Wall clock time and date at job start Tue Mar 31 2020 18:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46977 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46946 * 119.99939 * 3 2 1 7 7 C 1.38815 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00358 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 359.95842 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 13 13 O 1.42900 * 111.00244 * 204.91582 * 11 10 9 14 14 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 15 15 H 1.09000 * 110.69068 * 277.04987 * 14 11 10 16 16 N 1.46495 * 110.85076 * 153.69955 * 14 11 10 17 17 C 1.34776 * 119.99803 * 160.08868 * 16 14 11 18 18 O 1.21285 * 120.00103 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99890 * 180.02562 * 17 16 14 20 20 C 1.53001 * 109.46956 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46995 * 180.02562 * 20 19 17 22 22 N 1.46500 * 109.47062 * 180.02562 * 21 20 19 23 23 C 1.35767 * 119.62630 * 89.99651 * 22 21 20 24 24 C 1.35343 * 120.70315 * 180.02562 * 23 22 21 25 25 C 1.40199 * 119.95050 * 359.97438 * 24 23 22 26 26 C 1.36403 * 119.26255 * 0.02562 * 25 24 23 27 27 C 1.34651 * 119.62536 * 269.72653 * 22 21 20 28 28 O 1.22063 * 119.98599 * 359.97438 * 27 22 21 29 29 C 1.47018 * 125.64999 * 180.02562 * 9 7 2 30 30 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 32 32 H 1.09003 * 110.36599 * 85.32658 * 10 9 7 33 33 H 0.96701 * 114.00208 * 298.55206 * 13 11 10 34 34 H 0.96997 * 120.00433 * 340.08762 * 16 14 11 35 35 H 1.08998 * 109.46987 * 299.99488 * 19 17 16 36 36 H 1.09000 * 109.47441 * 59.99528 * 19 17 16 37 37 H 1.08998 * 109.47063 * 299.99697 * 20 19 17 38 38 H 1.09000 * 109.47222 * 59.99649 * 20 19 17 39 39 H 1.08998 * 109.46829 * 299.99671 * 21 20 19 40 40 H 1.08993 * 109.47533 * 60.00089 * 21 20 19 41 41 H 1.08006 * 119.65014 * 359.97438 * 23 22 21 42 42 H 1.08008 * 120.02691 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.36708 * 179.97438 * 25 24 23 44 44 H 1.07993 * 120.34611 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.88241 * 298.32312 * 29 9 7 46 46 H 1.09000 * 109.88049 * 59.33441 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0009 11 6 -0.4016 -3.9319 0.6138 12 1 -0.3519 -3.8970 1.7021 13 8 -1.6568 -4.4571 0.1771 14 6 0.7807 -4.7551 0.0310 15 1 0.5484 -5.1034 -0.9754 16 7 1.1138 -5.8812 0.9069 17 6 1.8081 -6.9296 0.4219 18 8 2.1567 -6.9410 -0.7397 19 6 2.1502 -8.0883 1.3228 20 6 2.9345 -9.1361 0.5303 21 6 3.2813 -10.3128 1.4447 22 7 4.0327 -11.3158 0.6861 23 6 5.3877 -11.2446 0.6380 24 6 6.1035 -12.1594 -0.0567 25 6 5.4453 -13.1944 -0.7358 26 6 4.0839 -13.2643 -0.6863 27 6 3.3721 -12.3010 0.0489 28 8 2.1539 -12.3549 0.1060 29 6 1.9317 -3.7275 0.0016 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5993 -1.7584 0.6159 32 1 -0.5275 -2.4875 -1.0175 33 1 -2.4190 -3.9214 0.4364 34 1 0.8347 -5.8722 1.8358 35 1 2.7567 -7.7338 2.1562 36 1 1.2323 -8.5346 1.7053 37 1 2.3277 -9.4906 -0.3029 38 1 3.8524 -8.6901 0.1474 39 1 3.8879 -9.9586 2.2782 40 1 2.3632 -10.7587 1.8271 41 1 5.8997 -10.4491 1.1590 42 1 7.1810 -12.0921 -0.0880 43 1 6.0098 -13.9277 -1.2925 44 1 3.5591 -14.0544 -1.2025 45 1 2.5283 -3.8651 -0.9002 46 1 2.5602 -3.8492 0.8838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195262791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:03 Heat of formation + Delta-G solvation = -88.180953 kcal Electronic energy + Delta-G solvation = -28136.428956 eV Core-core repulsion = 24026.151409 eV Total energy + Delta-G solvation = -4110.277547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.28624 -41.07170 -39.44565 -37.94825 -36.71386 -36.49244 -35.56866 -33.92065 -33.45873 -30.78961 -30.36955 -29.11860 -28.06689 -26.34216 -24.89778 -24.21458 -22.81002 -22.46343 -21.77223 -21.26036 -19.15420 -18.71595 -18.38548 -18.24934 -17.72417 -17.37492 -17.19196 -16.75613 -16.64031 -16.47652 -15.74667 -15.64292 -15.30369 -15.15299 -14.93907 -14.84734 -14.62161 -14.02845 -13.86217 -13.78800 -13.30177 -13.21727 -13.13219 -13.05406 -12.86362 -12.82849 -12.70354 -12.65636 -12.55780 -12.11300 -11.94240 -11.81555 -11.43710 -11.21186 -11.06103 -10.97471 -10.81060 -10.76597 -10.18020 -8.99627 -8.93840 -7.83470 -5.30033 -0.04469 0.95186 1.46828 1.50242 1.56506 1.63533 1.67904 2.13105 2.46587 2.72048 3.05374 3.28100 3.58749 3.62750 3.69084 3.78754 3.85739 3.96597 4.01847 4.03935 4.17370 4.19067 4.30476 4.34816 4.41390 4.45314 4.54624 4.57267 4.59841 4.67474 4.82209 4.96097 5.01860 5.10380 5.18744 5.25456 5.35008 5.41989 5.42921 5.46700 5.65190 5.70438 6.13685 6.19080 6.55466 6.83094 7.02010 7.02744 7.26735 7.67171 8.29540 9.18309 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021510 B = 0.001981 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.398933 B =14129.306960 C =15041.915807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.985 3.015 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.619 5.619 10 C 0.132 3.868 11 C 0.091 3.909 12 H 0.090 0.910 13 O -0.570 6.570 14 C 0.154 3.846 15 H 0.068 0.932 16 N -0.703 5.703 17 C 0.506 3.494 18 O -0.592 6.592 19 C -0.122 4.122 20 C -0.111 4.111 21 C 0.091 3.909 22 N -0.494 5.494 23 C 0.133 3.867 24 C -0.237 4.237 25 C 0.005 3.995 26 C -0.289 4.289 27 C 0.490 3.510 28 O -0.614 6.614 29 C 0.134 3.866 30 H 0.251 0.749 31 H 0.093 0.907 32 H -0.011 1.011 33 H 0.397 0.603 34 H 0.419 0.581 35 H 0.143 0.857 36 H 0.118 0.882 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.143 0.857 40 H 0.089 0.911 41 H 0.205 0.795 42 H 0.180 0.820 43 H 0.164 0.836 44 H 0.139 0.861 45 H 0.010 0.990 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.788 -23.295 9.520 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.813 3.187 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.373 4.373 8 H 0.100 0.900 9 N -0.347 5.347 10 C 0.006 3.994 11 C 0.031 3.969 12 H 0.108 0.892 13 O -0.378 6.378 14 C 0.047 3.953 15 H 0.086 0.914 16 N -0.355 5.355 17 C 0.294 3.706 18 O -0.472 6.472 19 C -0.162 4.162 20 C -0.150 4.150 21 C -0.029 4.029 22 N -0.203 5.203 23 C 0.007 3.993 24 C -0.259 4.259 25 C -0.017 4.017 26 C -0.311 4.311 27 C 0.295 3.705 28 O -0.502 6.502 29 C 0.007 3.993 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.007 0.993 33 H 0.247 0.753 34 H 0.256 0.744 35 H 0.161 0.839 36 H 0.136 0.864 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.161 0.839 40 H 0.107 0.893 41 H 0.222 0.778 42 H 0.198 0.802 43 H 0.181 0.819 44 H 0.157 0.843 45 H 0.028 0.972 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.581 -23.567 8.529 27.609 hybrid contribution -0.576 1.464 -0.303 1.602 sum 11.005 -22.103 8.226 26.025 Atomic orbital electron populations 1.69945 1.06155 1.25508 1.58030 1.25667 0.96760 1.01043 1.02096 0.85059 0.77133 0.78319 0.78238 1.20879 1.21708 1.19705 1.19411 0.91081 0.83338 1.43495 0.90025 1.44551 1.02367 1.00658 1.87130 1.22404 0.84794 0.94751 0.97447 1.23328 0.83185 0.92536 0.97860 0.89196 1.86383 1.16185 1.53515 1.81696 1.21535 0.93213 0.85904 0.94609 0.91419 1.45795 1.56623 1.18330 1.14748 1.21542 0.76422 0.84023 0.88584 1.90712 1.54879 1.80987 1.20640 1.21583 1.04124 0.91954 0.98574 1.21525 1.00840 0.94650 0.97957 1.22180 0.99210 0.87039 0.94516 1.45618 1.08036 1.24495 1.42135 1.22820 0.81306 0.99386 0.95807 1.21201 1.02713 0.97575 1.04402 1.21870 0.93118 0.95557 0.91164 1.22129 0.96468 1.03521 1.08982 1.17634 0.87990 0.83116 0.81742 1.90919 1.15255 1.77534 1.66512 1.21657 0.94629 0.84604 0.98405 0.93950 0.88952 0.99326 0.75257 0.74372 0.83949 0.86364 0.94788 0.90830 0.83878 0.89257 0.77838 0.80232 0.81876 0.84293 0.97166 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.64 10.09 21.65 0.22 -54.42 16 2 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 3 Si 0.99 44.58 29.55 68.60 2.03 46.61 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.24 -13.61 10.27 84.03 0.86 -12.75 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -32.03 3.39 -691.97 -2.35 -34.38 16 10 C 0.13 6.38 5.62 86.86 0.49 6.87 16 11 C 0.09 3.33 4.05 32.08 0.13 3.46 16 12 H 0.09 2.83 8.01 -2.39 -0.02 2.81 16 13 O -0.57 -19.00 13.48 -148.98 -2.01 -21.01 16 14 C 0.15 5.79 2.99 46.27 0.14 5.93 16 15 H 0.07 2.99 7.70 -2.39 -0.02 2.97 16 16 N -0.70 -19.29 5.13 -436.51 -2.24 -21.53 16 17 C 0.51 14.18 7.83 87.66 0.69 14.86 16 18 O -0.59 -23.12 15.71 -3.04 -0.05 -23.16 16 19 C -0.12 -1.90 5.70 29.85 0.17 -1.73 16 20 C -0.11 -2.08 4.83 30.60 0.15 -1.93 16 21 C 0.09 1.18 5.34 86.38 0.46 1.64 16 22 N -0.49 -8.06 2.58 -650.99 -1.68 -9.74 16 23 C 0.13 1.09 10.28 83.42 0.86 1.95 16 24 C -0.24 -1.66 10.01 22.08 0.22 -1.44 16 25 C 0.00 0.05 10.10 22.32 0.23 0.28 16 26 C -0.29 -5.58 9.99 22.40 0.22 -5.36 16 27 C 0.49 12.23 7.41 84.82 0.63 12.86 16 28 O -0.61 -21.22 16.64 -5.52 -0.09 -21.31 16 29 C 0.13 5.83 6.98 86.73 0.61 6.43 16 30 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.09 4.86 5.87 -2.39 -0.01 4.85 16 32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.40 9.94 9.11 -74.06 -0.67 9.27 16 34 H 0.42 8.17 8.53 -92.71 -0.79 7.38 16 35 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 38 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 39 H 0.14 0.43 8.01 -2.39 -0.02 0.41 16 40 H 0.09 1.45 7.38 -2.39 -0.02 1.43 16 41 H 0.20 -0.13 8.04 -2.91 -0.02 -0.15 16 42 H 0.18 0.03 8.06 -2.91 -0.02 0.00 16 43 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 44 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.05 1.82 8.03 -2.39 -0.02 1.81 16 Total: -1.00 -89.66 384.53 -0.32 -89.97 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.46 Total: 20.93 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 6.31 Total: 28.05 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -6.05 Total: -120.07 kcal Atomic # 8 Polarization: -63.34 SS G_CDS: -2.15 Total: -65.49 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -89.66 -0.32 -89.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195262791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.794 kcal (2) G-P(sol) polarization free energy of solvation -89.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds