Wall clock time and date at job start Tue Mar 31 2020 18:35:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86803 * 119.99912 * 2 1
4 4 H 1.48498 * 109.46910 * 239.99686 * 3 2 1
5 5 H 1.48502 * 109.47231 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47498 * 119.99859 * 3 2 1
7 7 C 1.38816 * 120.00282 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00225 * 180.02562 * 7 2 1
9 9 N 1.36936 * 119.99693 * 0.02562 * 7 2 1
10 10 C 1.46500 * 119.99909 * 179.97438 * 9 7 2
11 11 C 1.53004 * 109.47127 * 180.02562 * 10 9 7
12 12 H 1.09003 * 109.46322 * 59.99467 * 11 10 9
13 13 C 1.54800 * 109.46885 * 179.97438 * 11 10 9
14 14 N 1.45127 * 109.53703 * 187.88705 * 13 11 10
15 15 C 1.34774 * 118.75534 * 90.68610 * 14 13 11
16 16 O 1.21288 * 120.00266 * 0.02562 * 15 14 13
17 17 C 1.50696 * 119.99789 * 180.02562 * 15 14 13
18 18 O 1.42899 * 109.47128 * 179.97438 * 17 15 14
19 19 C 1.35919 * 117.00229 * 179.97438 * 18 17 15
20 20 C 1.39138 * 120.47655 * 180.02562 * 19 18 17
21 21 C 1.38532 * 118.37390 * 180.02562 * 20 19 18
22 22 C 1.38251 * 119.22227 * 359.97438 * 21 20 19
23 23 N 1.31844 * 120.88677 * 0.02562 * 22 21 20
24 24 C 1.31838 * 121.78320 * 359.69850 * 23 22 21
25 25 C 1.47504 * 122.48426 * 270.71448 * 14 13 11
26 26 C 1.53569 * 111.03023 * 41.62202 * 25 14 13
27 27 C 1.51540 * 109.57768 * 39.98490 * 26 25 14
28 28 O 1.38015 * 109.46831 * 300.00318 * 11 10 9
29 29 H 0.97002 * 120.00339 * 0.02562 * 1 2 3
30 30 H 0.97001 * 119.99953 * 0.02562 * 9 7 2
31 31 H 1.08996 * 109.46768 * 60.00350 * 10 9 7
32 32 H 1.08995 * 109.46917 * 300.00150 * 10 9 7
33 33 H 1.09001 * 109.46022 * 67.86813 * 13 11 10
34 34 H 1.09000 * 109.45413 * 307.90099 * 13 11 10
35 35 H 1.09002 * 109.47363 * 299.99768 * 17 15 14
36 36 H 1.09005 * 109.47494 * 60.00447 * 17 15 14
37 37 H 1.08006 * 120.80876 * 359.97438 * 20 19 18
38 38 H 1.08005 * 120.38606 * 180.02562 * 21 20 19
39 39 H 1.08002 * 119.55533 * 179.97438 * 22 21 20
40 40 H 1.08001 * 119.66553 * 180.28788 * 24 23 22
41 41 H 1.08998 * 109.16054 * 281.22655 * 25 14 13
42 42 H 1.09000 * 109.16618 * 162.02284 * 25 14 13
43 43 H 1.09003 * 109.45722 * 279.95276 * 26 25 14
44 44 H 1.08997 * 109.45202 * 160.01296 * 26 25 14
45 45 H 1.08997 * 109.59138 * 148.81755 * 27 26 25
46 46 H 1.08990 * 109.59168 * 28.37745 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2851 2.7465 -0.0006
6 1 3.1039 1.6966 1.2125
7 6 2.0103 -1.2022 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 2.0581 -3.6568 0.0005
11 6 1.0639 -4.8197 -0.0001
12 1 0.4376 -4.7616 -0.8903
13 6 1.8380 -6.1603 -0.0008
14 7 0.9074 -7.2579 -0.1890
15 6 0.6429 -7.6759 -1.4428
16 8 1.1793 -7.1368 -2.3876
17 6 -0.3194 -8.8130 -1.6706
18 8 -0.4327 -9.0675 -3.0722
19 6 -1.2675 -10.0707 -3.4517
20 6 -1.4320 -10.3807 -4.7981
21 6 -2.2940 -11.4111 -5.1359
22 6 -2.9571 -12.0928 -4.1324
23 7 -2.7789 -11.7739 -2.8656
24 6 -1.9636 -10.8038 -2.5018
25 6 0.2398 -7.9330 0.9398
26 6 -0.2242 -6.9166 1.9933
27 6 -0.7808 -5.6878 1.3028
28 8 0.2700 -4.7468 1.1265
29 1 -0.4851 0.8400 -0.0004
30 1 0.3556 -2.3880 -0.0002
31 1 2.6847 -3.7145 0.8905
32 1 2.6848 -3.7145 -0.8894
33 1 2.3548 -6.2817 0.9512
34 1 2.5663 -6.1586 -0.8117
35 1 0.0488 -9.7070 -1.1672
36 1 -1.2976 -8.5471 -1.2698
37 1 -0.9011 -9.8307 -5.5612
38 1 -2.4457 -11.6793 -6.1711
39 1 -3.6308 -12.8967 -4.3898
40 1 -1.8398 -10.5744 -1.4537
41 1 0.9366 -8.6332 1.4006
42 1 -0.6248 -8.4825 0.5675
43 1 0.6214 -6.6299 2.6185
44 1 -0.9989 -7.3659 2.6147
45 1 -1.5661 -5.2475 1.9172
46 1 -1.1876 -5.9674 0.3311
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001201648771.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:35:16
Heat of formation + Delta-G solvation = -73.330897 kcal
Electronic energy + Delta-G solvation = -28884.688685 eV
Core-core repulsion = 24775.055084 eV
Total energy + Delta-G solvation = -4109.633600 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.01837 -41.38824 -39.90509 -38.83775 -36.98083 -36.28502 -34.36482 -33.44072
-32.68461 -31.69734 -30.85906 -29.35639 -27.57718 -26.59268 -24.89261 -24.44464
-23.78246 -22.85080 -22.32291 -20.36775 -19.57559 -19.27533 -18.56529 -17.86911
-17.77843 -17.60391 -17.41494 -17.31737 -16.67511 -16.48632 -15.83812 -15.75242
-15.36393 -15.15874 -14.95802 -14.80922 -14.68833 -14.41480 -14.18510 -13.95064
-13.78239 -13.61705 -13.32000 -13.16857 -13.09098 -12.73986 -12.67080 -12.54555
-12.32771 -12.17928 -12.03648 -11.84109 -11.49285 -11.03510 -10.97484 -10.72868
-10.57996 -10.46825 -9.75346 -9.53227 -9.02478 -7.94954 -5.24892 0.11024
0.24405 1.28922 1.37088 1.45735 1.50489 1.56363 2.30675 2.55701
2.70996 2.79290 3.18379 3.38110 3.50020 3.59843 3.65537 3.79834
3.87309 3.93327 3.96850 3.98237 4.04976 4.08595 4.11162 4.26721
4.35805 4.42052 4.43877 4.51047 4.60611 4.66740 4.71097 4.83644
4.87115 4.95654 5.07423 5.12865 5.13224 5.18347 5.40810 5.45996
5.52724 6.01621 6.17769 6.25418 6.73646 6.92731 6.93845 7.31662
8.06103 8.31279 9.28785
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.017959 B = 0.002288 C = 0.002166
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1558.755210 B =12237.156315 C =12923.790660
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.971 5.971
2 C -0.079 4.079
3 Si 0.980 3.020
4 H -0.278 1.278
5 H -0.294 1.294
6 H -0.274 1.274
7 C -0.249 4.249
8 H 0.078 0.922
9 N -0.740 5.740
10 C 0.162 3.838
11 C 0.105 3.895
12 H 0.018 0.982
13 C 0.095 3.905
14 N -0.601 5.601
15 C 0.502 3.498
16 O -0.568 6.568
17 C 0.041 3.959
18 O -0.314 6.314
19 C 0.062 3.938
20 C -0.123 4.123
21 C -0.123 4.123
22 C 0.053 3.947
23 N -0.474 5.474
24 C 0.011 3.989
25 C 0.094 3.906
26 C -0.157 4.157
27 C 0.061 3.939
28 O -0.396 6.396
29 H 0.251 0.749
30 H 0.374 0.626
31 H 0.035 0.965
32 H 0.033 0.967
33 H 0.110 0.890
34 H 0.080 0.920
35 H 0.134 0.866
36 H 0.123 0.877
37 H 0.145 0.855
38 H 0.174 0.826
39 H 0.185 0.815
40 H 0.181 0.819
41 H 0.104 0.896
42 H 0.113 0.887
43 H 0.076 0.924
44 H 0.124 0.876
45 H 0.094 0.906
46 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.240 -30.771 -0.892 31.227
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.622 5.622
2 C -0.271 4.271
3 Si 0.808 3.192
4 H -0.204 1.204
5 H -0.220 1.220
6 H -0.200 1.200
7 C -0.381 4.381
8 H 0.096 0.904
9 N -0.383 5.383
10 C 0.035 3.965
11 C 0.044 3.956
12 H 0.035 0.965
13 C -0.029 4.029
14 N -0.334 5.334
15 C 0.290 3.710
16 O -0.446 6.446
17 C -0.036 4.036
18 O -0.226 6.226
19 C 0.015 3.985
20 C -0.150 4.150
21 C -0.142 4.142
22 C -0.104 4.104
23 N -0.183 5.183
24 C -0.147 4.147
25 C -0.026 4.026
26 C -0.194 4.194
27 C -0.015 4.015
28 O -0.315 6.315
29 H 0.060 0.940
30 H 0.205 0.795
31 H 0.053 0.947
32 H 0.051 0.949
33 H 0.128 0.872
34 H 0.099 0.901
35 H 0.152 0.848
36 H 0.140 0.860
37 H 0.163 0.837
38 H 0.191 0.809
39 H 0.202 0.798
40 H 0.198 0.802
41 H 0.122 0.878
42 H 0.131 0.869
43 H 0.095 0.905
44 H 0.142 0.858
45 H 0.112 0.888
46 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -5.076 -30.597 -0.694 31.023
hybrid contribution 0.420 1.705 -0.906 1.975
sum -4.656 -28.893 -1.600 29.309
Atomic orbital electron populations
1.69846 1.06792 1.26172 1.59368 1.25671 0.96497 1.01393 1.03560
0.85116 0.77126 0.78626 0.78296 1.20365 1.22002 1.20027 1.19655
0.91593 0.85264 1.41540 0.90391 1.42404 1.05628 1.00907 1.89316
1.20768 0.93160 0.84135 0.98487 1.21874 0.91816 0.94643 0.87240
0.96450 1.22151 0.92014 0.84615 1.04130 1.47950 1.44823 1.34294
1.06352 1.20787 0.82619 0.84586 0.83019 1.90770 1.52567 1.58544
1.42749 1.22806 1.00800 0.98485 0.81507 1.86151 1.61120 1.50024
1.25298 1.20338 0.92662 0.89834 0.95695 1.21316 1.00527 0.99343
0.93813 1.22380 0.94729 0.94019 1.03055 1.23229 0.99531 1.00332
0.87355 1.67577 1.15133 1.14233 1.21400 1.23238 0.96294 0.94559
1.00564 1.22501 0.98863 0.94928 0.86300 1.22440 1.03524 0.95059
0.98427 1.22447 0.89143 0.90110 0.99776 1.86374 1.45779 1.56800
1.42554 0.93989 0.79477 0.94696 0.94931 0.87229 0.90137 0.84839
0.85996 0.83714 0.80869 0.79777 0.80183 0.87797 0.86894 0.90491
0.85754 0.88782 0.93978
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -62.53 13.06 21.65 0.28 -62.25 16
2 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16
3 Si 0.98 48.00 29.55 68.60 2.03 50.03 16
4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16
6 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16
7 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16
8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16
9 N -0.74 -41.25 5.49 -343.46 -1.88 -43.14 16
10 C 0.16 7.11 5.95 86.38 0.51 7.63 16
11 C 0.10 3.82 2.73 31.21 0.09 3.90 16
12 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
13 C 0.10 2.59 4.86 87.25 0.42 3.01 16
14 N -0.60 -12.56 2.19 -817.98 -1.79 -14.35 16
15 C 0.50 12.56 7.71 87.66 0.68 13.24 16
16 O -0.57 -20.97 15.93 15.98 0.25 -20.72 16
17 C 0.04 0.65 3.57 71.23 0.25 0.90 16
18 O -0.31 -7.17 9.68 -73.59 -0.71 -7.89 16
19 C 0.06 1.16 6.71 22.60 0.15 1.32 16
20 C -0.12 -2.06 10.13 22.56 0.23 -1.83 16
21 C -0.12 -1.41 10.11 22.34 0.23 -1.18 16
22 C 0.05 0.67 11.18 84.69 0.95 1.61 16
23 N -0.47 -8.00 10.35 -195.44 -2.02 -10.03 16
24 C 0.01 0.17 10.22 84.81 0.87 1.03 16
25 C 0.09 0.97 6.00 86.38 0.52 1.49 16
26 C -0.16 -2.11 5.79 30.31 0.18 -1.93 16
27 C 0.06 1.46 6.37 71.50 0.46 1.91 16
28 O -0.40 -13.98 9.19 -117.87 -1.08 -15.06 16
29 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16
30 H 0.37 22.45 7.53 -92.71 -0.70 21.76 16
31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
32 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16
33 H 0.11 2.49 8.11 -2.39 -0.02 2.47 16
34 H 0.08 2.45 7.27 -2.39 -0.02 2.43 16
35 H 0.13 1.02 7.57 -2.39 -0.02 1.00 16
36 H 0.12 1.22 6.96 -2.38 -0.02 1.20 16
37 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16
38 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16
39 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16
40 H 0.18 1.60 6.32 -2.91 -0.02 1.58 16
41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16
42 H 0.11 0.44 5.88 -2.39 -0.01 0.42 16
43 H 0.08 1.23 8.01 -2.39 -0.02 1.21 16
44 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16
45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16
46 H 0.04 1.01 7.40 -2.39 -0.02 1.00 16
Total: -1.00 -87.38 377.79 2.20 -85.18
By element:
Atomic # 1 Polarization: 25.09 SS G_CDS: 0.30 Total: 25.39 kcal
Atomic # 6 Polarization: 6.00 SS G_CDS: 6.83 Total: 12.83 kcal
Atomic # 7 Polarization: -124.35 SS G_CDS: -5.42 Total: -129.76 kcal
Atomic # 8 Polarization: -42.12 SS G_CDS: -1.54 Total: -43.66 kcal
Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal
Total: -87.38 2.20 -85.18 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001201648771.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.848 kcal
(2) G-P(sol) polarization free energy of solvation -87.378 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.529 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.331 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds