Wall clock time and date at job start Tue Mar 31 2020 18:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00402 * 2 1 4 4 H 1.48501 * 109.46818 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.47323 * 29.99562 * 3 2 1 6 6 H 1.48499 * 109.47500 * 150.00087 * 3 2 1 7 7 C 1.38812 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00098 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00304 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00143 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47092 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46994 * 305.00292 * 11 10 9 13 13 C 1.54809 * 109.46998 * 185.00605 * 11 10 9 14 14 N 1.45122 * 109.53858 * 172.11199 * 13 11 10 15 15 C 1.34778 * 118.75719 * 269.28734 * 14 13 11 16 16 O 1.21277 * 119.99844 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00068 * 180.02562 * 15 14 13 18 18 O 1.42891 * 109.47030 * 180.02562 * 17 15 14 19 19 C 1.35909 * 116.99935 * 180.02562 * 18 17 15 20 20 C 1.39144 * 120.47552 * 179.97438 * 19 18 17 21 21 C 1.38539 * 118.37344 * 180.02562 * 20 19 18 22 22 C 1.38249 * 119.22459 * 359.97438 * 21 20 19 23 23 N 1.31846 * 120.88625 * 0.02562 * 22 21 20 24 24 C 1.31848 * 121.78048 * 359.70233 * 23 22 21 25 25 C 1.47506 * 122.48592 * 89.28981 * 14 13 11 26 26 C 1.53577 * 111.02505 * 318.37319 * 25 14 13 27 27 C 1.51531 * 109.58276 * 320.02015 * 26 25 14 28 28 O 1.38014 * 109.46837 * 64.99856 * 11 10 9 29 29 H 0.97005 * 119.99116 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99617 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47194 * 60.00453 * 10 9 7 32 32 H 1.09001 * 109.47272 * 300.00310 * 10 9 7 33 33 H 1.08997 * 109.45897 * 292.13703 * 13 11 10 34 34 H 1.09002 * 109.45921 * 52.09165 * 13 11 10 35 35 H 1.09005 * 109.47105 * 300.00231 * 17 15 14 36 36 H 1.08996 * 109.47062 * 60.00031 * 17 15 14 37 37 H 1.08001 * 120.81084 * 0.02562 * 20 19 18 38 38 H 1.08001 * 120.38379 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.55885 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.65970 * 180.29017 * 24 23 22 41 41 H 1.08995 * 109.16865 * 197.97056 * 25 14 13 42 42 H 1.08998 * 109.16748 * 78.76654 * 25 14 13 43 43 H 1.09004 * 109.45206 * 199.98247 * 26 25 14 44 44 H 1.09002 * 109.45314 * 80.05458 * 26 25 14 45 45 H 1.09003 * 109.58958 * 331.61962 * 27 26 25 46 46 H 1.09003 * 109.59014 * 211.18347 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3796 -1.2023 0.0000 10 6 4.1119 -2.4711 0.0011 11 6 5.6162 -2.1916 0.0009 12 1 5.8657 -1.5464 -0.8415 13 6 6.3891 -3.5270 -0.1253 14 7 7.8020 -3.2542 -0.3130 15 6 8.2769 -3.1282 -1.5681 16 8 7.5271 -3.2424 -2.5144 17 6 9.7396 -2.8454 -1.7954 18 8 9.9949 -2.7560 -3.1985 19 6 11.2754 -2.5036 -3.5777 20 6 11.6052 -2.4024 -4.9257 21 6 12.9239 -2.1446 -5.2633 22 6 13.8615 -1.9970 -4.2581 23 7 13.5158 -2.0990 -2.9899 24 6 12.2712 -2.3381 -2.6264 25 6 8.7381 -3.1095 0.8178 26 6 8.1069 -2.2922 1.9545 27 6 7.3112 -1.1418 1.3717 28 8 5.9680 -1.5658 1.1796 29 1 -0.4849 0.8402 -0.0004 30 1 3.8646 -0.3623 -0.0004 31 1 3.8483 -3.0436 -0.8882 32 1 3.8489 -3.0417 0.8918 33 1 6.2501 -4.1142 0.7824 34 1 6.0104 -4.0863 -0.9808 35 1 10.0060 -1.9028 -1.3171 36 1 10.3362 -3.6511 -1.3678 37 1 10.8516 -2.5218 -5.6901 38 1 13.2158 -2.0591 -6.2996 39 1 14.8911 -1.7964 -4.5152 40 1 12.0253 -2.4103 -1.5773 41 1 9.6408 -2.6053 0.4729 42 1 9.0025 -4.0984 1.1922 43 1 8.8932 -1.8998 2.5994 44 1 7.4452 -2.9325 2.5379 45 1 7.7418 -0.8475 0.4146 46 1 7.3328 -0.2968 2.0599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201648778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:20 Heat of formation + Delta-G solvation = -42.783175 kcal Electronic energy + Delta-G solvation = -28994.251024 eV Core-core repulsion = 24885.942073 eV Total energy + Delta-G solvation = -4108.308952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29593 -40.63216 -39.00691 -38.05907 -35.91920 -34.81597 -33.04180 -32.86711 -31.20931 -31.05607 -30.03473 -28.39832 -26.78195 -25.27285 -24.10878 -23.43360 -22.38434 -21.83956 -21.11427 -19.56323 -18.95482 -17.83985 -17.64881 -17.25112 -16.99403 -16.72951 -16.62707 -16.37588 -15.75713 -15.01760 -14.91036 -14.78302 -14.35614 -14.24870 -13.93744 -13.69473 -13.64118 -13.48607 -13.16517 -12.88368 -12.68326 -12.65103 -12.53103 -12.25609 -11.95714 -11.90871 -11.57346 -11.26174 -10.98409 -10.82744 -10.44775 -10.19989 -10.15595 -10.04623 -9.87261 -9.61708 -9.53792 -8.96490 -8.85322 -8.80371 -7.16507 -5.70818 -3.05402 0.62058 0.81289 2.02401 2.19627 2.96852 3.32245 3.43987 3.48500 3.50347 3.74764 3.85900 3.98401 4.17039 4.31098 4.38903 4.42489 4.43784 4.51421 4.59785 4.66251 4.71875 4.89188 4.99068 5.04119 5.10877 5.14550 5.24599 5.29529 5.41372 5.47438 5.59163 5.63773 5.64421 5.73787 5.79913 5.90981 5.95605 5.99226 6.24392 6.54757 6.64643 6.65731 6.90412 7.45739 7.77765 7.80144 8.04711 8.48097 9.27522 10.00080 10.20546 11.47588 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.002511 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.992912 B =11149.221634 C =11776.539527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.171 3.829 11 C 0.083 3.917 12 H 0.052 0.948 13 C 0.083 3.917 14 N -0.606 5.606 15 C 0.509 3.491 16 O -0.504 6.504 17 C 0.039 3.961 18 O -0.282 6.282 19 C 0.081 3.919 20 C -0.104 4.104 21 C -0.130 4.130 22 C 0.058 3.942 23 N -0.450 5.450 24 C 0.014 3.986 25 C 0.101 3.899 26 C -0.167 4.167 27 C 0.071 3.929 28 O -0.370 6.370 29 H 0.259 0.741 30 H 0.364 0.636 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.046 0.954 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.469 -7.320 -2.392 32.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.043 3.957 11 C 0.023 3.977 12 H 0.070 0.930 13 C -0.040 4.040 14 N -0.341 5.341 15 C 0.294 3.706 16 O -0.377 6.377 17 C -0.040 4.040 18 O -0.193 6.193 19 C 0.033 3.967 20 C -0.131 4.131 21 C -0.149 4.149 22 C -0.099 4.099 23 N -0.159 5.159 24 C -0.144 4.144 25 C -0.021 4.021 26 C -0.205 4.205 27 C -0.006 4.006 28 O -0.288 6.288 29 H 0.069 0.931 30 H 0.196 0.804 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 31.125 -7.394 -2.233 32.069 hybrid contribution 0.357 1.092 -0.542 1.271 sum 31.482 -6.302 -2.776 32.227 Atomic orbital electron populations 1.69708 1.05066 1.25745 1.57827 1.24647 0.95237 0.97198 1.02116 0.86541 0.79429 0.84932 0.77737 1.21192 1.21776 1.20058 1.19056 0.80512 0.94781 1.42720 0.89157 1.42566 1.03940 1.02032 1.91017 1.20590 0.85453 0.90192 0.99481 1.22361 0.96362 0.91877 0.87082 0.92994 1.22464 0.78531 0.99040 1.03982 1.47852 1.09657 1.71495 1.05127 1.20001 0.88986 0.78078 0.83489 1.90806 1.58509 1.47633 1.40772 1.22644 0.95941 1.03482 0.81905 1.86197 1.23775 1.85699 1.23588 1.20143 0.84490 0.97121 0.94943 1.21031 0.97432 1.00842 0.93779 1.22068 0.92567 0.98710 1.01592 1.22700 1.00391 0.99157 0.87697 1.67526 1.18385 1.09668 1.20334 1.22906 0.88683 1.03279 0.99573 1.22085 0.91628 1.01016 0.87352 1.22509 1.01179 0.99003 0.97819 1.22150 0.82871 0.95714 0.99838 1.86442 1.26941 1.76756 1.38706 0.93132 0.80367 0.93772 0.94572 0.89237 0.88384 0.88729 0.88664 0.83616 0.83822 0.82371 0.82610 0.90294 0.90744 0.89370 0.89518 0.93606 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.14 13.97 55.49 0.78 -29.37 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 23.02 27.73 -169.99 -4.71 18.30 16 4 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.27 -6.82 6.52 56.52 0.37 -6.45 16 7 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 8 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 9 N -0.75 -18.86 5.34 -59.91 -0.32 -19.18 16 10 C 0.17 3.43 5.92 -4.05 -0.02 3.41 16 11 C 0.08 1.36 2.68 -25.78 -0.07 1.29 16 12 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 13 C 0.08 1.06 4.86 -3.83 -0.02 1.04 16 14 N -0.61 -6.31 2.19 -172.47 -0.38 -6.69 16 15 C 0.51 6.14 7.71 -10.99 -0.08 6.06 16 16 O -0.50 -8.55 15.93 -14.35 -0.23 -8.78 16 17 C 0.04 0.32 3.57 36.01 0.13 0.45 16 18 O -0.28 -3.14 9.68 -39.37 -0.38 -3.52 16 19 C 0.08 0.76 6.71 -39.07 -0.26 0.50 16 20 C -0.10 -0.86 10.13 -39.13 -0.40 -1.26 16 21 C -0.13 -0.82 10.11 -39.47 -0.40 -1.22 16 22 C 0.06 0.42 11.18 -17.54 -0.20 0.22 16 23 N -0.45 -4.12 10.36 -13.13 -0.14 -4.26 16 24 C 0.01 0.11 10.22 -17.37 -0.18 -0.06 16 25 C 0.10 0.65 6.00 -3.19 -0.02 0.63 16 26 C -0.17 -1.24 5.78 -27.17 -0.16 -1.40 16 27 C 0.07 0.79 6.37 36.41 0.23 1.03 16 28 O -0.37 -5.91 9.38 -26.53 -0.25 -6.16 16 29 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 30 H 0.36 9.11 5.52 -40.82 -0.23 8.89 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 34 H 0.10 1.36 7.27 -51.93 -0.38 0.98 16 35 H 0.09 0.56 6.94 -51.93 -0.36 0.20 16 36 H 0.10 0.50 7.59 -51.93 -0.39 0.11 16 37 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 39 H 0.16 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.16 0.90 6.32 -52.49 -0.33 0.56 16 41 H 0.08 0.31 5.88 -51.93 -0.31 0.00 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.74 8.01 -51.93 -0.42 0.32 16 45 H 0.05 0.51 7.40 -51.93 -0.38 0.12 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 374.96 15.07 5.65 5.65 Total: -1.00 -38.43 374.96 -8.29 -46.72 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.61 Total: 3.81 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.70 Total: 3.46 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.06 Total: -59.49 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.86 Total: -18.46 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.43 -8.29 -46.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201648778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.938 kcal (2) G-P(sol) polarization free energy of solvation -38.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds