Wall clock time and date at job start Tue Mar 31 2020 18:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99974 * 2 1 4 4 H 1.48495 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47201 * 300.00317 * 3 2 1 6 6 H 1.48506 * 109.46951 * 59.99968 * 3 2 1 7 7 C 1.37873 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47273 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47308 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47386 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00000 * 180.02562 * 12 11 10 14 14 O 1.21579 * 120.00564 * 359.97438 * 13 12 11 15 15 C 1.47630 * 119.99727 * 180.02562 * 13 12 11 16 16 C 1.40056 * 120.88146 * 179.97438 * 15 13 12 17 17 N 1.32020 * 118.98627 * 179.70315 * 16 15 13 18 18 C 1.32465 * 120.91617 * 0.27864 * 17 16 15 19 19 O 1.35297 * 119.02122 * 180.02562 * 18 17 16 20 20 C 1.42897 * 116.99835 * 180.02562 * 19 18 17 21 21 C 1.53176 * 109.54133 * 269.82124 * 20 19 18 22 22 C 1.53111 * 109.15568 * 183.24533 * 21 20 19 23 23 O 1.42903 * 109.48788 * 57.47467 * 22 21 20 24 24 C 1.42904 * 114.09574 * 298.88951 * 23 22 21 25 25 C 1.53094 * 109.41565 * 61.16038 * 24 23 22 26 26 N 1.32468 * 121.96035 * 0.02562 * 18 17 16 27 27 C 1.32015 * 120.91360 * 359.97342 * 26 18 17 28 28 H 0.96996 * 119.99580 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47219 * 60.00085 * 9 7 2 30 30 H 1.09001 * 109.47520 * 300.00370 * 9 7 2 31 31 H 1.09004 * 109.46842 * 59.99960 * 10 9 7 32 32 H 1.09001 * 109.47236 * 300.00650 * 10 9 7 33 33 H 1.09004 * 109.47316 * 60.00110 * 11 10 9 34 34 H 1.09009 * 109.47232 * 300.00137 * 11 10 9 35 35 H 0.96997 * 120.00072 * 0.02562 * 12 11 10 36 36 H 1.08002 * 120.50922 * 359.97438 * 16 15 13 37 37 H 1.08996 * 109.54549 * 30.00148 * 20 19 18 38 38 H 1.09000 * 109.52220 * 303.05536 * 21 20 19 39 39 H 1.09000 * 109.52761 * 63.25293 * 21 20 19 40 40 H 1.08999 * 109.40448 * 297.49496 * 22 21 20 41 41 H 1.09001 * 109.48370 * 177.50589 * 22 21 20 42 42 H 1.08998 * 109.48163 * 301.17593 * 24 23 22 43 43 H 1.09004 * 109.49029 * 181.14762 * 24 23 22 44 44 H 1.09002 * 109.52003 * 182.48378 * 25 24 23 45 45 H 1.08995 * 109.57509 * 62.32462 * 25 24 23 46 46 H 1.08001 * 120.51027 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9870 -0.0025 12 7 2.4322 -6.1006 -0.0031 13 6 1.9829 -7.3712 -0.0042 14 8 0.7876 -7.5935 -0.0043 15 6 2.9423 -8.4934 -0.0043 16 6 2.4958 -9.8208 -0.0049 17 7 3.3864 -10.7954 -0.0109 18 6 4.6844 -10.5311 -0.0108 19 8 5.5636 -11.5595 -0.0176 20 6 6.9529 -11.2251 -0.0165 21 6 7.4511 -11.1009 -1.4597 22 6 8.9567 -10.8229 -1.4493 23 8 9.6300 -11.8695 -0.7467 24 6 9.2383 -11.9997 0.6214 25 6 7.7446 -12.3273 0.6942 26 7 5.1473 -9.2900 -0.0041 27 6 4.3231 -8.2587 0.0021 28 1 -0.4849 0.8400 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8726 -3.6047 0.8877 32 1 2.8713 -3.6039 -0.8922 33 1 0.8532 -5.0441 -0.8922 34 1 0.8539 -5.0454 0.8878 35 1 3.3859 -5.9234 -0.0027 36 1 1.4391 -10.0439 -0.0050 37 1 7.0997 -10.2781 0.5027 38 1 7.2576 -12.0316 -1.9932 39 1 6.9314 -10.2810 -1.9553 40 1 9.1458 -9.8714 -0.9524 41 1 9.3252 -10.7775 -2.4741 42 1 9.4311 -11.0635 1.1454 43 1 9.8096 -12.8020 1.0885 44 1 7.4344 -12.3834 1.7376 45 1 7.5562 -13.2835 0.2062 46 1 4.7076 -7.2495 0.0071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199521146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:57 Heat of formation + Delta-G solvation = -105.554096 kcal Electronic energy + Delta-G solvation = -27502.479419 eV Core-core repulsion = 23391.448516 eV Total energy + Delta-G solvation = -4111.030903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.65425 -41.04138 -40.28934 -38.92776 -37.01303 -35.45986 -35.00572 -34.06955 -33.30825 -32.23758 -32.14947 -28.69653 -26.77142 -26.00762 -25.35777 -24.65838 -24.39733 -22.35158 -21.85787 -21.52175 -20.15711 -19.19233 -18.92122 -18.36994 -17.53629 -17.29399 -16.95253 -16.78445 -16.68024 -16.38985 -16.28944 -15.85752 -15.57724 -15.38342 -15.14309 -14.93777 -14.64038 -14.58544 -14.24567 -13.74481 -13.73172 -13.47632 -13.31721 -13.15745 -12.77312 -12.52665 -12.42177 -12.37506 -12.33281 -12.24227 -11.69841 -11.64407 -11.61200 -11.45579 -11.22757 -11.00912 -10.77474 -10.54014 -10.46628 -10.39258 -10.05811 -8.17876 -6.28641 -0.69113 -0.19854 1.20966 1.42874 1.43582 1.56043 1.67741 2.01107 2.43568 2.57892 2.67242 2.89483 3.16437 3.22014 3.35684 3.53202 3.57138 3.63372 3.79367 3.86775 3.97136 4.18468 4.19991 4.26158 4.28091 4.42728 4.52711 4.58739 4.59450 4.68209 4.75174 4.82768 4.94843 4.96886 4.98532 4.98591 5.08840 5.21260 5.37705 5.43203 5.55521 5.74807 5.85257 5.87533 6.16967 6.24404 6.43907 6.73658 6.89822 7.09311 7.41018 8.94195 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.001832 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.122989 B =15278.144626 C =16843.002324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.130 3.870 12 N -0.705 5.705 13 C 0.573 3.427 14 O -0.575 6.575 15 C -0.282 4.282 16 C 0.249 3.751 17 N -0.548 5.548 18 C 0.510 3.490 19 O -0.290 6.290 20 C 0.086 3.914 21 C -0.168 4.168 22 C 0.067 3.933 23 O -0.399 6.399 24 C 0.065 3.935 25 C -0.151 4.151 26 N -0.567 5.567 27 C 0.238 3.762 28 H 0.262 0.738 29 H -0.007 1.007 30 H -0.007 1.007 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.415 0.585 36 H 0.197 0.803 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.343 -24.628 0.429 31.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.086 0.914 9 C -0.017 4.017 10 C -0.141 4.141 11 C 0.006 3.994 12 N -0.356 5.356 13 C 0.360 3.640 14 O -0.456 6.456 15 C -0.291 4.291 16 C 0.082 3.918 17 N -0.273 5.273 18 C 0.210 3.790 19 O -0.190 6.190 20 C 0.030 3.970 21 C -0.206 4.206 22 C -0.010 4.010 23 O -0.318 6.318 24 C -0.011 4.011 25 C -0.188 4.188 26 N -0.296 5.296 27 C 0.071 3.929 28 H 0.071 0.929 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.253 0.747 36 H 0.214 0.786 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 20.242 -25.905 0.338 32.877 hybrid contribution -0.825 1.974 0.040 2.140 sum 19.418 -23.930 0.378 30.820 Atomic orbital electron populations 1.70116 1.07892 1.27621 1.51900 1.26010 0.95729 1.03508 0.94985 0.85397 0.79311 0.78842 0.77468 1.18073 1.20798 1.20803 1.21726 0.93814 0.91988 1.50024 0.91389 1.18966 0.94545 0.92982 0.95183 1.21614 0.98464 0.91587 1.02446 1.21314 0.91806 0.84989 1.01273 1.45796 1.11388 1.04635 1.73819 1.17845 0.87353 0.82844 0.75984 1.90801 1.17671 1.85156 1.51923 1.21412 0.96319 0.95951 1.15404 1.23554 1.00088 0.85855 0.82300 1.67776 1.00472 1.37791 1.21293 1.21137 0.86787 0.85136 0.85985 1.86142 1.18367 1.29116 1.85420 1.22828 0.74935 1.01165 0.98082 1.22640 0.98526 1.03505 0.95969 1.22637 0.89035 0.90479 0.98804 1.87946 1.64416 1.55179 1.24263 1.22733 0.92208 1.03375 0.82802 1.22390 0.95893 0.98396 1.02161 1.68131 1.40375 0.98948 1.22124 1.23771 0.87277 0.99098 0.82742 0.92922 0.98882 0.98868 0.91036 0.91056 0.92669 0.92660 0.74698 0.78608 0.88156 0.90980 0.90379 0.91376 0.87066 0.91337 0.86177 0.88863 0.90345 0.77002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 3 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.54 -28.80 9.11 25.60 0.23 -28.57 16 8 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.03 4.97 29.85 0.15 1.18 16 10 C -0.10 -3.57 5.27 30.59 0.16 -3.41 16 11 C 0.13 4.05 5.67 86.38 0.49 4.54 16 12 N -0.70 -16.12 5.51 -466.17 -2.57 -18.69 16 13 C 0.57 14.48 7.78 86.72 0.67 15.16 16 14 O -0.57 -19.38 16.44 -3.96 -0.07 -19.45 16 15 C -0.28 -5.56 5.91 -19.91 -0.12 -5.68 16 16 C 0.25 5.23 10.87 85.11 0.93 6.16 16 17 N -0.55 -12.74 10.45 -312.41 -3.26 -16.00 16 18 C 0.51 10.93 8.45 180.48 1.53 12.45 16 19 O -0.29 -5.88 9.84 -85.83 -0.84 -6.72 16 20 C 0.09 1.22 2.44 30.71 0.08 1.29 16 21 C -0.17 -2.17 5.77 30.69 0.18 -1.99 16 22 C 0.07 0.69 6.84 72.02 0.49 1.18 16 23 O -0.40 -5.23 10.77 -148.98 -1.60 -6.84 16 24 C 0.07 0.55 6.84 72.01 0.49 1.05 16 25 C -0.15 -1.61 5.79 30.69 0.18 -1.43 16 26 N -0.57 -9.95 8.62 -312.40 -2.69 -12.64 16 27 C 0.24 3.55 10.81 85.11 0.92 4.47 16 28 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.88 8.14 -2.38 -0.02 1.87 16 35 H 0.42 6.26 6.60 -92.71 -0.61 5.65 16 36 H 0.20 3.74 7.74 -2.91 -0.02 3.71 16 37 H 0.10 1.36 6.95 -2.39 -0.02 1.35 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.21 1.49 6.53 -2.91 -0.02 1.47 16 Total: -1.00 -73.04 385.61 -1.51 -74.55 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.39 Total: 10.10 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.84 Total: 6.58 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -8.24 Total: -102.94 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -2.51 Total: -33.01 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.04 -1.51 -74.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199521146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.008 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds