Wall clock time and date at job start Tue Mar 31 2020 18:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00172 * 2 1 4 4 H 1.48504 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47288 * 300.00241 * 3 2 1 6 6 H 1.48496 * 109.47178 * 60.00252 * 3 2 1 7 7 C 1.38820 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99710 * 194.64586 * 7 2 1 9 9 N 1.36934 * 120.00260 * 14.64961 * 7 2 1 10 10 C 1.43463 * 118.94014 * 204.95908 * 9 7 2 11 11 C 1.53796 * 107.96060 * 273.62455 * 10 9 7 12 12 C 1.47146 * 111.84143 * 281.67526 * 11 10 9 13 13 N 1.48210 * 110.34507 * 58.29316 * 12 11 10 14 14 C 1.34781 * 119.96942 * 102.46224 * 13 12 11 15 15 O 1.21280 * 119.99725 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99801 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46851 * 180.02562 * 16 14 13 18 18 N 1.46498 * 109.46944 * 180.02562 * 17 16 14 19 19 C 1.34772 * 120.00190 * 180.02562 * 18 17 16 20 20 O 1.21704 * 119.99818 * 359.97438 * 19 18 17 21 21 C 1.46661 * 120.00379 * 180.02562 * 19 18 17 22 22 C 1.36544 * 125.98711 * 179.97438 * 21 19 18 23 23 C 1.40365 * 106.70661 * 180.02562 * 22 21 19 24 24 C 1.35135 * 107.11579 * 359.97438 * 23 22 21 25 25 O 1.33927 * 108.76466 * 359.97438 * 24 23 22 26 26 C 1.43611 * 120.05743 * 282.74377 * 13 12 11 27 27 C 1.48864 * 118.94128 * 24.93009 * 9 7 2 28 28 H 0.96999 * 119.99927 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.76507 * 154.01103 * 10 9 7 30 30 H 1.08998 * 109.80574 * 33.26460 * 10 9 7 31 31 H 1.08997 * 109.01125 * 161.06202 * 11 10 9 32 32 H 1.09001 * 108.94666 * 42.23817 * 11 10 9 33 33 H 1.08996 * 109.32364 * 298.02577 * 12 11 10 34 34 H 1.08996 * 109.18084 * 178.47413 * 12 11 10 35 35 H 1.09002 * 109.47189 * 60.00760 * 16 14 13 36 36 H 1.09001 * 109.47280 * 300.00390 * 16 14 13 37 37 H 1.09002 * 109.46874 * 60.00236 * 17 16 14 38 38 H 1.09001 * 109.47227 * 300.00092 * 17 16 14 39 39 H 0.96997 * 120.00165 * 0.02562 * 18 17 16 40 40 H 1.07996 * 126.64571 * 0.05309 * 22 21 19 41 41 H 1.08001 * 126.44636 * 180.02562 * 23 22 21 42 42 H 1.07999 * 125.61631 * 180.02562 * 24 23 22 43 43 H 1.09004 * 108.87579 * 211.19275 * 26 13 12 44 44 H 1.08999 * 108.87958 * 329.63120 * 26 13 12 45 45 H 1.09001 * 109.48550 * 260.60890 * 27 9 7 46 46 H 1.08998 * 109.47674 * 20.64111 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0639 -1.2174 0.2370 9 7 1.3589 -2.3690 -0.2989 10 6 1.8823 -3.6056 0.2062 11 6 2.9391 -4.1146 -0.7885 12 6 2.3232 -4.7470 -1.9658 13 7 1.4276 -3.7887 -2.6559 14 6 1.8370 -3.1785 -3.7858 15 8 2.9377 -3.4140 -4.2375 16 6 0.9267 -2.2045 -4.4884 17 6 1.6274 -1.6594 -5.7345 18 7 0.7427 -0.7121 -6.4172 19 6 1.1517 -0.1026 -7.5475 20 8 2.2562 -0.3388 -8.0008 21 6 0.2663 0.8462 -8.2307 22 6 0.5544 1.5300 -9.3769 23 6 -0.5693 2.3185 -9.6697 24 6 -1.4828 2.0840 -8.7018 25 8 -0.9760 1.1957 -7.8372 26 6 0.1263 -3.5054 -2.1185 27 6 0.1301 -2.3133 -1.1373 28 1 -0.4850 0.8400 0.0004 29 1 1.0788 -4.3365 0.2963 30 1 2.3422 -3.4414 1.1806 31 1 3.5768 -4.8428 -0.2873 32 1 3.5506 -3.2739 -1.1164 33 1 1.7462 -5.6154 -1.6482 34 1 3.1074 -5.0664 -2.6521 35 1 0.6877 -1.3806 -3.8159 36 1 0.0079 -2.7124 -4.7815 37 1 1.8661 -2.4836 -6.4068 38 1 2.5464 -1.1516 -5.4418 39 1 -0.1374 -0.5236 -6.0558 40 1 1.4694 1.4744 -9.9479 41 1 -0.6830 2.9863 -10.5108 42 1 -2.4608 2.5376 -8.6369 43 1 -0.5526 -3.2774 -2.9403 44 1 -0.2397 -4.3893 -1.5962 45 1 -0.7501 -2.3652 -0.4964 46 1 0.1159 -1.3798 -1.6998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198058399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:47 Heat of formation + Delta-G solvation = -22.373068 kcal Electronic energy + Delta-G solvation = -29473.942028 eV Core-core repulsion = 25366.518125 eV Total energy + Delta-G solvation = -4107.423903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.88917 -39.97633 -39.33947 -37.11237 -35.28142 -34.27213 -33.32233 -32.92389 -31.26629 -30.82394 -29.65020 -27.64373 -25.75369 -24.57062 -23.71183 -22.77665 -21.97468 -21.42623 -20.53548 -19.79603 -18.95529 -18.17196 -17.21803 -16.59037 -16.49548 -16.44056 -15.93622 -15.66994 -15.52606 -14.90770 -14.47736 -14.24006 -13.86162 -13.84757 -13.53576 -13.23885 -13.22691 -13.08659 -12.98745 -12.87069 -12.41947 -12.25662 -11.95565 -11.61143 -11.46169 -11.30820 -11.03041 -10.80805 -10.55602 -10.44709 -10.31256 -10.26805 -10.20575 -9.89517 -9.73161 -9.38626 -9.26440 -8.87185 -8.52879 -8.09449 -6.75256 -5.84928 -3.26079 0.86706 2.11868 2.45821 2.96012 3.06537 3.08264 3.33312 3.42407 3.45776 3.59113 4.45222 4.46720 4.65130 4.74211 4.91101 4.97129 5.13186 5.26344 5.33897 5.38249 5.48312 5.51603 5.61179 5.63925 5.65389 5.77039 5.90408 5.99244 6.03437 6.06142 6.07080 6.10819 6.25083 6.27547 6.42078 6.50851 6.58803 6.79463 6.87323 7.02257 7.31105 7.34219 7.42155 7.76600 7.91917 7.97105 8.38577 8.60244 9.15821 9.83263 10.28010 11.23076 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.003390 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.965136 B = 8257.138981 C = 9714.482595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.004 3.996 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.162 3.838 11 C -0.170 4.170 12 C 0.130 3.870 13 N -0.583 5.583 14 C 0.527 3.473 15 O -0.555 6.555 16 C -0.155 4.155 17 C 0.136 3.864 18 N -0.717 5.717 19 C 0.601 3.399 20 O -0.518 6.518 21 C -0.075 4.075 22 C -0.123 4.123 23 C -0.227 4.227 24 C -0.007 4.007 25 O -0.163 6.163 26 C 0.078 3.922 27 C 0.163 3.837 28 H 0.252 0.748 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.406 0.594 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.210 0.790 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 -2.059 -13.667 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.194 4.194 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.034 3.966 11 C -0.212 4.212 12 C 0.008 3.992 13 N -0.314 5.314 14 C 0.315 3.685 15 O -0.434 6.434 16 C -0.195 4.195 17 C 0.013 3.987 18 N -0.368 5.368 19 C 0.387 3.613 20 O -0.396 6.396 21 C -0.127 4.127 22 C -0.144 4.144 23 C -0.246 4.246 24 C -0.077 4.077 25 O -0.058 6.058 26 C -0.047 4.047 27 C 0.037 3.963 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.241 0.759 40 H 0.178 0.822 41 H 0.174 0.826 42 H 0.227 0.773 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.656 -2.401 -13.905 15.202 hybrid contribution -0.169 1.351 0.177 1.373 sum -5.825 -1.050 -13.728 14.949 Atomic orbital electron populations 1.70017 1.05038 1.25241 1.55193 1.24934 0.95309 0.98107 1.01042 0.86298 0.79571 0.84167 0.77278 1.20303 1.21597 1.21722 1.19236 0.92174 0.84818 1.41669 0.91731 1.43659 1.29018 1.02024 1.56584 1.20287 0.93682 0.88345 0.94302 1.21880 1.00821 1.00770 0.97693 1.20548 0.93618 0.90386 0.94603 1.47353 1.17126 1.42986 1.23919 1.20058 0.87115 0.80615 0.80748 1.90664 1.21808 1.64089 1.66798 1.21851 0.99514 1.00455 0.97665 1.21134 0.92897 0.92177 0.92484 1.45903 1.20444 1.44690 1.25733 1.16510 0.85027 0.79344 0.80429 1.90908 1.19483 1.63259 1.65936 1.22150 0.85642 1.05294 0.99652 1.21986 1.00409 0.96218 0.95744 1.21870 0.94504 1.05355 1.02862 1.24432 1.00216 0.93174 0.89880 1.84078 1.26804 1.48629 1.46279 1.22136 0.83174 1.01073 0.98360 1.21849 0.88957 0.94639 0.90811 0.93764 0.94845 0.93617 0.92627 0.91291 0.92107 0.90432 0.87239 0.88623 0.90322 0.90026 0.75901 0.82215 0.82607 0.77309 0.91615 0.92000 0.93958 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.63 10.90 55.49 0.60 -24.03 16 2 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 3 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.55 9.27 -15.06 -0.14 -6.69 16 8 H 0.06 1.74 7.87 -52.49 -0.41 1.33 16 9 N -0.59 -13.60 2.54 -172.29 -0.44 -14.04 16 10 C 0.16 3.17 5.63 -5.23 -0.03 3.14 16 11 C -0.17 -3.00 5.64 -29.13 -0.16 -3.17 16 12 C 0.13 2.10 5.70 -5.91 -0.03 2.06 16 13 N -0.58 -9.89 2.47 -176.98 -0.44 -10.32 16 14 C 0.53 9.37 7.67 -10.98 -0.08 9.29 16 15 O -0.55 -11.51 15.42 5.56 0.09 -11.43 16 16 C -0.15 -2.21 4.36 -27.88 -0.12 -2.33 16 17 C 0.14 2.03 4.96 -4.04 -0.02 2.01 16 18 N -0.72 -9.41 5.55 -61.62 -0.34 -9.75 16 19 C 0.60 8.84 7.79 -12.86 -0.10 8.74 16 20 O -0.52 -9.28 16.87 5.18 0.09 -9.20 16 21 C -0.08 -0.94 7.13 -36.79 -0.26 -1.21 16 22 C -0.12 -1.36 10.62 -39.39 -0.42 -1.78 16 23 C -0.23 -1.91 10.87 -39.89 -0.43 -2.34 16 24 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 25 O -0.16 -1.76 10.40 5.01 0.05 -1.70 16 26 C 0.08 1.24 5.01 -4.84 -0.02 1.22 16 27 C 0.16 3.40 5.17 -2.00 -0.01 3.39 16 28 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.03 0.59 7.58 -51.93 -0.39 0.20 16 30 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.46 7.91 -51.93 -0.41 1.05 16 33 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.08 1.29 7.12 -51.93 -0.37 0.92 16 35 H 0.11 1.68 7.31 -51.93 -0.38 1.30 16 36 H 0.10 1.07 7.38 -51.93 -0.38 0.69 16 37 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 39 H 0.41 4.39 8.23 -40.82 -0.34 4.06 16 40 H 0.16 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.07 0.87 6.38 -51.93 -0.33 0.54 16 44 H 0.06 0.90 7.73 -51.93 -0.40 0.50 16 45 H 0.04 0.95 8.00 -51.93 -0.42 0.54 16 46 H 0.08 1.77 5.72 -51.93 -0.30 1.47 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -33.13 376.02 -7.95 -41.09 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.63 Total: 4.56 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: -1.57 Total: 12.65 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.61 Total: -58.14 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.23 Total: -22.33 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.13 -7.95 -41.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198058399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.713 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds