Wall clock time and date at job start Tue Mar 31 2020 18:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47245 * 239.99641 * 3 2 1 5 5 H 1.48493 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46966 * 119.99910 * 3 2 1 7 7 C 1.38806 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00196 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64960 * 359.97438 * 9 7 2 11 11 C 1.54316 * 107.27467 * 178.99624 * 10 9 7 12 12 H 1.09000 * 110.72354 * 96.16831 * 11 10 9 13 13 O 1.42905 * 110.87138 * 219.37632 * 11 10 9 14 14 C 1.55162 * 102.93994 * 337.80194 * 11 10 9 15 15 H 1.08996 * 111.00398 * 277.38930 * 14 11 10 16 16 N 1.46499 * 111.00051 * 153.57730 * 14 11 10 17 17 C 1.34777 * 119.99776 * 158.18534 * 16 14 11 18 18 O 1.21281 * 120.00115 * 359.97438 * 17 16 14 19 19 C 1.50702 * 120.00138 * 180.02562 * 17 16 14 20 20 C 1.52998 * 109.47505 * 179.97438 * 19 17 16 21 21 C 1.52994 * 109.47556 * 179.97438 * 20 19 17 22 22 O 1.42894 * 109.47573 * 179.97438 * 21 20 19 23 23 C 1.35910 * 117.00621 * 180.02562 * 22 21 20 24 24 C 1.39138 * 120.47706 * 180.24394 * 23 22 21 25 25 C 1.38535 * 118.37336 * 180.24194 * 24 23 22 26 26 C 1.38262 * 119.22035 * 359.47237 * 25 24 23 27 27 N 1.31844 * 120.88422 * 0.30388 * 26 25 24 28 28 C 1.31834 * 121.78446 * 359.97438 * 27 26 25 29 29 C 1.47469 * 125.62970 * 179.97438 * 9 7 2 30 30 H 0.97005 * 119.99877 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.88350 * 59.57188 * 10 9 7 32 32 H 1.09000 * 110.00793 * 298.48512 * 10 9 7 33 33 H 0.96698 * 113.99498 * 293.60178 * 13 11 10 34 34 H 0.97001 * 120.00841 * 338.18483 * 16 14 11 35 35 H 1.09002 * 109.47071 * 59.99454 * 19 17 16 36 36 H 1.09001 * 109.46690 * 299.99605 * 19 17 16 37 37 H 1.08999 * 109.47453 * 59.98925 * 20 19 17 38 38 H 1.09006 * 109.46828 * 300.00037 * 20 19 17 39 39 H 1.09002 * 109.46851 * 59.99617 * 21 20 19 40 40 H 1.08998 * 109.47422 * 300.00280 * 21 20 19 41 41 H 1.07999 * 120.81005 * 0.02562 * 24 23 22 42 42 H 1.08002 * 120.39207 * 179.75678 * 25 24 23 43 43 H 1.08000 * 119.55595 * 180.28266 * 26 25 24 44 44 H 1.07997 * 119.66066 * 179.97438 * 28 27 26 45 45 H 1.09007 * 110.34716 * 85.23571 * 29 9 7 46 46 H 1.08998 * 110.40517 * 322.89861 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0253 12 1 -0.6316 -4.4174 0.9823 13 8 -1.5634 -4.3200 -0.8754 14 6 0.8521 -4.6564 -0.6096 15 1 0.8567 -4.5979 -1.6980 16 7 1.0292 -6.0395 -0.1602 17 6 1.8118 -6.8816 -0.8636 18 8 2.3690 -6.4946 -1.8690 19 6 1.9936 -8.3045 -0.4017 20 6 2.9213 -9.0407 -1.3703 21 6 3.1064 -10.4851 -0.9010 22 8 3.9723 -11.1728 -1.8060 23 6 4.2418 -12.4764 -1.5320 24 6 5.0802 -13.2135 -2.3625 25 6 5.3210 -14.5402 -2.0449 26 6 4.7340 -15.0813 -0.9161 27 7 3.9479 -14.3538 -0.1473 28 6 3.6890 -13.0897 -0.4174 29 6 1.9342 -3.7313 0.0005 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5575 -2.0527 -0.8833 32 1 -0.5567 -2.0834 0.9008 33 1 -2.4011 -3.9587 -0.5549 34 1 0.5833 -6.3492 0.6437 35 1 1.0254 -8.8045 -0.3755 36 1 2.4321 -8.3092 0.5962 37 1 3.8895 -8.5407 -1.3970 38 1 2.4824 -9.0359 -2.3681 39 1 2.1383 -10.9852 -0.8741 40 1 3.5454 -10.4895 0.0966 41 1 5.5293 -12.7632 -3.2354 42 1 5.9633 -15.1436 -2.6692 43 1 4.9217 -16.1138 -0.6609 44 1 3.0396 -12.5258 0.2359 45 1 2.1679 -4.0415 1.0191 46 1 2.8332 -3.7412 -0.6157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198869857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:58 Heat of formation + Delta-G solvation = -61.952158 kcal Electronic energy + Delta-G solvation = -27515.270333 eV Core-core repulsion = 23406.130152 eV Total energy + Delta-G solvation = -4109.140181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99573 -39.81296 -38.62590 -37.89344 -35.11493 -34.23501 -34.03213 -32.68742 -31.72854 -30.65157 -28.75530 -27.75221 -26.71529 -24.60469 -24.11760 -23.41228 -22.03405 -20.69557 -20.40753 -20.06427 -18.69367 -17.51030 -17.10501 -17.03251 -16.87710 -16.83672 -16.39319 -15.73771 -15.45037 -14.90823 -14.67400 -14.33542 -14.23803 -14.05531 -13.74789 -13.44151 -13.33855 -13.11817 -12.75452 -12.68752 -12.49005 -12.34636 -12.08688 -11.92094 -11.65344 -11.49459 -11.27429 -11.03805 -10.92003 -10.81082 -10.21317 -10.14936 -9.93723 -9.87505 -9.86137 -9.82872 -9.34321 -8.87820 -8.86368 -8.64872 -6.93746 -5.78087 -3.12768 0.67621 0.86362 2.56978 2.74895 3.32229 3.37536 3.39208 3.43089 3.44551 4.05613 4.22148 4.38448 4.42617 4.51379 4.51579 4.59224 4.60774 4.67767 4.84895 4.98865 4.99966 5.07676 5.12024 5.18210 5.31643 5.41843 5.53281 5.54767 5.64118 5.66078 5.75592 5.79475 5.94872 6.05250 6.09781 6.11021 6.49046 6.59136 6.82919 6.85419 7.29618 7.44059 7.51967 7.63968 7.71836 8.07972 8.15402 8.36761 9.13170 9.73233 10.36081 11.33591 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026756 B = 0.001665 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.255443 B =16814.219297 C =17452.510335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.916 3.084 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.057 0.943 13 O -0.564 6.564 14 C 0.138 3.862 15 H 0.103 0.897 16 N -0.716 5.716 17 C 0.512 3.488 18 O -0.537 6.537 19 C -0.137 4.137 20 C -0.104 4.104 21 C 0.056 3.944 22 O -0.306 6.306 23 C 0.085 3.915 24 C -0.111 4.111 25 C -0.132 4.132 26 C 0.055 3.945 27 N -0.451 5.451 28 C 0.015 3.985 29 C 0.130 3.870 30 H 0.254 0.746 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.377 0.623 34 H 0.397 0.603 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.023 0.977 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -27.401 0.838 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.121 0.879 16 N -0.366 5.366 17 C 0.298 3.702 18 O -0.413 6.413 19 C -0.177 4.177 20 C -0.142 4.142 21 C -0.019 4.019 22 O -0.218 6.218 23 C 0.037 3.963 24 C -0.138 4.138 25 C -0.151 4.151 26 C -0.103 4.103 27 N -0.160 5.160 28 C -0.143 4.143 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.223 0.777 34 H 0.231 0.769 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.175 0.825 44 H 0.176 0.824 45 H 0.041 0.959 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.170 -27.401 0.325 27.719 hybrid contribution -0.008 1.425 0.268 1.451 sum 4.163 -25.976 0.593 26.314 Atomic orbital electron populations 1.69912 1.04934 1.25345 1.56974 1.24816 0.95787 0.97792 1.01932 0.86139 0.78441 0.82841 0.77988 1.21025 1.21530 1.21109 1.19046 0.90540 0.82090 1.44129 0.90186 1.44240 1.01176 0.99889 1.87451 1.21808 0.85417 0.87783 1.02186 1.23456 0.85533 0.98584 0.91600 0.92508 1.86467 1.18736 1.79839 1.51803 1.22254 0.94453 0.79111 1.00916 0.87877 1.45935 1.49623 1.11942 1.29119 1.20425 0.78791 0.87223 0.83769 1.90741 1.47300 1.77955 1.25316 1.21515 1.01885 0.93352 1.00956 1.21227 1.01595 0.91145 1.00216 1.22955 0.93058 0.93248 0.92600 1.86105 1.64519 1.20033 1.51104 1.20108 0.96008 0.84960 0.95263 1.21011 0.98542 0.93811 1.00413 1.22047 1.00065 0.94755 0.98259 1.22679 0.95175 1.00257 0.92155 1.67524 1.12786 1.05874 1.29860 1.22965 1.02231 0.92489 0.96663 1.21849 0.94906 0.85729 0.97227 0.93589 0.92126 0.93308 0.77653 0.76899 0.88590 0.88510 0.89685 0.89750 0.91539 0.91490 0.83883 0.84031 0.82524 0.82429 0.95923 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 10.31 55.49 0.57 -26.07 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -15.25 3.40 -170.05 -0.58 -15.83 16 10 C 0.15 3.60 5.15 -3.07 -0.02 3.58 16 11 C 0.07 1.23 3.96 -24.90 -0.10 1.13 16 12 H 0.06 0.88 8.00 -51.93 -0.42 0.47 16 13 O -0.56 -9.49 13.40 -35.23 -0.47 -9.96 16 14 C 0.14 2.54 3.09 -65.79 -0.20 2.33 16 15 H 0.10 2.22 7.63 -51.93 -0.40 1.82 16 16 N -0.72 -9.83 5.21 -51.74 -0.27 -10.10 16 17 C 0.51 7.06 7.83 -10.98 -0.09 6.97 16 18 O -0.54 -9.91 15.67 5.56 0.09 -9.83 16 19 C -0.14 -1.14 5.70 -27.88 -0.16 -1.29 16 20 C -0.10 -0.95 4.87 -26.74 -0.13 -1.08 16 21 C 0.06 0.41 4.75 37.15 0.18 0.59 16 22 O -0.31 -2.94 10.15 -19.46 -0.20 -3.14 16 23 C 0.08 0.76 6.71 -39.07 -0.26 0.50 16 24 C -0.11 -0.86 10.13 -39.14 -0.40 -1.25 16 25 C -0.13 -0.81 10.11 -39.46 -0.40 -1.21 16 26 C 0.06 0.40 11.18 -17.54 -0.20 0.20 16 27 N -0.45 -4.30 10.35 -13.13 -0.14 -4.44 16 28 C 0.01 0.13 10.22 -17.38 -0.18 -0.05 16 29 C 0.13 2.75 6.93 -2.51 -0.02 2.73 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.06 1.61 7.30 -51.93 -0.38 1.23 16 32 H 0.05 1.23 7.50 -51.93 -0.39 0.84 16 33 H 0.38 4.76 9.12 45.56 0.42 5.18 16 34 H 0.40 4.10 8.54 -40.82 -0.35 3.75 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.07 0.38 7.68 -51.93 -0.40 -0.02 16 40 H 0.07 0.39 7.68 -51.93 -0.40 -0.01 16 41 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.16 1.05 6.32 -52.49 -0.33 0.72 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -35.83 384.61 -8.43 -44.25 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.99 Total: 6.04 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -2.22 Total: 6.28 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.41 Total: -56.45 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.58 Total: -22.93 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.83 -8.43 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198869857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.698 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds