Wall clock time and date at job start Tue Mar 31 2020 18:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99974 * 2 1 4 4 H 1.48495 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47201 * 300.00317 * 3 2 1 6 6 H 1.48506 * 109.46951 * 59.99968 * 3 2 1 7 7 C 1.37873 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47273 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47308 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47386 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00000 * 180.02562 * 12 11 10 14 14 O 1.21579 * 120.00564 * 359.97438 * 13 12 11 15 15 C 1.47630 * 119.99727 * 180.02562 * 13 12 11 16 16 C 1.40056 * 120.88146 * 179.97438 * 15 13 12 17 17 N 1.32020 * 118.98627 * 179.70315 * 16 15 13 18 18 C 1.32465 * 120.91617 * 0.27864 * 17 16 15 19 19 O 1.35297 * 119.02122 * 180.02562 * 18 17 16 20 20 C 1.42897 * 116.99835 * 180.02562 * 19 18 17 21 21 C 1.53176 * 109.54133 * 269.82124 * 20 19 18 22 22 C 1.53111 * 109.15568 * 183.24533 * 21 20 19 23 23 O 1.42903 * 109.48788 * 57.47467 * 22 21 20 24 24 C 1.42904 * 114.09574 * 298.88951 * 23 22 21 25 25 C 1.53094 * 109.41565 * 61.16038 * 24 23 22 26 26 N 1.32468 * 121.96035 * 0.02562 * 18 17 16 27 27 C 1.32015 * 120.91360 * 359.97342 * 26 18 17 28 28 H 0.96996 * 119.99580 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47219 * 60.00085 * 9 7 2 30 30 H 1.09001 * 109.47520 * 300.00370 * 9 7 2 31 31 H 1.09004 * 109.46842 * 59.99960 * 10 9 7 32 32 H 1.09001 * 109.47236 * 300.00650 * 10 9 7 33 33 H 1.09004 * 109.47316 * 60.00110 * 11 10 9 34 34 H 1.09009 * 109.47232 * 300.00137 * 11 10 9 35 35 H 0.96997 * 120.00072 * 0.02562 * 12 11 10 36 36 H 1.08002 * 120.50922 * 359.97438 * 16 15 13 37 37 H 1.08996 * 109.54549 * 30.00148 * 20 19 18 38 38 H 1.09000 * 109.52220 * 303.05536 * 21 20 19 39 39 H 1.09000 * 109.52761 * 63.25293 * 21 20 19 40 40 H 1.08999 * 109.40448 * 297.49496 * 22 21 20 41 41 H 1.09001 * 109.48370 * 177.50589 * 22 21 20 42 42 H 1.08998 * 109.48163 * 301.17593 * 24 23 22 43 43 H 1.09004 * 109.49029 * 181.14762 * 24 23 22 44 44 H 1.09002 * 109.52003 * 182.48378 * 25 24 23 45 45 H 1.08995 * 109.57509 * 62.32462 * 25 24 23 46 46 H 1.08001 * 120.51027 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9870 -0.0025 12 7 2.4322 -6.1006 -0.0031 13 6 1.9829 -7.3712 -0.0042 14 8 0.7876 -7.5935 -0.0043 15 6 2.9423 -8.4934 -0.0043 16 6 2.4958 -9.8208 -0.0049 17 7 3.3864 -10.7954 -0.0109 18 6 4.6844 -10.5311 -0.0108 19 8 5.5636 -11.5595 -0.0176 20 6 6.9529 -11.2251 -0.0165 21 6 7.4511 -11.1009 -1.4597 22 6 8.9567 -10.8229 -1.4493 23 8 9.6300 -11.8695 -0.7467 24 6 9.2383 -11.9997 0.6214 25 6 7.7446 -12.3273 0.6942 26 7 5.1473 -9.2900 -0.0041 27 6 4.3231 -8.2587 0.0021 28 1 -0.4849 0.8400 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8726 -3.6047 0.8877 32 1 2.8713 -3.6039 -0.8922 33 1 0.8532 -5.0441 -0.8922 34 1 0.8539 -5.0454 0.8878 35 1 3.3859 -5.9234 -0.0027 36 1 1.4391 -10.0439 -0.0050 37 1 7.0997 -10.2781 0.5027 38 1 7.2576 -12.0316 -1.9932 39 1 6.9314 -10.2810 -1.9553 40 1 9.1458 -9.8714 -0.9524 41 1 9.3252 -10.7775 -2.4741 42 1 9.4311 -11.0635 1.1454 43 1 9.8096 -12.8020 1.0885 44 1 7.4344 -12.3834 1.7376 45 1 7.5562 -13.2835 0.2062 46 1 4.7076 -7.2495 0.0071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199521146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:58 Heat of formation + Delta-G solvation = -80.275700 kcal Electronic energy + Delta-G solvation = -27501.383266 eV Core-core repulsion = 23391.448516 eV Total energy + Delta-G solvation = -4109.934750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85016 -40.29591 -39.38455 -38.22703 -35.62888 -34.45061 -33.48327 -33.37192 -32.02644 -31.73905 -30.89955 -27.10052 -25.91496 -25.20959 -24.34871 -24.17365 -23.00135 -21.07395 -21.00365 -20.41960 -19.42542 -18.36227 -17.84103 -16.88838 -16.74133 -16.40341 -16.34903 -15.61321 -15.55379 -15.47287 -15.34711 -14.70046 -14.53415 -14.37780 -14.23884 -14.04033 -13.90747 -13.77726 -13.12869 -12.79520 -12.36958 -12.25876 -11.93600 -11.91752 -11.85215 -11.78958 -11.45527 -11.16472 -10.97347 -10.94002 -10.82467 -10.63319 -10.29452 -10.14606 -9.95582 -9.68283 -9.49834 -9.49103 -9.16936 -8.94716 -8.42521 -6.06918 -4.10236 0.15720 0.56921 1.92996 2.66980 3.08121 3.26362 3.28549 3.34255 3.37252 3.43939 3.44667 3.97140 4.03457 4.08350 4.16500 4.32795 4.39470 4.42242 4.51514 4.62372 4.68032 4.84498 4.87896 5.04398 5.11468 5.18222 5.19459 5.29116 5.38932 5.45838 5.51112 5.59791 5.67019 5.69938 6.05365 6.19333 6.28804 6.49592 6.58582 6.60834 6.69869 6.90750 7.43908 7.54671 7.57607 7.69100 7.91367 8.11259 8.32182 8.96581 9.54371 11.04298 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.001832 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.122989 B =15278.144626 C =16843.002324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.718 5.718 13 C 0.567 3.433 14 O -0.534 6.534 15 C -0.278 4.278 16 C 0.249 3.751 17 N -0.526 5.526 18 C 0.516 3.484 19 O -0.277 6.277 20 C 0.091 3.909 21 C -0.173 4.173 22 C 0.066 3.934 23 O -0.381 6.381 24 C 0.067 3.933 25 C -0.155 4.155 26 N -0.570 5.570 27 C 0.224 3.776 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.396 0.604 36 H 0.192 0.808 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.393 -24.886 0.200 30.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.369 5.369 13 C 0.352 3.648 14 O -0.412 6.412 15 C -0.287 4.287 16 C 0.082 3.918 17 N -0.250 5.250 18 C 0.215 3.785 19 O -0.178 6.178 20 C 0.035 3.965 21 C -0.211 4.211 22 C -0.011 4.011 23 O -0.299 6.299 24 C -0.010 4.010 25 C -0.192 4.192 26 N -0.300 5.300 27 C 0.057 3.943 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.231 0.769 36 H 0.209 0.791 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.075 0.925 43 H 0.123 0.877 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 17.232 -26.143 0.109 31.312 hybrid contribution 0.083 2.122 0.108 2.126 sum 17.315 -24.022 0.217 29.612 Atomic orbital electron populations 1.69973 1.06051 1.26636 1.50502 1.25035 0.94870 0.99349 0.95246 0.86525 0.80022 0.83737 0.77632 1.19766 1.20986 1.20993 1.21222 0.93019 0.90898 1.50986 0.92580 1.19038 0.93842 0.90816 0.97757 1.21909 0.99852 0.93246 1.00975 1.21741 0.91728 0.84688 1.02439 1.46113 1.10900 1.05698 1.74167 1.17609 0.87593 0.82435 0.77161 1.90812 1.15734 1.84602 1.50067 1.21709 0.96027 0.97210 1.13705 1.23430 0.99804 0.85716 0.82855 1.67770 0.99866 1.37261 1.20120 1.20932 0.86761 0.84480 0.86344 1.86140 1.17196 1.28714 1.85701 1.22579 0.76127 1.00406 0.97414 1.22689 0.97673 1.04209 0.96571 1.22564 0.90069 0.90342 0.98091 1.87968 1.64090 1.54657 1.23198 1.22578 0.92862 1.02122 0.83480 1.22380 0.95469 0.99384 1.02015 1.68006 1.40681 0.99305 1.21959 1.23243 0.88264 0.97889 0.84940 0.92941 0.96195 0.96192 0.92618 0.92619 0.91316 0.91327 0.76938 0.79117 0.88417 0.89991 0.89939 0.92427 0.88020 0.92518 0.87740 0.89670 0.89565 0.80532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16 11 C 0.12 1.85 5.67 -4.04 -0.02 1.83 16 12 N -0.72 -8.95 5.51 -61.32 -0.34 -9.28 16 13 C 0.57 7.50 7.78 -12.43 -0.10 7.41 16 14 O -0.53 -9.00 16.44 5.30 0.09 -8.91 16 15 C -0.28 -2.96 5.91 -104.70 -0.62 -3.57 16 16 C 0.25 2.69 10.87 -16.79 -0.18 2.51 16 17 N -0.53 -6.25 10.45 -14.39 -0.15 -6.40 16 18 C 0.52 5.80 8.45 -91.00 -0.77 5.04 16 19 O -0.28 -2.91 9.84 -17.58 -0.17 -3.08 16 20 C 0.09 0.70 2.44 -26.55 -0.06 0.64 16 21 C -0.17 -1.21 5.77 -26.58 -0.15 -1.36 16 22 C 0.07 0.39 6.84 37.21 0.25 0.65 16 23 O -0.38 -2.80 10.77 -35.23 -0.38 -3.18 16 24 C 0.07 0.35 6.84 37.21 0.25 0.60 16 25 C -0.15 -0.93 5.79 -26.59 -0.15 -1.08 16 26 N -0.57 -5.62 8.62 -14.39 -0.12 -5.74 16 27 C 0.22 1.98 10.81 -16.79 -0.18 1.79 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.40 3.68 6.60 -40.82 -0.27 3.41 16 36 H 0.19 1.80 7.74 -52.49 -0.41 1.40 16 37 H 0.10 0.76 6.95 -51.93 -0.36 0.39 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.18 1.00 6.53 -52.49 -0.34 0.66 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -33.44 385.61 -8.81 -42.25 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.84 Total: -1.52 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.42 Total: -0.45 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.12 Total: -46.91 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.47 Total: -15.18 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.44 -8.81 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199521146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.022 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds