Wall clock time and date at job start Tue Mar 31 2020 18:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46977 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46946 * 119.99939 * 3 2 1 7 7 C 1.38815 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00358 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 359.95842 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 13 13 O 1.42900 * 111.00244 * 204.91582 * 11 10 9 14 14 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 15 15 H 1.09000 * 110.69068 * 277.04987 * 14 11 10 16 16 N 1.46495 * 110.85076 * 153.69955 * 14 11 10 17 17 C 1.34776 * 119.99803 * 160.08868 * 16 14 11 18 18 O 1.21285 * 120.00103 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99890 * 180.02562 * 17 16 14 20 20 C 1.53001 * 109.46956 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46995 * 180.02562 * 20 19 17 22 22 N 1.46500 * 109.47062 * 180.02562 * 21 20 19 23 23 C 1.35767 * 119.62630 * 89.99651 * 22 21 20 24 24 C 1.35343 * 120.70315 * 180.02562 * 23 22 21 25 25 C 1.40199 * 119.95050 * 359.97438 * 24 23 22 26 26 C 1.36403 * 119.26255 * 0.02562 * 25 24 23 27 27 C 1.34651 * 119.62536 * 269.72653 * 22 21 20 28 28 O 1.22063 * 119.98599 * 359.97438 * 27 22 21 29 29 C 1.47018 * 125.64999 * 180.02562 * 9 7 2 30 30 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 32 32 H 1.09003 * 110.36599 * 85.32658 * 10 9 7 33 33 H 0.96701 * 114.00208 * 298.55206 * 13 11 10 34 34 H 0.96997 * 120.00433 * 340.08762 * 16 14 11 35 35 H 1.08998 * 109.46987 * 299.99488 * 19 17 16 36 36 H 1.09000 * 109.47441 * 59.99528 * 19 17 16 37 37 H 1.08998 * 109.47063 * 299.99697 * 20 19 17 38 38 H 1.09000 * 109.47222 * 59.99649 * 20 19 17 39 39 H 1.08998 * 109.46829 * 299.99671 * 21 20 19 40 40 H 1.08993 * 109.47533 * 60.00089 * 21 20 19 41 41 H 1.08006 * 119.65014 * 359.97438 * 23 22 21 42 42 H 1.08008 * 120.02691 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.36708 * 179.97438 * 25 24 23 44 44 H 1.07993 * 120.34611 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.88241 * 298.32312 * 29 9 7 46 46 H 1.09000 * 109.88049 * 59.33441 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0009 11 6 -0.4016 -3.9319 0.6138 12 1 -0.3519 -3.8970 1.7021 13 8 -1.6568 -4.4571 0.1771 14 6 0.7807 -4.7551 0.0310 15 1 0.5484 -5.1034 -0.9754 16 7 1.1138 -5.8812 0.9069 17 6 1.8081 -6.9296 0.4219 18 8 2.1567 -6.9410 -0.7397 19 6 2.1502 -8.0883 1.3228 20 6 2.9345 -9.1361 0.5303 21 6 3.2813 -10.3128 1.4447 22 7 4.0327 -11.3158 0.6861 23 6 5.3877 -11.2446 0.6380 24 6 6.1035 -12.1594 -0.0567 25 6 5.4453 -13.1944 -0.7358 26 6 4.0839 -13.2643 -0.6863 27 6 3.3721 -12.3010 0.0489 28 8 2.1539 -12.3549 0.1060 29 6 1.9317 -3.7275 0.0016 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5993 -1.7584 0.6159 32 1 -0.5275 -2.4875 -1.0175 33 1 -2.4190 -3.9214 0.4364 34 1 0.8347 -5.8722 1.8358 35 1 2.7567 -7.7338 2.1562 36 1 1.2323 -8.5346 1.7053 37 1 2.3277 -9.4906 -0.3029 38 1 3.8524 -8.6901 0.1474 39 1 3.8879 -9.9586 2.2782 40 1 2.3632 -10.7587 1.8271 41 1 5.8997 -10.4491 1.1590 42 1 7.1810 -12.0921 -0.0880 43 1 6.0098 -13.9277 -1.2925 44 1 3.5591 -14.0544 -1.2025 45 1 2.5283 -3.8651 -0.9002 46 1 2.5602 -3.8492 0.8838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195262791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:04 Heat of formation + Delta-G solvation = -58.458936 kcal Electronic energy + Delta-G solvation = -28135.140113 eV Core-core repulsion = 24026.151409 eV Total energy + Delta-G solvation = -4108.988704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.62309 -39.76102 -37.90121 -37.15835 -35.82184 -35.09008 -34.05109 -33.02903 -31.71293 -30.18251 -28.76407 -27.75539 -26.73452 -24.65285 -24.17295 -23.40244 -21.99506 -20.80529 -20.33342 -19.90473 -18.04369 -17.61793 -17.21315 -17.01702 -16.68289 -16.44100 -15.91143 -15.84836 -15.58941 -15.01124 -14.70973 -14.47983 -14.23000 -13.89929 -13.76123 -13.41328 -13.09075 -12.88127 -12.67039 -12.53034 -12.30277 -12.20061 -12.10141 -11.88954 -11.87585 -11.47144 -11.29519 -11.07364 -11.03340 -10.84853 -10.43688 -10.24327 -10.19073 -9.97025 -9.80671 -9.71491 -9.31111 -8.79928 -8.75173 -8.29304 -6.95894 -5.75625 -3.18152 0.50515 1.56607 2.29772 2.78648 3.26878 3.35659 3.39077 3.40383 3.41994 4.19321 4.26321 4.36678 4.51800 4.54820 4.58776 4.66802 4.76188 4.89613 4.92212 5.02949 5.14042 5.16927 5.26585 5.35456 5.38809 5.61117 5.62938 5.64847 5.73567 5.76303 5.84492 5.94063 5.98946 6.07305 6.15815 6.19708 6.46061 6.64217 6.77049 6.90386 7.27726 7.48316 7.64268 7.71605 7.76586 8.07322 8.21942 8.40033 9.10311 9.70847 10.33339 11.28700 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021510 B = 0.001981 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.398933 B =14129.306960 C =15041.915807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.919 3.081 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.129 3.871 11 C 0.067 3.933 12 H 0.062 0.938 13 O -0.567 6.567 14 C 0.141 3.859 15 H 0.098 0.902 16 N -0.715 5.715 17 C 0.512 3.488 18 O -0.540 6.540 19 C -0.136 4.136 20 C -0.118 4.118 21 C 0.089 3.911 22 N -0.494 5.494 23 C 0.137 3.863 24 C -0.237 4.237 25 C -0.017 4.017 26 C -0.246 4.246 27 C 0.511 3.489 28 O -0.550 6.550 29 C 0.131 3.869 30 H 0.254 0.746 31 H 0.113 0.887 32 H 0.025 0.975 33 H 0.378 0.622 34 H 0.398 0.602 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.162 0.838 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.147 0.853 45 H 0.033 0.967 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.086 -22.878 6.900 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.749 3.251 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.003 3.997 11 C 0.007 3.993 12 H 0.079 0.921 13 O -0.372 6.372 14 C 0.037 3.963 15 H 0.116 0.884 16 N -0.366 5.366 17 C 0.298 3.702 18 O -0.417 6.417 19 C -0.177 4.177 20 C -0.156 4.156 21 C -0.033 4.033 22 N -0.204 5.204 23 C 0.009 3.991 24 C -0.261 4.261 25 C -0.039 4.039 26 C -0.268 4.268 27 C 0.313 3.687 28 O -0.433 6.433 29 C 0.004 3.996 30 H 0.065 0.935 31 H 0.131 0.869 32 H 0.043 0.957 33 H 0.225 0.775 34 H 0.232 0.768 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.180 0.820 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.164 0.836 45 H 0.051 0.949 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.853 -23.130 5.858 25.449 hybrid contribution 0.153 1.338 0.586 1.469 sum 9.007 -21.791 6.443 24.443 Atomic orbital electron populations 1.69717 1.04952 1.25136 1.57526 1.24812 0.95800 0.97864 1.02167 0.86086 0.78385 0.82665 0.77972 1.21087 1.21496 1.21083 1.19055 0.90576 0.82132 1.43371 0.90262 1.44282 1.01473 0.99802 1.87228 1.22579 0.85652 0.91967 0.99533 1.23685 0.82626 0.96053 0.96972 0.92052 1.86408 1.16011 1.53344 1.81393 1.22034 0.94085 0.85260 0.94964 0.88361 1.45982 1.56671 1.19583 1.14319 1.20504 0.77846 0.83304 0.88585 1.90724 1.52982 1.79987 1.17993 1.21544 1.02448 0.94722 0.98996 1.21639 1.01787 0.93574 0.98646 1.22091 0.98510 0.88480 0.94193 1.45569 1.06679 1.25254 1.42884 1.22013 0.82699 0.98336 0.96016 1.20667 1.00958 0.98659 1.05773 1.21451 0.94341 0.95326 0.92778 1.22149 0.94953 1.02846 1.06810 1.17193 0.88374 0.81952 0.81178 1.90977 1.12907 1.75653 1.63733 1.21613 0.93733 0.85332 0.98938 0.93505 0.86905 0.95663 0.77472 0.76763 0.88584 0.88483 0.90079 0.90486 0.88884 0.87943 0.82041 0.83780 0.84877 0.83559 0.94931 0.95286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.09 55.49 0.56 -25.64 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.60 -15.27 3.39 -170.07 -0.58 -15.84 16 10 C 0.13 3.04 5.62 -2.53 -0.01 3.02 16 11 C 0.07 1.25 4.05 -24.44 -0.10 1.15 16 12 H 0.06 1.05 8.01 -51.93 -0.42 0.64 16 13 O -0.57 -9.75 13.48 -35.23 -0.47 -10.22 16 14 C 0.14 2.67 2.99 -65.96 -0.20 2.47 16 15 H 0.10 2.10 7.70 -51.93 -0.40 1.70 16 16 N -0.71 -10.48 5.13 -51.90 -0.27 -10.75 16 17 C 0.51 7.49 7.83 -10.98 -0.09 7.40 16 18 O -0.54 -10.33 15.71 5.55 0.09 -10.24 16 19 C -0.14 -1.26 5.70 -27.88 -0.16 -1.42 16 20 C -0.12 -1.17 4.83 -26.73 -0.13 -1.30 16 21 C 0.09 0.67 5.34 -4.04 -0.02 0.65 16 22 N -0.49 -4.33 2.58 -119.77 -0.31 -4.64 16 23 C 0.14 0.80 10.28 -16.84 -0.17 0.63 16 24 C -0.24 -1.27 10.01 -39.88 -0.40 -1.67 16 25 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 26 C -0.25 -2.27 9.99 -39.38 -0.39 -2.67 16 27 C 0.51 6.06 7.41 -15.45 -0.11 5.95 16 28 O -0.55 -8.70 16.64 4.86 0.08 -8.61 16 29 C 0.13 2.84 6.98 -3.07 -0.02 2.81 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.38 4.99 9.11 45.56 0.42 5.41 16 34 H 0.40 4.59 8.53 -40.82 -0.35 4.24 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.09 0.38 8.01 -51.93 -0.42 -0.03 16 40 H 0.10 0.87 7.38 -51.93 -0.38 0.49 16 41 H 0.16 0.41 8.04 -52.48 -0.42 -0.01 16 42 H 0.14 0.41 8.06 -52.48 -0.42 -0.02 16 43 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 44 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -37.41 384.53 -8.62 -46.04 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.04 Total: 7.65 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -2.46 Total: 9.81 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.59 Total: -56.87 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.31 Total: -29.08 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.41 -8.62 -46.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195262791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.423 kcal (2) G-P(sol) polarization free energy of solvation -37.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds