Wall clock time and date at job start Tue Mar 31 2020 18:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86796 * 119.99707 * 2 1 4 4 H 1.48505 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47283 * 299.99929 * 3 2 1 6 6 H 1.48500 * 109.47155 * 60.00741 * 3 2 1 7 7 C 1.38948 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00129 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00203 * 359.97438 * 10 9 7 12 12 C 1.50711 * 119.99818 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.46854 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00013 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47143 * 185.44811 * 14 13 12 16 16 C 1.53002 * 115.54897 * 295.10744 * 15 14 13 17 17 C 1.53001 * 109.47284 * 279.63554 * 16 15 14 18 18 N 1.46500 * 109.46804 * 175.50348 * 17 16 15 19 19 C 1.34783 * 119.99531 * 180.02562 * 18 17 16 20 20 O 1.21694 * 119.99760 * 359.97438 * 19 18 17 21 21 C 1.46651 * 119.99778 * 180.02562 * 19 18 17 22 22 C 1.36547 * 125.98683 * 179.71776 * 21 19 18 23 23 C 1.40371 * 106.70657 * 179.84853 * 22 21 19 24 24 C 1.35126 * 107.11280 * 0.40916 * 23 22 21 25 25 O 1.33926 * 108.77022 * 359.74351 * 24 23 22 26 26 C 1.52998 * 117.51730 * 80.80925 * 15 14 13 27 27 C 1.53001 * 117.49660 * 149.43928 * 15 14 13 28 28 H 0.96991 * 119.99651 * 359.97438 * 1 2 3 29 29 H 0.97010 * 119.99870 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46616 * 60.00307 * 12 10 9 31 31 H 1.08993 * 109.46997 * 300.00011 * 12 10 9 32 32 H 1.00909 * 111.00048 * 303.95448 * 13 12 10 33 33 H 1.09004 * 109.46817 * 65.44959 * 14 13 12 34 34 H 1.08996 * 109.47064 * 305.44921 * 14 13 12 35 35 H 1.09004 * 109.46475 * 159.64080 * 16 15 14 36 36 H 1.08994 * 109.47382 * 39.64188 * 16 15 14 37 37 H 1.09004 * 109.46837 * 55.50679 * 17 16 15 38 38 H 1.09000 * 109.47130 * 295.50863 * 17 16 15 39 39 H 0.96992 * 120.00278 * 0.02562 * 18 17 16 40 40 H 1.07998 * 126.64383 * 359.95388 * 22 21 19 41 41 H 1.08004 * 126.44139 * 180.15601 * 23 22 21 42 42 H 1.08007 * 125.61197 * 179.78466 * 24 23 22 43 43 H 1.09005 * 117.49974 * 214.96581 * 26 15 14 44 44 H 1.09001 * 117.50124 * 359.97438 * 26 15 14 45 45 H 1.08994 * 117.50151 * 359.97438 * 27 15 14 46 46 H 1.09001 * 117.49888 * 144.99469 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0030 12 6 1.2438 -4.8630 -0.0022 13 7 2.1984 -5.9795 -0.0027 14 6 1.4982 -7.2708 -0.0039 15 6 2.5173 -8.4038 0.1326 16 6 3.4957 -8.5553 -1.0339 17 6 2.8136 -9.3095 -2.1771 18 7 3.7123 -9.3609 -3.3329 19 6 3.3204 -9.9799 -4.4642 20 8 2.2202 -10.4964 -4.5252 21 6 4.2201 -10.0318 -5.6211 22 6 3.9522 -10.6282 -6.8198 23 6 5.0827 -10.4338 -7.6289 24 6 5.9832 -9.7441 -6.8946 25 8 5.4599 -9.5037 -5.6855 26 6 3.0366 -8.7222 1.5361 27 6 2.0640 -9.6798 0.8447 28 1 -0.4849 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6169 -4.9201 -0.8920 31 1 0.6176 -4.9213 0.8880 32 1 2.8334 -5.9121 -0.7841 33 1 0.9500 -7.3860 -0.9389 34 1 0.8008 -7.3067 0.8330 35 1 4.3721 -9.1126 -0.7029 36 1 3.8024 -7.5688 -1.3814 37 1 1.8940 -8.7942 -2.4545 38 1 2.5786 -10.3237 -1.8540 39 1 4.5893 -8.9494 -3.2840 40 1 3.0454 -11.1473 -7.0931 41 1 5.2104 -10.7753 -8.6455 42 1 6.9634 -9.4367 -7.2283 43 1 4.0753 -9.0398 1.6285 44 1 2.6525 -8.1243 2.3626 45 1 1.0398 -9.7121 1.2163 46 1 2.4627 -10.6273 0.4822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:07 Heat of formation + Delta-G solvation = -59.918106 kcal Electronic energy + Delta-G solvation = -27497.752134 eV Core-core repulsion = 23388.700156 eV Total energy + Delta-G solvation = -4109.051978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.65908 -40.73252 -40.21752 -39.45081 -36.36448 -36.05686 -35.44514 -34.06256 -33.26359 -31.94510 -30.35660 -29.35753 -26.88363 -25.45719 -24.72294 -23.68307 -22.88403 -22.63611 -21.50947 -21.14229 -20.14167 -19.88086 -19.24444 -17.84957 -17.45123 -17.38385 -17.13172 -17.03739 -16.49217 -16.42368 -16.01425 -15.94645 -15.49922 -15.33588 -15.06484 -14.74101 -14.37980 -14.24859 -14.08525 -13.95460 -13.58447 -13.53169 -13.28829 -13.20308 -13.04709 -12.80054 -12.59135 -12.41251 -12.24885 -12.11811 -11.97711 -11.53795 -11.52056 -11.07411 -11.04921 -10.66495 -10.36568 -10.32627 -10.02258 -9.66828 -9.28175 -8.47428 -5.96274 -0.00828 1.36209 1.40466 1.41350 1.55776 1.63587 2.04229 2.04675 2.16635 2.28287 2.70410 3.12546 3.19767 3.57451 3.66803 3.78563 3.81887 3.93549 3.96127 4.07612 4.13029 4.29461 4.31019 4.36564 4.48729 4.55222 4.55544 4.60896 4.69810 4.76604 4.88166 4.89290 4.93712 5.02121 5.09748 5.17259 5.24257 5.31495 5.37110 5.37789 5.40464 5.80765 5.88530 6.10246 6.34838 6.40854 6.59159 6.91998 7.11783 7.55325 8.10314 8.70275 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.002167 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.686680 B =12920.057516 C =14887.891201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.621 6.621 12 C 0.063 3.937 13 N -0.674 5.674 14 C 0.096 3.904 15 C -0.127 4.127 16 C -0.085 4.085 17 C 0.127 3.873 18 N -0.710 5.710 19 C 0.599 3.401 20 O -0.562 6.562 21 C -0.113 4.113 22 C -0.126 4.126 23 C -0.235 4.235 24 C 0.010 3.990 25 O -0.172 6.172 26 C -0.160 4.160 27 C -0.156 4.156 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.342 0.658 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.415 0.585 40 H 0.159 0.841 41 H 0.183 0.817 42 H 0.254 0.746 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.821 -23.582 -9.695 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.215 4.215 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.226 3.774 11 O -0.508 6.508 12 C -0.069 4.069 13 N -0.307 5.307 14 C -0.033 4.033 15 C -0.128 4.128 16 C -0.123 4.123 17 C 0.004 3.996 18 N -0.360 5.360 19 C 0.386 3.614 20 O -0.443 6.443 21 C -0.164 4.164 22 C -0.147 4.147 23 C -0.254 4.254 24 C -0.059 4.059 25 O -0.067 6.067 26 C -0.197 4.197 27 C -0.194 4.194 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.252 0.748 40 H 0.176 0.824 41 H 0.201 0.799 42 H 0.270 0.730 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.905 -23.604 -8.752 26.386 hybrid contribution -0.366 1.129 -1.025 1.568 sum 7.540 -22.474 -9.777 25.643 Atomic orbital electron populations 1.69685 1.06856 1.29238 1.50447 1.26072 0.96575 1.02501 0.96321 0.84855 0.78044 0.77016 0.78326 1.19714 1.19592 1.19594 1.19702 0.92696 0.83990 1.49773 0.90280 1.41955 1.09339 1.04768 1.65095 1.20853 0.88266 0.86118 0.82151 1.90482 1.15767 1.87950 1.56576 1.21540 0.94125 0.88353 1.02884 1.60050 1.18812 1.00578 1.51232 1.21516 0.94420 0.86552 1.00768 1.21158 1.00511 0.97035 0.94066 1.21204 0.97642 1.00694 0.92718 1.21401 0.92651 1.01348 0.84233 1.45898 1.20878 1.56279 1.12938 1.16767 0.84757 0.78379 0.81477 1.90856 1.21662 1.48776 1.82985 1.21876 0.86891 1.09178 0.98504 1.22278 1.01150 0.99322 0.91970 1.22236 0.93639 1.06123 1.03374 1.25396 1.01119 0.98333 0.81094 1.84062 1.25930 1.61427 1.35300 1.22969 0.99790 1.02490 0.94422 1.23107 1.00387 0.93330 1.02566 0.91312 0.77015 0.91997 0.87857 0.83889 0.94484 0.90280 0.89442 0.91323 0.92367 0.90624 0.74806 0.82363 0.79933 0.73019 0.88248 0.89488 0.88071 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 2 C -0.02 -0.82 5.50 84.92 0.47 -0.35 16 3 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -29.84 5.29 -306.99 -1.62 -31.46 16 10 C 0.44 21.09 7.82 87.66 0.69 21.78 16 11 O -0.62 -34.59 15.78 -3.05 -0.05 -34.64 16 12 C 0.06 2.20 6.16 85.56 0.53 2.73 16 13 N -0.67 -21.11 6.10 -517.94 -3.16 -24.26 16 14 C 0.10 2.24 5.55 86.30 0.48 2.71 16 15 C -0.13 -2.45 1.72 -52.18 -0.09 -2.54 16 16 C -0.08 -1.50 5.24 30.60 0.16 -1.34 16 17 C 0.13 2.40 5.51 86.38 0.48 2.88 16 18 N -0.71 -13.76 5.55 -467.09 -2.59 -16.35 16 19 C 0.60 14.49 7.79 86.44 0.67 15.16 16 20 O -0.56 -17.25 16.86 -4.33 -0.07 -17.32 16 21 C -0.11 -2.34 7.13 24.07 0.17 -2.17 16 22 C -0.13 -2.30 10.62 22.39 0.24 -2.06 16 23 C -0.24 -2.76 10.87 22.07 0.24 -2.52 16 24 C 0.01 0.10 12.08 67.10 0.81 0.91 16 25 O -0.17 -2.85 10.40 -4.99 -0.05 -2.90 16 26 C -0.16 -3.00 9.90 30.60 0.30 -2.70 16 27 C -0.16 -2.43 9.58 30.60 0.29 -2.13 16 28 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.40 19.58 7.90 -92.70 -0.73 18.84 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.34 11.27 7.11 -89.69 -0.64 10.64 16 33 H 0.04 0.83 7.67 -2.39 -0.02 0.81 16 34 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 35 H 0.09 1.30 7.94 -2.38 -0.02 1.28 16 36 H 0.07 1.40 6.78 -2.39 -0.02 1.38 16 37 H 0.06 1.29 7.67 -2.38 -0.02 1.27 16 38 H 0.08 1.40 7.83 -2.39 -0.02 1.39 16 39 H 0.42 6.49 8.23 -92.71 -0.76 5.72 16 40 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 42 H 0.25 0.04 8.06 -2.91 -0.02 0.02 16 43 H 0.10 1.70 8.08 -2.38 -0.02 1.68 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 46 H 0.11 1.40 8.00 -2.39 -0.02 1.38 16 Total: -1.00 -75.17 396.53 -0.09 -75.26 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -1.10 Total: 44.20 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 6.25 Total: 12.15 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -7.09 Total: -121.95 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -0.17 Total: -54.86 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -75.17 -0.09 -75.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.339 kcal (2) G-P(sol) polarization free energy of solvation -75.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds