Wall clock time and date at job start Tue Mar 31 2020 18:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00017 * 2 1 4 4 H 1.48497 * 109.46776 * 271.19767 * 3 2 1 5 5 H 1.48497 * 109.46991 * 31.19343 * 3 2 1 6 6 H 1.48499 * 109.47043 * 151.19715 * 3 2 1 7 7 C 1.38813 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00299 * 3.48774 * 7 2 1 9 9 N 1.36934 * 119.99804 * 183.49709 * 7 2 1 10 10 C 1.46499 * 120.00203 * 184.91110 * 9 7 2 11 11 C 1.52998 * 109.47450 * 185.11327 * 10 9 7 12 12 C 1.53007 * 115.54706 * 65.19902 * 11 10 9 13 13 C 1.52998 * 109.47148 * 40.17442 * 12 11 10 14 14 N 1.46494 * 109.47396 * 178.79071 * 13 12 11 15 15 C 1.34773 * 120.00424 * 184.87821 * 14 13 12 16 16 O 1.21287 * 119.99458 * 354.32128 * 15 14 13 17 17 C 1.50696 * 120.00245 * 174.32796 * 15 14 13 18 18 N 1.46501 * 109.47141 * 179.97438 * 17 15 14 19 19 C 1.34782 * 120.00053 * 179.97438 * 18 17 15 20 20 O 1.21689 * 119.99628 * 0.02562 * 19 18 17 21 21 C 1.46652 * 120.00012 * 180.02562 * 19 18 17 22 22 C 1.36538 * 125.99010 * 179.97438 * 21 19 18 23 23 C 1.40366 * 106.71153 * 180.02562 * 22 21 19 24 24 C 1.35127 * 107.11207 * 0.02562 * 23 22 21 25 25 O 1.33930 * 108.77088 * 359.97438 * 24 23 22 26 26 C 1.52994 * 117.52212 * 210.90237 * 11 10 9 27 27 C 1.52998 * 117.49942 * 279.53445 * 11 10 9 28 28 H 0.96999 * 119.99843 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00131 * 4.90661 * 9 7 2 30 30 H 1.09005 * 109.47117 * 65.11136 * 10 9 7 31 31 H 1.08998 * 109.47256 * 305.11291 * 10 9 7 32 32 H 1.08991 * 109.47348 * 280.16670 * 12 11 10 33 33 H 1.09004 * 109.46298 * 160.16702 * 12 11 10 34 34 H 1.08995 * 109.47640 * 58.78146 * 13 12 11 35 35 H 1.09002 * 109.46590 * 298.78926 * 13 12 11 36 36 H 0.96999 * 119.99879 * 4.86660 * 14 13 12 37 37 H 1.09009 * 109.47144 * 59.99731 * 17 15 14 38 38 H 1.08995 * 109.47352 * 299.99852 * 17 15 14 39 39 H 0.97002 * 119.99734 * 0.02562 * 18 17 15 40 40 H 1.08006 * 126.64787 * 0.02562 * 22 21 19 41 41 H 1.07999 * 126.44423 * 180.02562 * 23 22 21 42 42 H 1.08007 * 125.61276 * 180.26583 * 24 23 22 43 43 H 1.09002 * 117.50275 * 214.97447 * 26 11 10 44 44 H 1.09003 * 117.49896 * 359.97438 * 26 11 10 45 45 H 1.09007 * 117.50033 * 359.97293 * 27 11 10 46 46 H 1.09004 * 117.49763 * 144.99580 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4724 2.0610 -1.3998 5 1 1.4606 2.6452 0.7251 6 1 3.5602 1.4330 0.6745 7 6 2.0103 -1.2022 -0.0005 8 1 1.4718 -2.1366 -0.0579 9 7 3.3777 -1.2033 0.0718 10 6 4.1160 -2.4640 -0.0370 11 6 5.6049 -2.2055 0.2019 12 6 5.9749 -1.7315 1.6088 13 6 5.1472 -2.5008 2.6403 14 7 5.5220 -2.0675 3.9886 15 6 4.9916 -2.6806 5.0652 16 8 4.1281 -3.5199 4.9209 17 6 5.4714 -2.3232 6.4483 18 7 4.7449 -3.1216 7.4388 19 6 5.0099 -2.9707 8.7516 20 8 5.8523 -2.1709 9.1143 21 6 4.2830 -3.7704 9.7430 22 6 4.4526 -3.7176 11.0968 23 6 3.5584 -4.6462 11.6521 24 6 2.8909 -5.2182 10.6258 25 8 3.3302 -4.6878 9.4772 26 6 6.6046 -3.1066 -0.5257 27 6 6.4225 -1.6531 -0.9675 28 1 -0.4850 0.8401 0.0004 29 1 3.8576 -0.3694 0.1950 30 1 3.9752 -2.8827 -1.0336 31 1 3.7453 -3.1677 0.7083 32 1 5.7681 -0.6652 1.6991 33 1 7.0352 -1.9123 1.7859 34 1 5.3377 -3.5688 2.5356 35 1 4.0878 -2.3030 2.4765 36 1 6.1521 -1.3395 4.1064 37 1 5.2913 -1.2641 6.6330 38 1 6.5388 -2.5293 6.5272 39 1 4.0737 -3.7594 7.1496 40 1 5.1415 -3.0842 11.6361 41 1 3.4282 -4.8627 12.7022 42 1 2.1256 -5.9748 10.7172 43 1 7.5259 -3.3619 -0.0021 44 1 6.2016 -3.8843 -1.1745 45 1 5.8997 -1.4744 -1.9071 46 1 7.2241 -0.9521 -0.7344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167981283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:16 Heat of formation + Delta-G solvation = -43.943714 kcal Electronic energy + Delta-G solvation = -27764.912751 eV Core-core repulsion = 23656.553474 eV Total energy + Delta-G solvation = -4108.359276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.67306 -41.28897 -40.27617 -39.56086 -36.26542 -35.95417 -35.67562 -34.05311 -33.23336 -31.93209 -31.05909 -28.76839 -27.95035 -24.81401 -24.27414 -23.78156 -23.04210 -22.72108 -21.81543 -21.46571 -20.46847 -19.95200 -19.13397 -17.91806 -17.74540 -17.52357 -17.08144 -17.00634 -16.60652 -16.55865 -16.34204 -15.98630 -15.56177 -15.28142 -15.15079 -14.81203 -14.47563 -14.25200 -14.13816 -14.00628 -13.94319 -13.70980 -13.57254 -13.42938 -13.04137 -12.87250 -12.60077 -12.22905 -12.19031 -11.91519 -11.83132 -11.66541 -11.23228 -11.07567 -11.07112 -10.93401 -10.57230 -10.51462 -10.15033 -9.69273 -9.27703 -8.03354 -5.36233 -0.02898 1.34105 1.39154 1.40692 1.42842 1.47473 1.49082 1.91273 2.01218 2.33464 2.47540 2.84887 3.27466 3.49567 3.69419 3.71546 3.77966 3.93963 3.94345 4.07300 4.08855 4.12734 4.24287 4.27024 4.40359 4.49144 4.59853 4.63214 4.86382 4.88142 4.92139 4.94473 4.95856 5.02632 5.09828 5.14744 5.22532 5.30992 5.36483 5.37614 5.39950 5.75092 5.79316 6.20823 6.24181 6.40289 6.81511 7.08490 7.09141 7.84387 8.06673 9.18712 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.002287 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.566915 B =12240.691194 C =13405.518176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.245 1.245 7 C -0.232 4.232 8 H 0.048 0.952 9 N -0.747 5.747 10 C 0.187 3.813 11 C -0.148 4.148 12 C -0.074 4.074 13 C 0.125 3.875 14 N -0.707 5.707 15 C 0.505 3.495 16 O -0.578 6.578 17 C 0.105 3.895 18 N -0.709 5.709 19 C 0.607 3.393 20 O -0.551 6.551 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.233 4.233 24 C 0.008 3.992 25 O -0.178 6.178 26 C -0.148 4.148 27 C -0.166 4.166 28 H 0.257 0.743 29 H 0.368 0.632 30 H 0.015 0.985 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.420 0.580 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.416 0.584 40 H 0.166 0.834 41 H 0.186 0.814 42 H 0.251 0.749 43 H 0.121 0.879 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.512 -8.297 19.055 27.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.788 3.212 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.170 1.170 7 C -0.363 4.363 8 H 0.066 0.934 9 N -0.393 5.393 10 C 0.061 3.939 11 C -0.149 4.149 12 C -0.112 4.112 13 C 0.001 3.999 14 N -0.360 5.360 15 C 0.291 3.709 16 O -0.458 6.458 17 C -0.021 4.021 18 N -0.362 5.362 19 C 0.395 3.605 20 O -0.432 6.432 21 C -0.168 4.168 22 C -0.138 4.138 23 C -0.251 4.251 24 C -0.062 4.062 25 O -0.073 6.073 26 C -0.185 4.185 27 C -0.203 4.203 28 H 0.066 0.934 29 H 0.202 0.798 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.258 0.742 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.254 0.746 40 H 0.183 0.817 41 H 0.204 0.796 42 H 0.267 0.733 43 H 0.139 0.861 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.237 -8.498 18.800 27.536 hybrid contribution -0.645 0.981 -0.224 1.195 sum 17.593 -7.517 18.575 26.665 Atomic orbital electron populations 1.69914 1.07352 1.26670 1.59804 1.25582 0.96144 1.01501 1.02647 0.85322 0.78735 0.79148 0.78015 1.20563 1.22510 1.16951 1.18996 0.83124 0.93166 1.40993 0.93420 1.42578 1.02220 1.05336 1.89149 1.20278 0.88876 0.87573 0.97183 1.21479 0.91809 1.07648 0.93972 1.21146 1.00402 0.99541 0.90111 1.21298 0.99111 0.99043 0.80434 1.45726 1.47146 1.37864 1.05225 1.20828 0.81346 0.81178 0.87512 1.90737 1.32431 1.35640 1.86966 1.21237 0.99006 0.98162 0.83741 1.45655 1.42364 1.43059 1.05080 1.16617 0.81439 0.81269 0.81160 1.90854 1.34510 1.37364 1.80442 1.21828 0.99312 1.00181 0.95482 1.22291 1.00186 0.99664 0.91704 1.22252 0.99978 1.00428 1.02474 1.25409 1.00197 0.99346 0.81212 1.84106 1.43813 1.43644 1.35766 1.23141 0.99789 0.93244 1.02331 1.23044 1.02124 0.97697 0.97465 0.93411 0.79767 0.96670 0.95928 0.91301 0.87746 0.91664 0.93977 0.74216 0.86494 0.85388 0.74622 0.81653 0.79635 0.73302 0.86085 0.88988 0.90004 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.86 13.97 21.65 0.30 -64.56 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.96 45.77 27.90 68.60 1.91 47.69 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.25 -10.16 6.30 99.48 0.63 -9.53 16 7 C -0.23 -13.54 10.47 84.03 0.88 -12.66 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.75 -34.71 5.29 -343.45 -1.82 -36.53 16 10 C 0.19 7.11 5.32 86.38 0.46 7.57 16 11 C -0.15 -3.89 1.83 -52.18 -0.10 -3.99 16 12 C -0.07 -1.63 5.37 30.60 0.16 -1.46 16 13 C 0.12 3.37 4.80 86.38 0.41 3.79 16 14 N -0.71 -14.93 5.55 -463.08 -2.57 -17.50 16 15 C 0.51 12.58 7.89 87.66 0.69 13.27 16 16 O -0.58 -20.00 15.68 -3.05 -0.05 -20.04 16 17 C 0.10 1.99 6.16 85.63 0.53 2.51 16 18 N -0.71 -16.18 5.52 -470.84 -2.60 -18.78 16 19 C 0.61 14.82 7.79 86.44 0.67 15.49 16 20 O -0.55 -15.51 16.86 -4.31 -0.07 -15.58 16 21 C -0.12 -2.54 7.13 24.07 0.17 -2.37 16 22 C -0.12 -2.10 10.62 22.39 0.24 -1.86 16 23 C -0.23 -2.80 10.87 22.07 0.24 -2.56 16 24 C 0.01 0.09 12.08 67.10 0.81 0.90 16 25 O -0.18 -3.47 10.40 -5.08 -0.05 -3.52 16 26 C -0.15 -2.94 9.87 30.59 0.30 -2.64 16 27 C -0.17 -3.73 9.97 30.59 0.31 -3.43 16 28 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 29 H 0.37 16.11 5.46 -92.71 -0.51 15.60 16 30 H 0.02 0.61 8.09 -2.38 -0.02 0.59 16 31 H 0.02 0.93 6.69 -2.39 -0.02 0.91 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.50 7.95 -2.38 -0.02 1.48 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.58 6.85 -2.39 -0.02 1.56 16 36 H 0.42 5.52 8.48 -92.71 -0.79 4.74 16 37 H 0.12 1.93 8.14 -2.38 -0.02 1.92 16 38 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.42 10.19 7.19 -92.71 -0.67 9.52 16 40 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 41 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.25 0.58 8.06 -2.91 -0.02 0.55 16 43 H 0.12 1.74 8.09 -2.39 -0.02 1.72 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.08 2.11 8.14 -2.38 -0.02 2.10 16 46 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -84.00 393.69 0.29 -83.70 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -1.01 Total: 36.16 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.25 Total: 8.97 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -6.68 Total: -137.37 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.17 Total: -39.15 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.91 Total: 47.69 kcal Total: -84.00 0.29 -83.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167981283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.761 kcal (2) G-P(sol) polarization free energy of solvation -83.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds