Wall clock time and date at job start Tue Mar 31 2020 18:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48503 * 109.46889 * 240.00293 * 3 2 1 5 5 H 1.48503 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47393 * 119.99930 * 3 2 1 7 7 C 1.38813 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99342 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00201 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99731 * 180.27010 * 9 7 2 11 11 C 1.52995 * 109.46958 * 179.72234 * 10 9 7 12 12 H 1.09003 * 109.47081 * 60.00205 * 11 10 9 13 13 C 1.54805 * 109.47186 * 180.02562 * 11 10 9 14 14 N 1.45121 * 109.54371 * 187.88378 * 13 11 10 15 15 C 1.34776 * 118.76267 * 90.73340 * 14 13 11 16 16 O 1.21611 * 119.99622 * 354.38474 * 15 14 13 17 17 C 1.47398 * 119.99825 * 174.38505 * 15 14 13 18 18 C 1.37359 * 128.56497 * 323.93687 * 17 15 14 19 19 O 1.33500 * 106.34006 * 179.85926 * 18 17 15 20 20 N 1.20654 * 113.15308 * 0.45391 * 19 18 17 21 21 C 1.30017 * 112.30432 * 359.71416 * 20 19 18 22 22 C 1.50701 * 127.33299 * 179.97438 * 21 20 19 23 23 C 1.52997 * 117.50358 * 8.78979 * 22 21 20 24 24 C 1.53007 * 117.49884 * 300.13049 * 22 21 20 25 25 C 1.47516 * 122.47871 * 270.71916 * 14 13 11 26 26 C 1.53561 * 111.03309 * 41.62600 * 25 14 13 27 27 C 1.51537 * 109.58187 * 39.97969 * 26 25 14 28 28 O 1.38013 * 109.47008 * 300.01051 * 11 10 9 29 29 H 0.97002 * 119.99862 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99991 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47321 * 299.72454 * 10 9 7 32 32 H 1.09003 * 109.47057 * 59.72425 * 10 9 7 33 33 H 1.09010 * 109.45721 * 307.89984 * 13 11 10 34 34 H 1.08998 * 109.45895 * 67.86883 * 13 11 10 35 35 H 1.08002 * 126.83114 * 0.02562 * 18 17 15 36 36 H 1.09004 * 115.55026 * 154.46412 * 22 21 20 37 37 H 1.09006 * 117.49532 * 359.97438 * 23 22 21 38 38 H 1.08991 * 117.50111 * 145.01686 * 23 22 21 39 39 H 1.08996 * 117.49673 * 214.98016 * 24 22 21 40 40 H 1.09000 * 117.49983 * 359.97438 * 24 22 21 41 41 H 1.08997 * 109.16306 * 162.02791 * 25 14 13 42 42 H 1.09002 * 109.15974 * 281.22524 * 25 14 13 43 43 H 1.09000 * 109.45398 * 160.01092 * 26 25 14 44 44 H 1.09000 * 109.45383 * 279.94302 * 26 25 14 45 45 H 1.09001 * 109.59276 * 28.37725 * 27 26 25 46 46 H 1.08995 * 109.59016 * 148.82051 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0071 11 6 1.0638 -4.8197 0.0126 12 1 0.4374 -4.7664 -0.8778 13 6 1.8378 -6.1603 0.0202 14 7 0.9074 -7.2590 -0.1621 15 6 0.6442 -7.6850 -1.4134 16 8 1.1016 -7.0867 -2.3682 17 6 -0.1981 -8.8761 -1.6245 18 6 -0.2635 -10.0230 -0.8715 19 8 -1.1713 -10.8064 -1.4584 20 7 -1.6538 -10.3139 -2.4485 21 6 -1.1715 -9.1324 -2.6972 22 6 -1.5323 -8.2202 -3.8412 23 6 -2.7218 -8.6206 -4.7161 24 6 -1.2963 -8.7399 -5.2608 25 6 0.2392 -7.9274 0.9705 26 6 -0.2255 -6.9048 2.0176 27 6 -0.7817 -5.6802 1.3196 28 8 0.2699 -4.7407 1.1388 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6850 -3.7190 -0.8824 32 1 2.6844 -3.7101 0.8976 33 1 2.5666 -6.1634 -0.7904 34 1 2.3541 -6.2761 0.9732 35 1 0.3044 -10.2456 0.0198 36 1 -1.3749 -7.1565 -3.6620 37 1 -3.2432 -9.5443 -4.4645 38 1 -3.3468 -7.8206 -5.1127 39 1 -0.9840 -8.0182 -6.0155 40 1 -0.8796 -9.7415 -5.3672 41 1 -0.6251 -8.4792 0.6009 42 1 0.9357 -8.6249 1.4358 43 1 -1.0005 -7.3504 2.6412 44 1 0.6197 -6.6145 2.6416 45 1 -1.1880 -5.9655 0.3492 46 1 -1.5674 -5.2363 1.9309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201391026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:45 Heat of formation + Delta-G solvation = 15.150203 kcal Electronic energy + Delta-G solvation = -29721.730330 eV Core-core repulsion = 25615.933558 eV Total energy + Delta-G solvation = -4105.796772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.05565 -41.66417 -39.69952 -38.51156 -36.99551 -36.29129 -34.54156 -34.16215 -33.05788 -32.67532 -30.34433 -28.04739 -27.01602 -25.86794 -25.35681 -24.12434 -23.41399 -22.79492 -22.35249 -21.35924 -20.79452 -19.25900 -19.01413 -18.69157 -18.08800 -17.69391 -17.64201 -16.95709 -16.63205 -16.57888 -16.14010 -15.87715 -15.47208 -15.16459 -14.95683 -14.76235 -14.60799 -14.47208 -13.93252 -13.67412 -13.36198 -13.21212 -13.08683 -12.79581 -12.72777 -12.66900 -12.63481 -12.40423 -12.36305 -12.19857 -12.05315 -11.83397 -11.53511 -11.51813 -11.24916 -10.96453 -10.70328 -10.60628 -10.58164 -9.73830 -9.01134 -7.93775 -5.23696 0.08245 0.59882 1.46305 1.51050 1.51326 1.57159 1.86342 2.17908 2.56499 2.69932 2.74890 2.82568 3.16085 3.39431 3.50623 3.60743 3.77200 3.79561 3.83599 3.93787 3.94955 3.99158 4.07117 4.11977 4.25796 4.37572 4.41383 4.51880 4.54717 4.60559 4.62618 4.66087 4.69440 4.80507 4.85145 4.87766 4.98235 5.08208 5.08577 5.12223 5.18034 5.44066 5.47293 6.11693 6.26423 6.72731 6.93284 7.15010 7.32728 8.07452 8.32358 9.29952 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.002916 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.287437 B = 9598.568165 C =10625.666181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.163 3.837 11 C 0.103 3.897 12 H 0.016 0.984 13 C 0.098 3.902 14 N -0.596 5.596 15 C 0.585 3.415 16 O -0.566 6.566 17 C -0.272 4.272 18 C 0.031 3.969 19 O 0.108 5.892 20 N -0.369 5.369 21 C 0.081 3.919 22 C -0.112 4.112 23 C -0.149 4.149 24 C -0.150 4.150 25 C 0.089 3.911 26 C -0.155 4.155 27 C 0.063 3.937 28 O -0.395 6.395 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.280 0.720 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.033 0.967 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.398 -28.160 1.814 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.808 3.192 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.035 3.965 11 C 0.043 3.957 12 H 0.033 0.967 13 C -0.027 4.027 14 N -0.328 5.328 15 C 0.373 3.627 16 O -0.445 6.445 17 C -0.280 4.280 18 C -0.051 4.051 19 O 0.048 5.952 20 N -0.075 5.075 21 C -0.080 4.080 22 C -0.132 4.132 23 C -0.186 4.186 24 C -0.188 4.188 25 C -0.031 4.031 26 C -0.193 4.193 27 C -0.013 4.013 28 O -0.314 6.314 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.295 0.705 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.102 0.898 45 H 0.051 0.949 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.866 -28.432 0.907 28.590 hybrid contribution 0.414 1.925 -0.242 1.984 sum -2.452 -26.507 0.665 26.629 Atomic orbital electron populations 1.69854 1.06813 1.26119 1.59390 1.25656 0.96456 1.01350 1.03554 0.85128 0.77131 0.78673 0.78309 1.20329 1.22074 1.20032 1.19663 0.91614 0.85259 1.41524 0.90321 1.42416 1.05616 1.00963 1.89320 1.20771 0.93089 0.84011 0.98582 1.21898 0.91823 0.94863 0.87116 0.96652 1.22192 0.91696 0.84265 1.04499 1.47837 1.44509 1.34174 1.06287 1.17369 0.79408 0.82740 0.83151 1.90832 1.53205 1.58323 1.42171 1.22050 1.06018 0.99246 1.00638 1.27310 0.91334 0.87615 0.98828 1.84570 1.41685 1.40157 1.28823 1.73606 1.20135 1.10860 1.02901 1.23949 0.94936 0.92165 0.96933 1.20241 1.07198 0.96950 0.88767 1.23112 0.90715 1.04057 1.00742 1.23073 0.99393 1.02875 0.93489 1.22670 0.98778 0.95599 0.86066 1.22429 1.03633 0.94903 0.98359 1.22393 0.89235 0.90325 0.99332 1.86369 1.45622 1.56649 1.42754 0.94041 0.79553 0.94753 0.94583 0.89770 0.86763 0.70482 0.87339 0.87845 0.86506 0.86903 0.88483 0.88306 0.86462 0.86046 0.89819 0.94850 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.37 13.06 21.65 0.28 -62.08 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 3 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.74 -41.07 5.49 -343.45 -1.88 -42.95 16 10 C 0.16 7.05 5.95 86.38 0.51 7.57 16 11 C 0.10 3.76 2.73 31.21 0.09 3.84 16 12 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 13 C 0.10 2.57 4.82 87.25 0.42 2.99 16 14 N -0.60 -12.71 2.19 -821.86 -1.80 -14.51 16 15 C 0.58 15.44 7.59 86.66 0.66 16.10 16 16 O -0.57 -20.56 16.60 -4.06 -0.07 -20.62 16 17 C -0.27 -5.57 5.50 -18.75 -0.10 -5.67 16 18 C 0.03 0.32 9.99 67.61 0.68 0.99 16 19 O 0.11 1.61 11.06 76.93 0.85 2.46 16 20 N -0.37 -7.75 11.71 -44.78 -0.52 -8.27 16 21 C 0.08 1.91 7.08 45.15 0.32 2.23 16 22 C -0.11 -2.73 6.31 -11.54 -0.07 -2.80 16 23 C -0.15 -2.82 10.17 30.62 0.31 -2.51 16 24 C -0.15 -3.03 10.24 30.62 0.31 -2.71 16 25 C 0.09 0.98 4.87 86.37 0.42 1.40 16 26 C -0.16 -2.20 5.78 30.30 0.18 -2.03 16 27 C 0.06 1.60 6.38 71.50 0.46 2.06 16 28 O -0.39 -14.10 9.18 -117.84 -1.08 -15.18 16 29 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.37 22.41 7.53 -92.71 -0.70 21.71 16 31 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 2.42 7.36 -2.38 -0.02 2.41 16 34 H 0.11 2.41 8.11 -2.39 -0.02 2.39 16 35 H 0.28 -0.43 7.03 -2.91 -0.02 -0.45 16 36 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 37 H 0.10 1.91 7.97 -2.38 -0.02 1.89 16 38 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.10 0.82 5.17 -2.39 -0.01 0.81 16 42 H 0.12 0.35 7.94 -2.39 -0.02 0.33 16 43 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.08 1.29 8.01 -2.39 -0.02 1.27 16 45 H 0.03 0.92 7.40 -2.39 -0.02 0.90 16 46 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -83.62 379.00 3.59 -80.03 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.31 Total: 28.01 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.48 Total: 3.37 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -3.93 Total: -127.82 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.30 Total: -33.35 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -83.62 3.59 -80.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201391026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.176 kcal (2) G-P(sol) polarization free energy of solvation -83.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds