808 3.55962 3.80430 3.91205 3.94224 3.99908 4.11101 4.22618 4.31068 4.38780 4.49831 4.55022 4.68946 4.74696 4.82218 4.91449 4.95467 4.97010 4.99412 5.04774 5.25137 5.27878 5.42640 5.50984 5.67312 6.01982 6.21981 6.23382 6.35780 6.66287 6.71467 6.77193 7.06371 7.32579 8.82685 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.007089 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.158741 B = 3948.922115 C = 4977.723406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.044 3.956 3 Si 0.986 3.014 4 H -0.282 1.282 5 H -0.319 1.319 6 H -0.259 1.259 7 C -0.508 4.508 8 H 0.042 0.958 9 C 0.177 3.823 10 H 0.061 0.939 11 N -0.829 5.829 12 C 0.524 3.476 13 O -0.492 6.492 14 N -0.627 5.627 15 C 0.093 3.907 16 H 0.119 0.881 17 C 0.435 3.565 18 F -0.179 7.179 19 F -0.194 7.194 20 F -0.172 7.172 21 C -0.113 4.113 22 C -0.112 4.112 23 C 0.166 3.834 24 C -0.146 4.146 25 C -0.005 4.005 26 N -0.676 5.676 27 C 0.038 3.962 28 C -0.150 4.150 29 H 0.267 0.733 30 H 0.329 0.671 31 H 0.343 0.657 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.123 0.877 39 H 0.043 0.957 40 H 0.332 0.668 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.370 -11.026 10.220 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.157 4.157 3 Si 0.816 3.184 4 H -0.208 1.208 5 H -0.249 1.249 6 H -0.184 1.184 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.063 3.937 10 H 0.078 0.922 11 N -0.360 5.360 12 C 0.317 3.683 13 O -0.370 6.370 14 N -0.364 5.364 15 C -0.014 4.014 16 H 0.137 0.863 17 C 0.380 3.620 18 F -0.160 7.160 19 F -0.176 7.176 20 F -0.153 7.153 21 C -0.150 4.150 22 C -0.149 4.149 23 C 0.082 3.918 24 C -0.186 4.186 25 C -0.133 4.133 26 N -0.304 5.304 27 C -0.091 4.091 28 C -0.190 4.190 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.139 0.861 39 H 0.062 0.938 40 H 0.150 0.850 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.202 -10.181 9.209 17.719 hybrid contribution 0.232 -0.087 0.192 0.314 sum 11.435 -10.268 9.401 18.016 Atomic orbital electron populations 1.70027 1.08153 1.28315 1.50616 1.25593 0.95047 1.02799 0.92262 0.85060 0.77761 0.77425 0.78112 1.20830 1.24878 1.18403 1.20432 0.87873 0.93386 1.52909 0.93993 1.19622 0.95343 0.86309 0.92385 0.92153 1.59185 1.14599 1.56543 1.05623 1.21989 0.74080 0.90211 0.81991 1.90182 1.42669 1.70033 1.34144 1.48024 1.68946 1.12040 1.07349 1.23024 0.87649 1.03085 0.87655 0.86308 1.21404 0.92012 0.74920 0.73693 1.93149 1.78586 1.57911 1.86375 1.93190 1.97010 1.54649 1.72717 1.93183 1.89621 1.92686 1.39849 1.22770 1.01869 0.93121 0.97243 1.22831 0.99506 1.01916 0.90685 1.21040 0.93882 0.80199 0.96632 1.22344 0.96990 1.02158 0.97105 1.23479 0.93129 1.03204 0.93487 1.60360 1.04738 1.05358 1.59912 1.22464 0.92166 1.03693 0.90776 1.22484 0.98446 0.99583 0.98505 0.92393 0.85817 0.84254 0.85780 0.88378 0.86418 0.90067 0.89518 0.93217 0.86098 0.93817 0.85049 0.89621 0.91617 0.90488 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 13.96 21.45 0.30 -55.07 16 2 C 0.04 2.44 5.47 84.66 0.46 2.91 16 3 Si 0.99 47.05 26.03 68.60 1.79 48.84 16 4 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.32 -15.25 7.11 99.48 0.71 -14.55 16 6 H -0.26 -11.67 6.54 99.48 0.65 -11.02 16 7 C -0.51 -26.73 9.29 25.60 0.24 -26.49 16 8 H 0.04 2.46 7.75 -2.91 -0.02 2.43 16 9 C 0.18 7.71 2.05 43.42 0.09 7.80 16 10 H 0.06 2.63 5.23 -2.39 -0.01 2.62 16 11 N -0.83 -34.87 6.54 -174.95 -1.14 -36.01 16 12 C 0.52 20.27 4.09 87.66 0.36 20.63 16 13 O -0.49 -20.21 9.23 -3.03 -0.03 -20.24 16 14 N -0.63 -19.57 2.34 -744.63 -1.75 -21.32 16 15 C 0.09 2.38 2.59 45.27 0.12 2.50 16 16 H 0.12 3.19 7.74 -2.38 -0.02 3.18 16 17 C 0.44 11.59 2.66 71.98 0.19 11.78 16 18 F -0.18 -4.82 14.94 44.97 0.67 -4.14 16 19 F -0.19 -6.22 15.01 44.97 0.68 -5.55 16 20 F -0.17 -4.02 16.91 44.97 0.76 -3.26 16 21 C -0.11 -1.87 5.68 31.83 0.18 -1.69 16 22 C -0.11 -2.02 5.95 31.85 0.19 -1.83 16 23 C 0.17 4.30 0.65 3.71 0.00 4.30 16 24 C -0.15 -4.43 4.81 30.49 0.15 -4.29 16 25 C 0.00 -0.17 6.14 86.36 0.53 0.36 16 26 N -0.68 -21.03 6.83 -513.62 -3.51 -24.54 16 27 C 0.04 1.12 6.21 86.35 0.54 1.66 16 28 C -0.15 -3.49 4.93 30.49 0.15 -3.34 16 29 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 30 H 0.33 12.34 9.06 -89.69 -0.81 11.52 16 31 H 0.34 14.80 8.56 -89.70 -0.77 14.04 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.39 7.27 -2.39 -0.02 1.37 16 34 H 0.12 1.43 8.00 -2.39 -0.02 1.41 16 35 H 0.08 1.61 8.04 -2.39 -0.02 1.59 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.82 7.91 -2.38 -0.02 1.80 16 38 H 0.12 5.27 3.00 -96.48 -0.29 4.98 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.33 8.63 8.85 -89.69 -0.79 7.84 16 41 H 0.09 3.15 4.59 -2.78 -0.01 3.14 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.73 5.74 -2.39 -0.01 1.72 16 44 H 0.09 1.61 8.13 -2.38 -0.02 1.59 16 Total: -1.00 -64.42 333.82 -0.66 -65.08 By element: Atomic # 1 Polarization: 43.54 SS G_CDS: -1.62 Total: 41.92 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 3.19 Total: 14.31 kcal Atomic # 7 Polarization: -130.85 SS G_CDS: -6.10 Total: -136.95 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.03 Total: -20.24 kcal Atomic # 9 Polarization: -15.06 SS G_CDS: 2.11 Total: -12.95 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.79 Total: 48.84 kcal Total: -64.42 -0.66 -65.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158240825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.346 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds