Wall clock time and date at job start Tue Mar 31 2020 18:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00017 * 2 1 4 4 H 1.48497 * 109.46776 * 271.19767 * 3 2 1 5 5 H 1.48497 * 109.46991 * 31.19343 * 3 2 1 6 6 H 1.48499 * 109.47043 * 151.19715 * 3 2 1 7 7 C 1.38813 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00299 * 3.48774 * 7 2 1 9 9 N 1.36934 * 119.99804 * 183.49709 * 7 2 1 10 10 C 1.46499 * 120.00203 * 184.91110 * 9 7 2 11 11 C 1.52998 * 109.47450 * 185.11327 * 10 9 7 12 12 C 1.53007 * 115.54706 * 65.19902 * 11 10 9 13 13 C 1.52998 * 109.47148 * 40.17442 * 12 11 10 14 14 N 1.46494 * 109.47396 * 178.79071 * 13 12 11 15 15 C 1.34773 * 120.00424 * 184.87821 * 14 13 12 16 16 O 1.21287 * 119.99458 * 354.32128 * 15 14 13 17 17 C 1.50696 * 120.00245 * 174.32796 * 15 14 13 18 18 N 1.46501 * 109.47141 * 179.97438 * 17 15 14 19 19 C 1.34782 * 120.00053 * 179.97438 * 18 17 15 20 20 O 1.21689 * 119.99628 * 0.02562 * 19 18 17 21 21 C 1.46652 * 120.00012 * 180.02562 * 19 18 17 22 22 C 1.36538 * 125.99010 * 179.97438 * 21 19 18 23 23 C 1.40366 * 106.71153 * 180.02562 * 22 21 19 24 24 C 1.35127 * 107.11207 * 0.02562 * 23 22 21 25 25 O 1.33930 * 108.77088 * 359.97438 * 24 23 22 26 26 C 1.52994 * 117.52212 * 210.90237 * 11 10 9 27 27 C 1.52998 * 117.49942 * 279.53445 * 11 10 9 28 28 H 0.96999 * 119.99843 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00131 * 4.90661 * 9 7 2 30 30 H 1.09005 * 109.47117 * 65.11136 * 10 9 7 31 31 H 1.08998 * 109.47256 * 305.11291 * 10 9 7 32 32 H 1.08991 * 109.47348 * 280.16670 * 12 11 10 33 33 H 1.09004 * 109.46298 * 160.16702 * 12 11 10 34 34 H 1.08995 * 109.47640 * 58.78146 * 13 12 11 35 35 H 1.09002 * 109.46590 * 298.78926 * 13 12 11 36 36 H 0.96999 * 119.99879 * 4.86660 * 14 13 12 37 37 H 1.09009 * 109.47144 * 59.99731 * 17 15 14 38 38 H 1.08995 * 109.47352 * 299.99852 * 17 15 14 39 39 H 0.97002 * 119.99734 * 0.02562 * 18 17 15 40 40 H 1.08006 * 126.64787 * 0.02562 * 22 21 19 41 41 H 1.07999 * 126.44423 * 180.02562 * 23 22 21 42 42 H 1.08007 * 125.61276 * 180.26583 * 24 23 22 43 43 H 1.09002 * 117.50275 * 214.97447 * 26 11 10 44 44 H 1.09003 * 117.49896 * 359.97438 * 26 11 10 45 45 H 1.09007 * 117.50033 * 359.97293 * 27 11 10 46 46 H 1.09004 * 117.49763 * 144.99580 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4724 2.0610 -1.3998 5 1 1.4606 2.6452 0.7251 6 1 3.5602 1.4330 0.6745 7 6 2.0103 -1.2022 -0.0005 8 1 1.4718 -2.1366 -0.0579 9 7 3.3777 -1.2033 0.0718 10 6 4.1160 -2.4640 -0.0370 11 6 5.6049 -2.2055 0.2019 12 6 5.9749 -1.7315 1.6088 13 6 5.1472 -2.5008 2.6403 14 7 5.5220 -2.0675 3.9886 15 6 4.9916 -2.6806 5.0652 16 8 4.1281 -3.5199 4.9209 17 6 5.4714 -2.3232 6.4483 18 7 4.7449 -3.1216 7.4388 19 6 5.0099 -2.9707 8.7516 20 8 5.8523 -2.1709 9.1143 21 6 4.2830 -3.7704 9.7430 22 6 4.4526 -3.7176 11.0968 23 6 3.5584 -4.6462 11.6521 24 6 2.8909 -5.2182 10.6258 25 8 3.3302 -4.6878 9.4772 26 6 6.6046 -3.1066 -0.5257 27 6 6.4225 -1.6531 -0.9675 28 1 -0.4850 0.8401 0.0004 29 1 3.8576 -0.3694 0.1950 30 1 3.9752 -2.8827 -1.0336 31 1 3.7453 -3.1677 0.7083 32 1 5.7681 -0.6652 1.6991 33 1 7.0352 -1.9123 1.7859 34 1 5.3377 -3.5688 2.5356 35 1 4.0878 -2.3030 2.4765 36 1 6.1521 -1.3395 4.1064 37 1 5.2913 -1.2641 6.6330 38 1 6.5388 -2.5293 6.5272 39 1 4.0737 -3.7594 7.1496 40 1 5.1415 -3.0842 11.6361 41 1 3.4282 -4.8627 12.7022 42 1 2.1256 -5.9748 10.7172 43 1 7.5259 -3.3619 -0.0021 44 1 6.2016 -3.8843 -1.1745 45 1 5.8997 -1.4744 -1.9071 46 1 7.2241 -0.9521 -0.7344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167981283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:17 Heat of formation + Delta-G solvation = -15.736103 kcal Electronic energy + Delta-G solvation = -27763.689577 eV Core-core repulsion = 23656.553474 eV Total energy + Delta-G solvation = -4107.136103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.01985 -40.30328 -39.28742 -38.41474 -35.22813 -34.69060 -34.07823 -33.39704 -31.23073 -30.92790 -30.21883 -27.86955 -26.23314 -23.90029 -22.94727 -22.47203 -22.08778 -21.84532 -20.79424 -20.67048 -19.30099 -18.74391 -17.49367 -17.04660 -16.77187 -16.75714 -16.20852 -16.07487 -15.60971 -15.16853 -15.02308 -14.56650 -14.53275 -14.14450 -13.77997 -13.48014 -13.38275 -13.31155 -13.25713 -13.02258 -12.75937 -12.64954 -12.40932 -11.97892 -11.63503 -11.48407 -11.18317 -10.93265 -10.77913 -10.72924 -10.43461 -10.22898 -10.05448 -9.89634 -9.62881 -9.61907 -9.49308 -9.08958 -9.02731 -8.87913 -7.20900 -5.75845 -3.11080 0.70123 1.98715 2.25414 2.43273 2.67243 2.83804 3.22698 3.34393 3.39443 3.44607 3.89853 4.29679 4.45695 4.52743 4.59019 4.66563 4.80475 4.90053 4.98443 5.01709 5.03045 5.17590 5.25239 5.34792 5.39504 5.52126 5.52406 5.60840 5.65866 5.75540 5.82102 5.85586 5.93286 6.04974 6.13680 6.23137 6.28370 6.31822 6.39115 6.44918 6.64408 6.70595 7.10978 7.31893 7.70264 8.01952 8.02728 8.43545 9.23281 9.95028 10.15987 11.42655 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.002287 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.566915 B =12240.691194 C =13405.518176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.887 3.113 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.189 3.811 11 C -0.128 4.128 12 C -0.086 4.086 13 C 0.117 3.883 14 N -0.722 5.722 15 C 0.506 3.494 16 O -0.530 6.530 17 C 0.099 3.901 18 N -0.706 5.706 19 C 0.607 3.393 20 O -0.523 6.523 21 C -0.080 4.080 22 C -0.118 4.118 23 C -0.228 4.228 24 C -0.001 4.001 25 O -0.161 6.161 26 C -0.171 4.171 27 C -0.170 4.170 28 H 0.259 0.741 29 H 0.362 0.638 30 H 0.025 0.975 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.401 0.599 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.419 0.581 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.212 0.788 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.181 -8.787 17.898 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.062 3.938 11 C -0.129 4.129 12 C -0.124 4.124 13 C -0.005 4.005 14 N -0.373 5.373 15 C 0.290 3.710 16 O -0.407 6.407 17 C -0.028 4.028 18 N -0.360 5.360 19 C 0.394 3.606 20 O -0.402 6.402 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.247 4.247 24 C -0.071 4.071 25 O -0.055 6.055 26 C -0.209 4.209 27 C -0.207 4.207 28 H 0.069 0.931 29 H 0.195 0.805 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.235 0.765 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.258 0.742 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.228 0.772 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.824 -8.986 17.652 24.741 hybrid contribution 0.493 1.330 0.110 1.423 sum 15.317 -7.656 17.763 24.672 Atomic orbital electron populations 1.69711 1.05116 1.25742 1.57578 1.24690 0.95205 0.97149 1.02121 0.86516 0.78941 0.85101 0.77664 1.21195 1.21890 1.20566 1.19051 0.80771 0.94680 1.42644 0.89303 1.42672 1.04050 1.03457 1.89490 1.20223 0.85548 0.89701 0.98366 1.21650 0.94761 1.04370 0.92098 1.21191 0.98614 1.00395 0.92155 1.21578 1.01568 0.98748 0.78649 1.45888 1.47329 1.37682 1.06407 1.20350 0.82208 0.82048 0.86356 1.90754 1.30248 1.33441 1.86226 1.21139 0.98005 0.97713 0.85931 1.45588 1.42440 1.43115 1.04896 1.16462 0.81716 0.81499 0.80971 1.90889 1.33191 1.36041 1.80037 1.21931 0.97580 0.98466 0.95186 1.21986 1.00179 0.99643 0.92058 1.21885 1.00720 1.01170 1.00959 1.24494 1.00571 0.99873 0.82200 1.84116 1.43724 1.43470 1.34238 1.23030 1.00125 0.93937 1.03801 1.22969 1.02351 0.96182 0.99213 0.93104 0.80467 0.95738 0.94424 0.90900 0.91781 0.91270 0.88951 0.76532 0.87846 0.87878 0.74209 0.82126 0.82473 0.77173 0.89145 0.88731 0.88425 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 22.10 27.90 -169.99 -4.74 17.36 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.41 6.30 56.52 0.36 -6.05 16 7 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.31 5.29 -59.91 -0.32 -17.62 16 10 C 0.19 3.54 5.32 -4.04 -0.02 3.52 16 11 C -0.13 -1.82 1.83 -154.51 -0.28 -2.10 16 12 C -0.09 -1.07 5.37 -26.73 -0.14 -1.21 16 13 C 0.12 1.62 4.80 -4.05 -0.02 1.60 16 14 N -0.72 -8.14 5.55 -60.30 -0.33 -8.48 16 15 C 0.51 6.39 7.89 -10.99 -0.09 6.30 16 16 O -0.53 -8.86 15.68 5.55 0.09 -8.78 16 17 C 0.10 0.99 6.16 -5.20 -0.03 0.96 16 18 N -0.71 -7.99 5.52 -62.81 -0.35 -8.34 16 19 C 0.61 7.33 7.79 -12.86 -0.10 7.23 16 20 O -0.52 -7.37 16.86 5.20 0.09 -7.28 16 21 C -0.08 -0.86 7.13 -36.80 -0.26 -1.13 16 22 C -0.12 -1.09 10.62 -39.39 -0.42 -1.51 16 23 C -0.23 -1.61 10.87 -39.89 -0.43 -2.04 16 24 C 0.00 -0.01 12.08 29.63 0.36 0.35 16 25 O -0.16 -1.59 10.40 4.98 0.05 -1.54 16 26 C -0.17 -2.01 9.87 -26.73 -0.26 -2.27 16 27 C -0.17 -2.20 9.97 -26.73 -0.27 -2.47 16 28 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 29 H 0.36 8.18 5.46 -40.82 -0.22 7.96 16 30 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.04 0.73 6.69 -51.93 -0.35 0.39 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.67 6.85 -51.93 -0.36 1.32 16 36 H 0.40 3.21 8.48 -40.82 -0.35 2.86 16 37 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.42 4.93 7.19 -40.82 -0.29 4.63 16 40 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 41 H 0.16 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.21 0.58 8.06 -52.48 -0.42 0.16 16 43 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 393.69 15.07 5.93 5.93 Total: -1.00 -36.10 393.69 -7.68 -43.78 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -6.65 Total: 13.42 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.23 Total: 0.29 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.22 Total: -63.18 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.23 Total: -17.60 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.74 Total: 17.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.10 -7.68 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167981283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.042 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds