Wall clock time and date at job start Tue Mar 31 2020 18:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00402 * 2 1 4 4 H 1.48501 * 109.46818 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.47323 * 29.99562 * 3 2 1 6 6 H 1.48499 * 109.47500 * 150.00087 * 3 2 1 7 7 C 1.38812 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00098 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00304 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00143 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47092 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46994 * 305.00292 * 11 10 9 13 13 C 1.54809 * 109.46998 * 185.00605 * 11 10 9 14 14 N 1.45122 * 109.53858 * 172.11199 * 13 11 10 15 15 C 1.34778 * 118.75719 * 269.28734 * 14 13 11 16 16 O 1.21277 * 119.99844 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00068 * 180.02562 * 15 14 13 18 18 O 1.42891 * 109.47030 * 180.02562 * 17 15 14 19 19 C 1.35909 * 116.99935 * 180.02562 * 18 17 15 20 20 C 1.39144 * 120.47552 * 179.97438 * 19 18 17 21 21 C 1.38539 * 118.37344 * 180.02562 * 20 19 18 22 22 C 1.38249 * 119.22459 * 359.97438 * 21 20 19 23 23 N 1.31846 * 120.88625 * 0.02562 * 22 21 20 24 24 C 1.31848 * 121.78048 * 359.70233 * 23 22 21 25 25 C 1.47506 * 122.48592 * 89.28981 * 14 13 11 26 26 C 1.53577 * 111.02505 * 318.37319 * 25 14 13 27 27 C 1.51531 * 109.58276 * 320.02015 * 26 25 14 28 28 O 1.38014 * 109.46837 * 64.99856 * 11 10 9 29 29 H 0.97005 * 119.99116 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99617 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47194 * 60.00453 * 10 9 7 32 32 H 1.09001 * 109.47272 * 300.00310 * 10 9 7 33 33 H 1.08997 * 109.45897 * 292.13703 * 13 11 10 34 34 H 1.09002 * 109.45921 * 52.09165 * 13 11 10 35 35 H 1.09005 * 109.47105 * 300.00231 * 17 15 14 36 36 H 1.08996 * 109.47062 * 60.00031 * 17 15 14 37 37 H 1.08001 * 120.81084 * 0.02562 * 20 19 18 38 38 H 1.08001 * 120.38379 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.55885 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.65970 * 180.29017 * 24 23 22 41 41 H 1.08995 * 109.16865 * 197.97056 * 25 14 13 42 42 H 1.08998 * 109.16748 * 78.76654 * 25 14 13 43 43 H 1.09004 * 109.45206 * 199.98247 * 26 25 14 44 44 H 1.09002 * 109.45314 * 80.05458 * 26 25 14 45 45 H 1.09003 * 109.58958 * 331.61962 * 27 26 25 46 46 H 1.09003 * 109.59014 * 211.18347 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3796 -1.2023 0.0000 10 6 4.1119 -2.4711 0.0011 11 6 5.6162 -2.1916 0.0009 12 1 5.8657 -1.5464 -0.8415 13 6 6.3891 -3.5270 -0.1253 14 7 7.8020 -3.2542 -0.3130 15 6 8.2769 -3.1282 -1.5681 16 8 7.5271 -3.2424 -2.5144 17 6 9.7396 -2.8454 -1.7954 18 8 9.9949 -2.7560 -3.1985 19 6 11.2754 -2.5036 -3.5777 20 6 11.6052 -2.4024 -4.9257 21 6 12.9239 -2.1446 -5.2633 22 6 13.8615 -1.9970 -4.2581 23 7 13.5158 -2.0990 -2.9899 24 6 12.2712 -2.3381 -2.6264 25 6 8.7381 -3.1095 0.8178 26 6 8.1069 -2.2922 1.9545 27 6 7.3112 -1.1418 1.3717 28 8 5.9680 -1.5658 1.1796 29 1 -0.4849 0.8402 -0.0004 30 1 3.8646 -0.3623 -0.0004 31 1 3.8483 -3.0436 -0.8882 32 1 3.8489 -3.0417 0.8918 33 1 6.2501 -4.1142 0.7824 34 1 6.0104 -4.0863 -0.9808 35 1 10.0060 -1.9028 -1.3171 36 1 10.3362 -3.6511 -1.3678 37 1 10.8516 -2.5218 -5.6901 38 1 13.2158 -2.0591 -6.2996 39 1 14.8911 -1.7964 -4.5152 40 1 12.0253 -2.4103 -1.5773 41 1 9.6408 -2.6053 0.4729 42 1 9.0025 -4.0984 1.1922 43 1 8.8932 -1.8998 2.5994 44 1 7.4452 -2.9325 2.5379 45 1 7.7418 -0.8475 0.4146 46 1 7.3328 -0.2968 2.0599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201648778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:19 Heat of formation + Delta-G solvation = -70.718438 kcal Electronic energy + Delta-G solvation = -28995.462388 eV Core-core repulsion = 24885.942073 eV Total energy + Delta-G solvation = -4109.520316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03008 -41.40244 -39.93556 -38.84988 -37.08646 -36.37925 -34.39752 -33.44893 -33.03108 -31.71664 -30.94521 -29.55940 -27.60971 -26.62611 -24.79688 -24.30981 -23.69917 -22.90319 -22.39949 -20.36730 -19.83054 -19.57902 -18.58011 -17.87203 -17.80303 -17.61628 -17.41683 -17.33259 -16.75677 -16.40993 -15.96050 -15.81096 -15.36582 -15.20130 -14.94125 -14.88831 -14.68963 -14.42630 -14.19801 -14.01457 -13.89753 -13.65398 -13.57661 -13.29281 -13.13364 -12.88323 -12.65608 -12.54527 -12.38303 -12.15854 -12.03576 -11.84873 -11.51786 -11.05976 -11.03252 -10.73491 -10.61912 -10.47409 -9.77175 -9.53753 -9.34209 -8.05644 -5.38845 0.10453 0.23720 1.28952 1.34169 1.35797 1.37213 1.45503 2.29992 2.45654 2.66125 2.78657 3.17641 3.25991 3.43463 3.49588 3.64793 3.77774 3.84832 3.92689 3.94453 3.96889 4.01269 4.02746 4.08369 4.21538 4.25769 4.40007 4.43278 4.47793 4.60006 4.66003 4.70480 4.82710 4.85561 4.94888 5.04146 5.11109 5.12786 5.17048 5.40259 5.52014 5.70757 6.00868 6.16858 6.18105 6.67963 6.92142 6.93396 7.03524 7.79212 7.99044 9.15707 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.002511 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.992912 B =11149.221634 C =11776.539527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.063 4.063 3 Si 0.955 3.045 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.235 4.235 8 H 0.060 0.940 9 N -0.754 5.754 10 C 0.164 3.836 11 C 0.101 3.899 12 H 0.027 0.973 13 C 0.094 3.906 14 N -0.601 5.601 15 C 0.502 3.498 16 O -0.567 6.567 17 C 0.041 3.959 18 O -0.314 6.314 19 C 0.063 3.937 20 C -0.124 4.124 21 C -0.123 4.123 22 C 0.053 3.947 23 N -0.474 5.474 24 C 0.011 3.989 25 C 0.094 3.906 26 C -0.158 4.158 27 C 0.059 3.941 28 O -0.398 6.398 29 H 0.259 0.741 30 H 0.365 0.635 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.173 0.827 39 H 0.185 0.815 40 H 0.182 0.818 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.940 -6.890 -1.246 36.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.255 4.255 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.180 1.180 7 C -0.366 4.366 8 H 0.078 0.922 9 N -0.400 5.400 10 C 0.037 3.963 11 C 0.040 3.960 12 H 0.045 0.955 13 C -0.031 4.031 14 N -0.334 5.334 15 C 0.290 3.710 16 O -0.445 6.445 17 C -0.037 4.037 18 O -0.226 6.226 19 C 0.015 3.985 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.105 4.105 23 N -0.183 5.183 24 C -0.146 4.146 25 C -0.027 4.027 26 C -0.196 4.196 27 C -0.017 4.017 28 O -0.317 6.317 29 H 0.068 0.932 30 H 0.198 0.802 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.191 0.809 39 H 0.202 0.798 40 H 0.199 0.801 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.142 0.858 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 35.677 -6.990 -1.043 36.370 hybrid contribution -0.998 0.894 -0.894 1.611 sum 34.679 -6.095 -1.937 35.264 Atomic orbital electron populations 1.69880 1.06931 1.26712 1.59658 1.25486 0.96190 1.01193 1.02614 0.85402 0.78670 0.79776 0.77954 1.20736 1.21572 1.18025 1.19065 0.82451 0.93731 1.41360 0.92187 1.42586 1.02570 1.03913 1.90884 1.20745 0.88165 0.88170 0.99174 1.21919 0.93990 0.93459 0.86597 0.95487 1.22145 0.80031 0.96764 1.04122 1.47947 1.08993 1.70374 1.06112 1.20776 0.90431 0.76708 0.83064 1.90777 1.60380 1.50572 1.42795 1.22814 0.93227 1.06228 0.81398 1.86150 1.24920 1.86329 1.25176 1.20323 0.84164 0.98347 0.95645 1.21317 0.98485 1.01368 0.93850 1.22378 0.91494 0.97289 1.03059 1.23221 1.01759 0.98136 0.87340 1.67584 1.18745 1.10600 1.21400 1.23244 0.88163 1.02666 1.00559 1.22502 0.91473 1.02957 0.85719 1.22445 1.01463 0.97411 0.98253 1.22496 0.81083 0.97720 1.00355 1.86364 1.30229 1.77168 1.37915 0.93232 0.80220 0.94194 0.94291 0.87209 0.90163 0.85825 0.84980 0.83737 0.80936 0.79832 0.80127 0.86861 0.88022 0.85764 0.90482 0.93637 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.03 13.97 21.65 0.30 -64.73 16 2 C -0.06 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.95 48.15 27.73 68.60 1.90 50.06 16 4 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.26 -11.93 6.52 99.48 0.65 -11.28 16 7 C -0.24 -14.25 10.47 84.03 0.88 -13.37 16 8 H 0.06 3.92 8.06 -2.91 -0.02 3.89 16 9 N -0.75 -38.55 5.34 -343.45 -1.83 -40.39 16 10 C 0.16 6.78 5.92 86.38 0.51 7.29 16 11 C 0.10 3.31 2.68 31.21 0.08 3.39 16 12 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 13 C 0.09 2.34 4.86 87.26 0.42 2.76 16 14 N -0.60 -11.23 2.19 -817.97 -1.79 -13.02 16 15 C 0.50 11.55 7.71 87.66 0.68 12.23 16 16 O -0.57 -19.86 15.93 16.02 0.26 -19.61 16 17 C 0.04 0.57 3.57 71.24 0.25 0.82 16 18 O -0.31 -6.70 9.68 -73.49 -0.71 -7.42 16 19 C 0.06 1.10 6.71 22.60 0.15 1.25 16 20 C -0.12 -1.94 10.13 22.56 0.23 -1.71 16 21 C -0.12 -1.31 10.11 22.34 0.23 -1.09 16 22 C 0.05 0.62 11.18 84.69 0.95 1.57 16 23 N -0.47 -7.52 10.36 -195.44 -2.02 -9.54 16 24 C 0.01 0.16 10.22 84.80 0.87 1.02 16 25 C 0.09 0.77 6.00 86.38 0.52 1.29 16 26 C -0.16 -1.69 5.78 30.31 0.18 -1.51 16 27 C 0.06 1.17 6.37 71.50 0.46 1.62 16 28 O -0.40 -12.27 9.38 -117.86 -1.11 -13.37 16 29 H 0.26 16.25 8.31 -92.70 -0.77 15.48 16 30 H 0.36 18.25 5.52 -92.71 -0.51 17.74 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.11 2.27 8.11 -2.39 -0.02 2.25 16 34 H 0.08 2.30 7.27 -2.39 -0.02 2.29 16 35 H 0.12 0.96 6.94 -2.38 -0.02 0.95 16 36 H 0.13 0.82 7.59 -2.39 -0.02 0.80 16 37 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 39 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.18 1.35 6.32 -2.91 -0.02 1.34 16 41 H 0.11 0.20 5.88 -2.39 -0.01 0.19 16 42 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 44 H 0.08 1.04 8.01 -2.39 -0.02 1.02 16 45 H 0.05 0.90 7.40 -2.39 -0.02 0.88 16 46 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -88.90 374.96 2.29 -86.61 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.43 Total: 19.29 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.86 Total: 12.12 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -5.35 Total: -127.68 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.56 Total: -40.40 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.90 Total: 50.06 kcal Total: -88.90 2.29 -86.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201648778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.893 kcal (2) G-P(sol) polarization free energy of solvation -88.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds