Wall clock time and date at job start Tue Mar 31 2020 18:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00172 * 2 1 4 4 H 1.48504 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47288 * 300.00241 * 3 2 1 6 6 H 1.48496 * 109.47178 * 60.00252 * 3 2 1 7 7 C 1.38820 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99710 * 194.64586 * 7 2 1 9 9 N 1.36934 * 120.00260 * 14.64961 * 7 2 1 10 10 C 1.43463 * 118.94014 * 204.95908 * 9 7 2 11 11 C 1.53796 * 107.96060 * 273.62455 * 10 9 7 12 12 C 1.47146 * 111.84143 * 281.67526 * 11 10 9 13 13 N 1.48210 * 110.34507 * 58.29316 * 12 11 10 14 14 C 1.34781 * 119.96942 * 102.46224 * 13 12 11 15 15 O 1.21280 * 119.99725 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99801 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46851 * 180.02562 * 16 14 13 18 18 N 1.46498 * 109.46944 * 180.02562 * 17 16 14 19 19 C 1.34772 * 120.00190 * 180.02562 * 18 17 16 20 20 O 1.21704 * 119.99818 * 359.97438 * 19 18 17 21 21 C 1.46661 * 120.00379 * 180.02562 * 19 18 17 22 22 C 1.36544 * 125.98711 * 179.97438 * 21 19 18 23 23 C 1.40365 * 106.70661 * 180.02562 * 22 21 19 24 24 C 1.35135 * 107.11579 * 359.97438 * 23 22 21 25 25 O 1.33927 * 108.76466 * 359.97438 * 24 23 22 26 26 C 1.43611 * 120.05743 * 282.74377 * 13 12 11 27 27 C 1.48864 * 118.94128 * 24.93009 * 9 7 2 28 28 H 0.96999 * 119.99927 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.76507 * 154.01103 * 10 9 7 30 30 H 1.08998 * 109.80574 * 33.26460 * 10 9 7 31 31 H 1.08997 * 109.01125 * 161.06202 * 11 10 9 32 32 H 1.09001 * 108.94666 * 42.23817 * 11 10 9 33 33 H 1.08996 * 109.32364 * 298.02577 * 12 11 10 34 34 H 1.08996 * 109.18084 * 178.47413 * 12 11 10 35 35 H 1.09002 * 109.47189 * 60.00760 * 16 14 13 36 36 H 1.09001 * 109.47280 * 300.00390 * 16 14 13 37 37 H 1.09002 * 109.46874 * 60.00236 * 17 16 14 38 38 H 1.09001 * 109.47227 * 300.00092 * 17 16 14 39 39 H 0.96997 * 120.00165 * 0.02562 * 18 17 16 40 40 H 1.07996 * 126.64571 * 0.05309 * 22 21 19 41 41 H 1.08001 * 126.44636 * 180.02562 * 23 22 21 42 42 H 1.07999 * 125.61631 * 180.02562 * 24 23 22 43 43 H 1.09004 * 108.87579 * 211.19275 * 26 13 12 44 44 H 1.08999 * 108.87958 * 329.63120 * 26 13 12 45 45 H 1.09001 * 109.48550 * 260.60890 * 27 9 7 46 46 H 1.08998 * 109.47674 * 20.64111 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0639 -1.2174 0.2370 9 7 1.3589 -2.3690 -0.2989 10 6 1.8823 -3.6056 0.2062 11 6 2.9391 -4.1146 -0.7885 12 6 2.3232 -4.7470 -1.9658 13 7 1.4276 -3.7887 -2.6559 14 6 1.8370 -3.1785 -3.7858 15 8 2.9377 -3.4140 -4.2375 16 6 0.9267 -2.2045 -4.4884 17 6 1.6274 -1.6594 -5.7345 18 7 0.7427 -0.7121 -6.4172 19 6 1.1517 -0.1026 -7.5475 20 8 2.2562 -0.3388 -8.0008 21 6 0.2663 0.8462 -8.2307 22 6 0.5544 1.5300 -9.3769 23 6 -0.5693 2.3185 -9.6697 24 6 -1.4828 2.0840 -8.7018 25 8 -0.9760 1.1957 -7.8372 26 6 0.1263 -3.5054 -2.1185 27 6 0.1301 -2.3133 -1.1373 28 1 -0.4850 0.8400 0.0004 29 1 1.0788 -4.3365 0.2963 30 1 2.3422 -3.4414 1.1806 31 1 3.5768 -4.8428 -0.2873 32 1 3.5506 -3.2739 -1.1164 33 1 1.7462 -5.6154 -1.6482 34 1 3.1074 -5.0664 -2.6521 35 1 0.6877 -1.3806 -3.8159 36 1 0.0079 -2.7124 -4.7815 37 1 1.8661 -2.4836 -6.4068 38 1 2.5464 -1.1516 -5.4418 39 1 -0.1374 -0.5236 -6.0558 40 1 1.4694 1.4744 -9.9479 41 1 -0.6830 2.9863 -10.5108 42 1 -2.4608 2.5376 -8.6369 43 1 -0.5526 -3.2774 -2.9403 44 1 -0.2397 -4.3893 -1.5962 45 1 -0.7501 -2.3652 -0.4964 46 1 0.1159 -1.3798 -1.6998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198058399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:46 Heat of formation + Delta-G solvation = -44.988008 kcal Electronic energy + Delta-G solvation = -29474.922686 eV Core-core repulsion = 25366.518125 eV Total energy + Delta-G solvation = -4108.404560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.65922 -41.33262 -40.53917 -38.66377 -36.51142 -35.92082 -34.45700 -34.05882 -32.85338 -32.19910 -30.57856 -29.23784 -27.28759 -25.83525 -25.39676 -23.87793 -22.85830 -22.62273 -21.54102 -21.44112 -20.03802 -19.39130 -18.79122 -18.02273 -17.55038 -17.45597 -17.25670 -16.88845 -16.72919 -16.52269 -15.93244 -15.58470 -15.43356 -15.23201 -14.91923 -14.52577 -14.46873 -14.13668 -13.95741 -13.87534 -13.81611 -13.56303 -13.42497 -13.13261 -12.95864 -12.80531 -12.61328 -12.48363 -12.32936 -12.07591 -11.68694 -11.67924 -11.62369 -11.41385 -11.06905 -10.82945 -10.48262 -10.42448 -9.67479 -9.52467 -8.62911 -7.85807 -5.27194 -0.01358 1.38254 1.41028 1.43762 1.50905 1.53916 1.65612 1.99603 2.03114 2.37176 2.49808 3.27364 3.52429 3.69984 3.75209 3.79011 3.94182 3.98576 4.10657 4.13578 4.25661 4.35064 4.43841 4.54100 4.59318 4.63311 4.73716 4.79791 4.81026 4.87760 4.90056 4.93931 4.96804 5.07491 5.13115 5.26747 5.32930 5.38450 5.50800 5.62806 5.75962 5.80476 5.83785 6.32547 6.40989 6.55343 6.89525 7.19595 7.23349 7.98006 8.33948 9.18244 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.003390 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.965136 B = 8257.138981 C = 9714.482595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.035 4.035 3 Si 0.942 3.058 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.047 0.953 9 N -0.606 5.606 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.126 3.874 13 N -0.584 5.584 14 C 0.517 3.483 15 O -0.591 6.591 16 C -0.141 4.141 17 C 0.146 3.854 18 N -0.706 5.706 19 C 0.598 3.402 20 O -0.563 6.563 21 C -0.111 4.111 22 C -0.124 4.124 23 C -0.234 4.234 24 C 0.013 3.987 25 O -0.171 6.171 26 C 0.088 3.912 27 C 0.168 3.832 28 H 0.250 0.750 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.137 0.863 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.419 0.581 40 H 0.158 0.842 41 H 0.186 0.814 42 H 0.257 0.743 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.025 0.975 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 -2.528 -14.519 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.230 4.230 3 Si 0.772 3.228 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.065 0.935 9 N -0.329 5.329 10 C 0.031 3.969 11 C -0.196 4.196 12 C 0.005 3.995 13 N -0.314 5.314 14 C 0.306 3.694 15 O -0.473 6.473 16 C -0.181 4.181 17 C 0.022 3.978 18 N -0.357 5.357 19 C 0.386 3.614 20 O -0.444 6.444 21 C -0.163 4.163 22 C -0.145 4.145 23 C -0.253 4.253 24 C -0.057 4.057 25 O -0.066 6.066 26 C -0.037 4.037 27 C 0.043 3.957 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.155 0.845 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.256 0.744 40 H 0.176 0.824 41 H 0.203 0.797 42 H 0.272 0.728 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.043 0.957 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.157 -2.892 -14.728 17.083 hybrid contribution 0.578 1.533 0.450 1.699 sum -7.579 -1.358 -14.278 16.222 Atomic orbital electron populations 1.70109 1.05506 1.25324 1.56159 1.25363 0.95974 0.99895 1.01813 0.85593 0.78379 0.81847 0.76959 1.20823 1.21765 1.21616 1.19316 0.91723 0.86535 1.41009 0.93469 1.43904 1.29415 1.02118 1.57421 1.20431 0.94731 0.87666 0.94042 1.21691 1.00035 0.99850 0.98062 1.20667 0.94097 0.91190 0.93545 1.47495 1.17618 1.42707 1.23536 1.20642 0.87024 0.80676 0.81058 1.90648 1.23469 1.65317 1.67879 1.21768 1.00215 0.99578 0.96553 1.20860 0.92208 0.91884 0.92827 1.45749 1.20632 1.44047 1.25252 1.16838 0.84870 0.79332 0.80363 1.90869 1.21453 1.64947 1.67178 1.21706 0.86810 1.06941 1.00800 1.22274 1.01266 0.95917 0.95049 1.22235 0.93403 1.05509 1.04126 1.25441 1.01259 0.90807 0.88155 1.84065 1.25975 1.49466 1.47113 1.22025 0.83275 0.99866 0.98566 1.21710 0.87283 0.95796 0.90896 0.94070 0.92114 0.94900 0.89800 0.95747 0.88245 0.91111 0.88111 0.84491 0.90922 0.93404 0.74380 0.82416 0.79701 0.72770 0.88195 0.89250 0.95732 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.47 10.90 21.65 0.24 -50.23 16 2 C -0.03 -1.86 4.94 84.86 0.42 -1.44 16 3 Si 0.94 45.04 29.58 68.60 2.03 47.07 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.25 -13.65 9.27 84.04 0.78 -12.87 16 8 H 0.05 2.64 7.87 -2.91 -0.02 2.61 16 9 N -0.61 -27.79 2.54 -699.00 -1.77 -29.56 16 10 C 0.16 5.99 5.63 87.21 0.49 6.48 16 11 C -0.16 -5.30 5.64 29.04 0.16 -5.13 16 12 C 0.13 3.78 5.70 84.23 0.48 4.26 16 13 N -0.58 -18.65 2.47 -832.22 -2.05 -20.71 16 14 C 0.52 18.08 7.67 87.66 0.67 18.75 16 15 O -0.59 -24.98 15.42 -3.03 -0.05 -25.03 16 16 C -0.14 -3.91 4.36 29.85 0.13 -3.78 16 17 C 0.15 4.47 4.96 86.38 0.43 4.90 16 18 N -0.71 -18.74 5.55 -467.09 -2.59 -21.33 16 19 C 0.60 18.19 7.79 86.44 0.67 18.86 16 20 O -0.56 -21.35 16.87 -4.36 -0.07 -21.43 16 21 C -0.11 -2.76 7.13 24.07 0.17 -2.59 16 22 C -0.12 -2.67 10.62 22.39 0.24 -2.43 16 23 C -0.23 -3.30 10.87 22.07 0.24 -3.06 16 24 C 0.01 0.16 12.08 67.10 0.81 0.97 16 25 O -0.17 -3.38 10.40 -4.98 -0.05 -3.43 16 26 C 0.09 2.52 5.01 87.39 0.44 2.96 16 27 C 0.17 6.86 5.17 86.40 0.45 7.30 16 28 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 29 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16 30 H 0.03 1.31 8.02 -2.39 -0.02 1.29 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.02 1.03 7.91 -2.39 -0.02 1.01 16 33 H 0.10 2.27 8.06 -2.39 -0.02 2.25 16 34 H 0.07 2.26 7.12 -2.39 -0.02 2.24 16 35 H 0.10 3.05 7.31 -2.39 -0.02 3.04 16 36 H 0.14 2.63 7.38 -2.39 -0.02 2.61 16 37 H 0.07 2.31 8.10 -2.39 -0.02 2.29 16 38 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 39 H 0.42 8.77 8.23 -92.71 -0.76 8.00 16 40 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 41 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.26 0.50 8.06 -2.91 -0.02 0.48 16 43 H 0.10 2.23 6.38 -2.39 -0.02 2.22 16 44 H 0.09 2.16 7.73 -2.39 -0.02 2.15 16 45 H 0.02 1.09 8.00 -2.39 -0.02 1.07 16 46 H 0.05 2.22 5.72 -2.39 -0.01 2.21 16 Total: -1.00 -76.24 376.02 2.50 -73.74 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.24 Total: 17.72 kcal Atomic # 6 Polarization: 26.60 SS G_CDS: 6.58 Total: 33.18 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -6.18 Total: -121.83 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.17 Total: -49.88 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -76.24 2.50 -73.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198058399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.752 kcal (2) G-P(sol) polarization free energy of solvation -76.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds