Wall clock time and date at job start Tue Mar 31 2020 18:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48503 * 109.46889 * 240.00293 * 3 2 1 5 5 H 1.48503 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47393 * 119.99930 * 3 2 1 7 7 C 1.38813 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99342 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00201 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99731 * 180.27010 * 9 7 2 11 11 C 1.52995 * 109.46958 * 179.72234 * 10 9 7 12 12 H 1.09003 * 109.47081 * 60.00205 * 11 10 9 13 13 C 1.54805 * 109.47186 * 180.02562 * 11 10 9 14 14 N 1.45121 * 109.54371 * 187.88378 * 13 11 10 15 15 C 1.34776 * 118.76267 * 90.73340 * 14 13 11 16 16 O 1.21611 * 119.99622 * 354.38474 * 15 14 13 17 17 C 1.47398 * 119.99825 * 174.38505 * 15 14 13 18 18 C 1.37359 * 128.56497 * 323.93687 * 17 15 14 19 19 O 1.33500 * 106.34006 * 179.85926 * 18 17 15 20 20 N 1.20654 * 113.15308 * 0.45391 * 19 18 17 21 21 C 1.30017 * 112.30432 * 359.71416 * 20 19 18 22 22 C 1.50701 * 127.33299 * 179.97438 * 21 20 19 23 23 C 1.52997 * 117.50358 * 8.78979 * 22 21 20 24 24 C 1.53007 * 117.49884 * 300.13049 * 22 21 20 25 25 C 1.47516 * 122.47871 * 270.71916 * 14 13 11 26 26 C 1.53561 * 111.03309 * 41.62600 * 25 14 13 27 27 C 1.51537 * 109.58187 * 39.97969 * 26 25 14 28 28 O 1.38013 * 109.47008 * 300.01051 * 11 10 9 29 29 H 0.97002 * 119.99862 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99991 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47321 * 299.72454 * 10 9 7 32 32 H 1.09003 * 109.47057 * 59.72425 * 10 9 7 33 33 H 1.09010 * 109.45721 * 307.89984 * 13 11 10 34 34 H 1.08998 * 109.45895 * 67.86883 * 13 11 10 35 35 H 1.08002 * 126.83114 * 0.02562 * 18 17 15 36 36 H 1.09004 * 115.55026 * 154.46412 * 22 21 20 37 37 H 1.09006 * 117.49532 * 359.97438 * 23 22 21 38 38 H 1.08991 * 117.50111 * 145.01686 * 23 22 21 39 39 H 1.08996 * 117.49673 * 214.98016 * 24 22 21 40 40 H 1.09000 * 117.49983 * 359.97438 * 24 22 21 41 41 H 1.08997 * 109.16306 * 162.02791 * 25 14 13 42 42 H 1.09002 * 109.15974 * 281.22524 * 25 14 13 43 43 H 1.09000 * 109.45398 * 160.01092 * 26 25 14 44 44 H 1.09000 * 109.45383 * 279.94302 * 26 25 14 45 45 H 1.09001 * 109.59276 * 28.37725 * 27 26 25 46 46 H 1.08995 * 109.59016 * 148.82051 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0071 11 6 1.0638 -4.8197 0.0126 12 1 0.4374 -4.7664 -0.8778 13 6 1.8378 -6.1603 0.0202 14 7 0.9074 -7.2590 -0.1621 15 6 0.6442 -7.6850 -1.4134 16 8 1.1016 -7.0867 -2.3682 17 6 -0.1981 -8.8761 -1.6245 18 6 -0.2635 -10.0230 -0.8715 19 8 -1.1713 -10.8064 -1.4584 20 7 -1.6538 -10.3139 -2.4485 21 6 -1.1715 -9.1324 -2.6972 22 6 -1.5323 -8.2202 -3.8412 23 6 -2.7218 -8.6206 -4.7161 24 6 -1.2963 -8.7399 -5.2608 25 6 0.2392 -7.9274 0.9705 26 6 -0.2255 -6.9048 2.0176 27 6 -0.7817 -5.6802 1.3196 28 8 0.2699 -4.7407 1.1388 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6850 -3.7190 -0.8824 32 1 2.6844 -3.7101 0.8976 33 1 2.5666 -6.1634 -0.7904 34 1 2.3541 -6.2761 0.9732 35 1 0.3044 -10.2456 0.0198 36 1 -1.3749 -7.1565 -3.6620 37 1 -3.2432 -9.5443 -4.4645 38 1 -3.3468 -7.8206 -5.1127 39 1 -0.9840 -8.0182 -6.0155 40 1 -0.8796 -9.7415 -5.3672 41 1 -0.6251 -8.4792 0.6009 42 1 0.9357 -8.6249 1.4358 43 1 -1.0005 -7.3504 2.6412 44 1 0.6197 -6.6145 2.6416 45 1 -1.1880 -5.9655 0.3492 46 1 -1.5674 -5.2363 1.9309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201391026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:46 Heat of formation + Delta-G solvation = 39.584097 kcal Electronic energy + Delta-G solvation = -29720.670797 eV Core-core repulsion = 25615.933558 eV Total energy + Delta-G solvation = -4104.737239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.27344 -40.61970 -38.51842 -37.69410 -35.81863 -34.60218 -33.59353 -32.87931 -32.25140 -30.92020 -28.96347 -26.86687 -25.85688 -24.79815 -24.16461 -22.70579 -22.48116 -21.78932 -20.96537 -20.60162 -19.89990 -18.18992 -17.86768 -17.27471 -17.08318 -16.54302 -16.45602 -15.83385 -15.82341 -15.28447 -14.82812 -14.60281 -14.32756 -13.96194 -13.74820 -13.65432 -13.10386 -13.08745 -12.69637 -12.42855 -12.31631 -12.04748 -12.00099 -11.87993 -11.76187 -11.61051 -11.43934 -11.00929 -10.81943 -10.74933 -10.71156 -10.37835 -10.20268 -10.02271 -9.90591 -9.82187 -9.65620 -9.45147 -8.81046 -8.66547 -6.83069 -5.67640 -2.95859 0.77391 1.42654 2.38971 2.69793 2.90086 3.49584 3.53195 3.54650 3.55174 3.59970 3.91997 3.93549 4.28561 4.47226 4.54472 4.58864 4.62646 4.66782 4.70484 4.74031 4.84981 5.10291 5.16566 5.24943 5.28534 5.37061 5.38666 5.41683 5.44150 5.55813 5.63834 5.64872 5.79423 5.83041 5.85436 5.91976 5.95138 6.07149 6.34517 6.38820 6.66120 6.78335 7.01969 7.75473 7.84458 7.90909 7.98919 8.50659 9.62116 10.20551 10.56625 11.55180 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.002916 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.287437 B = 9598.568165 C =10625.666181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.089 3.911 12 H 0.053 0.947 13 C 0.083 3.917 14 N -0.601 5.601 15 C 0.585 3.415 16 O -0.512 6.512 17 C -0.239 4.239 18 C -0.015 4.015 19 O 0.099 5.901 20 N -0.356 5.356 21 C 0.101 3.899 22 C -0.089 4.089 23 C -0.164 4.164 24 C -0.154 4.154 25 C 0.096 3.904 26 C -0.166 4.166 27 C 0.073 3.927 28 O -0.366 6.366 29 H 0.254 0.746 30 H 0.387 0.613 31 H 0.035 0.965 32 H 0.026 0.974 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.227 0.773 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -25.564 -0.149 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.369 5.369 10 C 0.038 3.962 11 C 0.028 3.972 12 H 0.071 0.929 13 C -0.040 4.040 14 N -0.335 5.335 15 C 0.372 3.628 16 O -0.387 6.387 17 C -0.246 4.246 18 C -0.097 4.097 19 O 0.039 5.961 20 N -0.062 5.062 21 C -0.061 4.061 22 C -0.108 4.108 23 C -0.202 4.202 24 C -0.192 4.192 25 C -0.026 4.026 26 C -0.204 4.204 27 C -0.004 4.004 28 O -0.284 6.284 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.243 0.757 36 H 0.151 0.849 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.064 0.936 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.683 -25.776 -1.082 26.060 hybrid contribution 0.709 1.182 0.314 1.414 sum -2.974 -24.594 -0.768 24.785 Atomic orbital electron populations 1.69671 1.05098 1.25581 1.57746 1.24733 0.95511 0.97609 1.03157 0.86261 0.78486 0.83596 0.77801 1.21306 1.21744 1.21315 1.19188 0.90962 0.84157 1.42639 0.91245 1.42198 1.06051 0.99438 1.89248 1.20612 0.92337 0.84729 0.98511 1.22276 0.92594 0.93879 0.88410 0.92934 1.22499 0.92130 0.85770 1.03591 1.47777 1.45057 1.35080 1.05545 1.17032 0.79958 0.82481 0.83330 1.90864 1.51039 1.56414 1.40387 1.22260 1.04867 0.98459 0.99001 1.26499 0.93689 0.90180 0.99351 1.84587 1.41684 1.40392 1.29466 1.73605 1.19524 1.11148 1.01946 1.23833 0.94110 0.91725 0.96422 1.20287 1.05042 0.97860 0.87571 1.23075 0.91061 1.03829 1.02186 1.23024 0.98967 1.02818 0.94362 1.22261 0.97233 0.95534 0.87559 1.22501 1.02844 0.96801 0.98251 1.22114 0.89966 0.89002 0.99313 1.86453 1.44432 1.54195 1.43323 0.93576 0.77862 0.94765 0.95598 0.88684 0.89457 0.75680 0.84944 0.88067 0.87659 0.87474 0.88629 0.89879 0.91147 0.89537 0.89688 0.93610 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.08 13.06 55.49 0.72 -28.35 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -19.38 5.49 -59.91 -0.33 -19.71 16 10 C 0.17 3.51 5.95 -4.04 -0.02 3.48 16 11 C 0.09 1.55 2.73 -25.78 -0.07 1.48 16 12 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 13 C 0.08 1.13 4.82 -3.83 -0.02 1.11 16 14 N -0.60 -6.92 2.19 -173.75 -0.38 -7.30 16 15 C 0.59 7.79 7.59 -12.53 -0.10 7.70 16 16 O -0.51 -8.80 16.60 5.27 0.09 -8.71 16 17 C -0.24 -2.61 5.50 -102.90 -0.57 -3.18 16 18 C -0.02 -0.11 9.99 30.41 0.30 0.19 16 19 O 0.10 0.89 11.06 18.63 0.21 1.10 16 20 N -0.36 -4.00 11.71 34.78 0.41 -3.59 16 21 C 0.10 1.19 7.08 -79.77 -0.56 0.63 16 22 C -0.09 -1.02 6.31 -91.77 -0.58 -1.60 16 23 C -0.16 -1.53 10.17 -26.70 -0.27 -1.80 16 24 C -0.15 -1.50 10.24 -26.69 -0.27 -1.77 16 25 C 0.10 0.74 4.87 -3.19 -0.02 0.73 16 26 C -0.17 -1.47 5.78 -27.18 -0.16 -1.63 16 27 C 0.07 0.95 6.38 36.42 0.23 1.18 16 28 O -0.37 -6.42 9.18 -26.53 -0.24 -6.67 16 29 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.39 11.05 7.53 -40.82 -0.31 10.74 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.35 7.36 -51.92 -0.38 0.97 16 34 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 35 H 0.23 0.62 7.03 -52.49 -0.37 0.25 16 36 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.10 0.95 7.97 -51.93 -0.41 0.54 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 0.55 5.17 -51.93 -0.27 0.28 16 42 H 0.07 0.36 7.94 -51.93 -0.41 -0.06 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 45 H 0.05 0.62 7.40 -51.93 -0.38 0.23 16 46 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -35.79 379.00 -7.91 -43.70 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.73 Total: 6.96 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.35 Total: -1.05 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.42 Total: -58.96 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.05 Total: -14.28 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.79 -7.91 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201391026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.281 kcal (2) G-P(sol) polarization free energy of solvation -35.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds