Wall clock time and date at job start Tue Mar 31 2020 18:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47245 * 239.99641 * 3 2 1 5 5 H 1.48493 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46966 * 119.99910 * 3 2 1 7 7 C 1.38806 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00196 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64960 * 359.97438 * 9 7 2 11 11 C 1.54316 * 107.27467 * 178.99624 * 10 9 7 12 12 H 1.09000 * 110.72354 * 96.16831 * 11 10 9 13 13 O 1.42905 * 110.87138 * 219.37632 * 11 10 9 14 14 C 1.55162 * 102.93994 * 337.80194 * 11 10 9 15 15 H 1.08996 * 111.00398 * 277.38930 * 14 11 10 16 16 N 1.46499 * 111.00051 * 153.57730 * 14 11 10 17 17 C 1.34777 * 119.99776 * 158.18534 * 16 14 11 18 18 O 1.21281 * 120.00115 * 359.97438 * 17 16 14 19 19 C 1.50702 * 120.00138 * 180.02562 * 17 16 14 20 20 C 1.52998 * 109.47505 * 179.97438 * 19 17 16 21 21 C 1.52994 * 109.47556 * 179.97438 * 20 19 17 22 22 O 1.42894 * 109.47573 * 179.97438 * 21 20 19 23 23 C 1.35910 * 117.00621 * 180.02562 * 22 21 20 24 24 C 1.39138 * 120.47706 * 180.24394 * 23 22 21 25 25 C 1.38535 * 118.37336 * 180.24194 * 24 23 22 26 26 C 1.38262 * 119.22035 * 359.47237 * 25 24 23 27 27 N 1.31844 * 120.88422 * 0.30388 * 26 25 24 28 28 C 1.31834 * 121.78446 * 359.97438 * 27 26 25 29 29 C 1.47469 * 125.62970 * 179.97438 * 9 7 2 30 30 H 0.97005 * 119.99877 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.88350 * 59.57188 * 10 9 7 32 32 H 1.09000 * 110.00793 * 298.48512 * 10 9 7 33 33 H 0.96698 * 113.99498 * 293.60178 * 13 11 10 34 34 H 0.97001 * 120.00841 * 338.18483 * 16 14 11 35 35 H 1.09002 * 109.47071 * 59.99454 * 19 17 16 36 36 H 1.09001 * 109.46690 * 299.99605 * 19 17 16 37 37 H 1.08999 * 109.47453 * 59.98925 * 20 19 17 38 38 H 1.09006 * 109.46828 * 300.00037 * 20 19 17 39 39 H 1.09002 * 109.46851 * 59.99617 * 21 20 19 40 40 H 1.08998 * 109.47422 * 300.00280 * 21 20 19 41 41 H 1.07999 * 120.81005 * 0.02562 * 24 23 22 42 42 H 1.08002 * 120.39207 * 179.75678 * 25 24 23 43 43 H 1.08000 * 119.55595 * 180.28266 * 26 25 24 44 44 H 1.07997 * 119.66066 * 179.97438 * 28 27 26 45 45 H 1.09007 * 110.34716 * 85.23571 * 29 9 7 46 46 H 1.08998 * 110.40517 * 322.89861 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0253 12 1 -0.6316 -4.4174 0.9823 13 8 -1.5634 -4.3200 -0.8754 14 6 0.8521 -4.6564 -0.6096 15 1 0.8567 -4.5979 -1.6980 16 7 1.0292 -6.0395 -0.1602 17 6 1.8118 -6.8816 -0.8636 18 8 2.3690 -6.4946 -1.8690 19 6 1.9936 -8.3045 -0.4017 20 6 2.9213 -9.0407 -1.3703 21 6 3.1064 -10.4851 -0.9010 22 8 3.9723 -11.1728 -1.8060 23 6 4.2418 -12.4764 -1.5320 24 6 5.0802 -13.2135 -2.3625 25 6 5.3210 -14.5402 -2.0449 26 6 4.7340 -15.0813 -0.9161 27 7 3.9479 -14.3538 -0.1473 28 6 3.6890 -13.0897 -0.4174 29 6 1.9342 -3.7313 0.0005 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5575 -2.0527 -0.8833 32 1 -0.5567 -2.0834 0.9008 33 1 -2.4011 -3.9587 -0.5549 34 1 0.5833 -6.3492 0.6437 35 1 1.0254 -8.8045 -0.3755 36 1 2.4321 -8.3092 0.5962 37 1 3.8895 -8.5407 -1.3970 38 1 2.4824 -9.0359 -2.3681 39 1 2.1383 -10.9852 -0.8741 40 1 3.5454 -10.4895 0.0966 41 1 5.5293 -12.7632 -3.2354 42 1 5.9633 -15.1436 -2.6692 43 1 4.9217 -16.1138 -0.6609 44 1 3.0396 -12.5258 0.2359 45 1 2.1679 -4.0415 1.0191 46 1 2.8332 -3.7412 -0.6157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198869857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:57 Heat of formation + Delta-G solvation = -90.876108 kcal Electronic energy + Delta-G solvation = -27516.524570 eV Core-core repulsion = 23406.130152 eV Total energy + Delta-G solvation = -4110.394418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.56500 -41.04268 -39.51557 -39.11613 -36.68403 -35.57262 -34.94028 -33.62267 -33.21740 -31.24492 -30.34022 -29.11616 -27.97988 -26.28597 -24.86566 -24.05315 -22.85604 -22.32577 -21.84613 -21.27148 -19.35642 -19.04681 -18.45486 -18.00258 -17.54220 -17.47871 -17.36977 -17.30983 -16.49080 -16.34982 -15.80360 -15.50767 -15.27838 -15.02302 -14.90432 -14.48703 -14.37097 -14.30735 -13.96415 -13.95451 -13.74599 -13.31905 -13.16946 -13.14083 -12.98494 -12.74822 -12.71200 -12.49479 -12.31340 -12.14141 -11.89555 -11.68313 -11.53579 -11.13894 -10.79864 -10.76857 -10.67682 -10.43699 -10.14085 -9.45030 -8.98150 -7.90087 -5.27365 0.15187 0.29733 1.44633 1.48123 1.54229 1.66946 1.88182 2.30483 2.48056 2.82950 3.12576 3.30531 3.54970 3.55203 3.62945 3.71581 3.88114 3.93204 3.93957 4.04727 4.06418 4.09699 4.17985 4.32524 4.37501 4.44757 4.47010 4.55358 4.57236 4.65682 4.70080 4.81321 5.01116 5.03571 5.06648 5.15833 5.23939 5.35520 5.42860 5.49062 5.59950 5.65346 6.12383 6.26621 6.59443 6.86743 6.97307 7.03519 7.31350 7.68153 8.30317 9.19251 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026756 B = 0.001665 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.255443 B =16814.219297 C =17452.510335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.251 4.251 8 H 0.080 0.920 9 N -0.623 5.623 10 C 0.160 3.840 11 C 0.092 3.908 12 H 0.098 0.902 13 O -0.570 6.570 14 C 0.152 3.848 15 H 0.066 0.934 16 N -0.701 5.701 17 C 0.506 3.494 18 O -0.591 6.591 19 C -0.122 4.122 20 C -0.101 4.101 21 C 0.058 3.942 22 O -0.328 6.328 23 C 0.068 3.932 24 C -0.126 4.126 25 C -0.124 4.124 26 C 0.047 3.953 27 N -0.479 5.479 28 C 0.005 3.995 29 C 0.131 3.869 30 H 0.250 0.750 31 H 0.018 0.982 32 H 0.027 0.973 33 H 0.396 0.604 34 H 0.420 0.580 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.151 0.849 42 H 0.173 0.827 43 H 0.182 0.818 44 H 0.174 0.826 45 H 0.045 0.955 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 -29.892 2.353 30.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.379 4.379 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.034 3.966 11 C 0.032 3.968 12 H 0.116 0.884 13 O -0.377 6.377 14 C 0.045 3.955 15 H 0.084 0.916 16 N -0.354 5.354 17 C 0.295 3.705 18 O -0.471 6.471 19 C -0.161 4.161 20 C -0.139 4.139 21 C -0.017 4.017 22 O -0.240 6.240 23 C 0.020 3.980 24 C -0.152 4.152 25 C -0.143 4.143 26 C -0.111 4.111 27 N -0.189 5.189 28 C -0.153 4.153 29 C 0.004 3.996 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.247 0.753 34 H 0.258 0.742 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.169 0.831 42 H 0.191 0.809 43 H 0.199 0.801 44 H 0.191 0.809 45 H 0.062 0.938 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.214 -29.942 1.880 30.295 hybrid contribution 0.011 2.140 -0.268 2.157 sum 4.225 -27.801 1.612 28.167 Atomic orbital electron populations 1.70122 1.06127 1.25619 1.57703 1.25652 0.96749 1.00969 1.02045 0.85127 0.77213 0.78618 0.78202 1.20749 1.21603 1.19959 1.19409 0.91008 0.83573 1.43958 0.90187 1.44518 1.02297 1.00829 1.87394 1.21626 0.84264 0.91593 0.99081 1.23149 0.85734 0.94340 0.93615 0.88442 1.86434 1.19475 1.79608 1.52205 1.21676 0.93775 0.81397 0.98630 0.91591 1.45711 1.49882 1.09816 1.29971 1.21481 0.77231 0.89102 0.82700 1.90731 1.49297 1.79256 1.27840 1.21531 1.03778 0.88977 1.01816 1.21138 1.00460 0.92652 0.99667 1.23005 0.94055 0.91725 0.92886 1.86065 1.65259 1.20592 1.52130 1.20288 0.96879 0.84829 0.95981 1.21342 0.98537 0.94617 1.00708 1.22382 0.99602 0.94307 0.98055 1.23193 0.94494 1.01264 0.92129 1.67548 1.13968 1.06417 1.30967 1.23198 1.02603 0.92565 0.96912 1.21948 0.94938 0.84677 0.98015 0.94121 0.96353 0.95513 0.75346 0.74242 0.85018 0.85000 0.92024 0.91987 0.89485 0.89527 0.83126 0.80927 0.80132 0.80909 0.93751 0.95160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.16 10.31 21.65 0.22 -55.93 16 2 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 3 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.25 -14.32 10.28 84.03 0.86 -13.46 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.62 -32.40 3.40 -691.92 -2.35 -34.75 16 10 C 0.16 7.67 5.15 86.73 0.45 8.12 16 11 C 0.09 3.18 3.96 31.78 0.13 3.30 16 12 H 0.10 2.66 8.00 -2.39 -0.02 2.64 16 13 O -0.57 -18.35 13.40 -148.98 -2.00 -20.34 16 14 C 0.15 5.54 3.09 46.38 0.14 5.68 16 15 H 0.07 2.93 7.63 -2.39 -0.02 2.91 16 16 N -0.70 -17.69 5.21 -435.98 -2.27 -19.96 16 17 C 0.51 13.23 7.83 87.66 0.69 13.91 16 18 O -0.59 -22.32 15.67 -3.03 -0.05 -22.36 16 19 C -0.12 -1.63 5.70 29.85 0.17 -1.46 16 20 C -0.10 -1.74 4.87 30.59 0.15 -1.59 16 21 C 0.06 0.72 4.75 71.98 0.34 1.06 16 22 O -0.33 -6.08 10.15 -92.53 -0.94 -7.02 16 23 C 0.07 1.16 6.71 22.60 0.15 1.31 16 24 C -0.13 -1.80 10.13 22.56 0.23 -1.57 16 25 C -0.12 -1.29 10.11 22.35 0.23 -1.06 16 26 C 0.05 0.59 11.18 84.70 0.95 1.54 16 27 N -0.48 -8.44 10.35 -195.44 -2.02 -10.47 16 28 C 0.00 0.07 10.22 84.81 0.87 0.94 16 29 C 0.13 5.55 6.93 86.84 0.60 6.16 16 30 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 31 H 0.02 1.02 7.30 -2.39 -0.02 1.00 16 32 H 0.03 1.38 7.50 -2.39 -0.02 1.36 16 33 H 0.40 9.31 9.12 -74.06 -0.68 8.63 16 34 H 0.42 6.91 8.54 -92.71 -0.79 6.12 16 35 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 38 H 0.06 1.33 8.10 -2.38 -0.02 1.31 16 39 H 0.09 0.73 7.68 -2.39 -0.02 0.71 16 40 H 0.09 0.74 7.68 -2.39 -0.02 0.72 16 41 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 43 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.17 1.95 6.32 -2.91 -0.02 1.93 16 45 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -83.12 384.61 -1.42 -84.54 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -0.45 Total: 18.46 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 6.41 Total: 19.88 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -6.42 Total: -121.11 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -2.98 Total: -49.73 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -83.12 -1.42 -84.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198869857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.335 kcal (2) G-P(sol) polarization free energy of solvation -83.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds