Wall clock time and date at job start Tue Mar 31 2020 19:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48499 * 109.47217 * 239.99292 * 3 2 1 5 5 H 1.48498 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47072 * 119.99953 * 3 2 1 7 7 C 1.38814 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99824 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99708 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46786 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47235 * 304.99562 * 11 10 9 13 13 C 1.54806 * 109.46632 * 185.00337 * 11 10 9 14 14 N 1.45121 * 109.52966 * 172.10727 * 13 11 10 15 15 C 1.34780 * 118.75773 * 269.29155 * 14 13 11 16 16 O 1.21601 * 120.00052 * 173.90153 * 15 14 13 17 17 C 1.47396 * 119.99588 * 353.62164 * 15 14 13 18 18 C 1.47106 * 128.56641 * 19.59970 * 17 15 14 19 19 N 1.30017 * 105.32831 * 179.97438 * 18 17 15 20 20 O 1.20651 * 112.30143 * 0.02562 * 19 18 17 21 21 C 1.33502 * 113.15859 * 359.71357 * 20 19 18 22 22 C 1.50700 * 126.83038 * 180.31306 * 21 20 19 23 23 C 1.53002 * 117.49999 * 8.91084 * 22 21 20 24 24 C 1.53005 * 117.49680 * 300.25436 * 22 21 20 25 25 C 1.47510 * 122.48479 * 89.56665 * 14 13 11 26 26 C 1.53946 * 110.82235 * 317.97598 * 25 14 13 27 27 C 1.51534 * 109.72632 * 320.30604 * 26 25 14 28 28 O 1.38013 * 109.46920 * 64.98945 * 11 10 9 29 29 H 0.97002 * 119.99384 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00346 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.46968 * 60.00021 * 10 9 7 32 32 H 1.08992 * 109.47275 * 299.99900 * 10 9 7 33 33 H 1.08993 * 109.46681 * 52.08522 * 13 11 10 34 34 H 1.09002 * 109.45785 * 292.12009 * 13 11 10 35 35 H 1.07995 * 127.33262 * 0.02562 * 18 17 15 36 36 H 1.08998 * 115.55050 * 154.59126 * 22 21 20 37 37 H 1.09001 * 117.50019 * 0.02562 * 23 22 21 38 38 H 1.09002 * 117.49877 * 145.02343 * 23 22 21 39 39 H 1.08997 * 117.50108 * 214.98301 * 24 22 21 40 40 H 1.09004 * 117.49787 * 0.02562 * 24 22 21 41 41 H 1.09000 * 109.16882 * 78.49798 * 25 14 13 42 42 H 1.09010 * 109.16578 * 197.69696 * 25 14 13 43 43 H 1.09003 * 109.45902 * 200.17991 * 26 25 14 44 44 H 1.08998 * 109.27991 * 80.32404 * 26 25 14 45 45 H 1.09001 * 109.58904 * 331.51159 * 27 26 25 46 46 H 1.09005 * 109.58869 * 211.08038 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3799 -4.7126 0.8433 13 6 1.8335 -6.1567 0.1285 14 7 0.8904 -7.2435 0.3167 15 6 0.5434 -7.5908 1.5719 16 8 -0.3262 -8.4210 1.7546 17 6 1.2221 -6.9688 2.7229 18 6 1.9900 -5.7148 2.7669 19 7 2.3856 -5.5970 3.9998 20 8 2.0143 -6.5147 4.6894 21 6 1.2889 -7.4141 4.0206 22 6 0.6692 -8.6697 4.5779 23 6 0.7008 -8.8595 6.0957 24 6 1.6085 -9.7054 5.1992 25 6 0.3019 -7.9864 -0.8136 26 6 -0.0944 -7.0280 -1.9513 27 6 -0.6928 -5.7632 -1.3695 28 8 0.3461 -4.8120 -1.1777 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6846 -3.7145 0.8905 32 1 2.6846 -3.7146 -0.8894 33 1 2.5070 -6.1080 0.9841 34 1 2.4116 -6.3306 -0.7791 35 1 2.1831 -5.0361 1.9493 36 1 -0.2048 -9.0402 4.0423 37 1 1.1694 -8.0761 6.6913 38 1 -0.1524 -9.3553 6.5588 39 1 1.3521 -10.7572 5.0729 40 1 2.6746 -9.4784 5.2053 41 1 1.0296 -8.7077 -1.1855 42 1 -0.5846 -8.5191 -0.4690 43 1 -0.8274 -7.5131 -2.5960 44 1 0.7913 -6.7758 -2.5343 45 1 -1.1634 -5.9883 -0.4124 46 1 -1.4351 -5.3598 -2.0582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201765710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:46 Heat of formation + Delta-G solvation = 53.840498 kcal Electronic energy + Delta-G solvation = -30231.225069 eV Core-core repulsion = 26127.106035 eV Total energy + Delta-G solvation = -4104.119035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.05927 -40.67267 -38.64493 -37.64102 -35.46602 -35.24347 -33.97265 -32.76888 -31.73768 -31.02349 -28.99246 -27.03431 -25.64465 -24.44944 -24.25377 -22.83911 -22.72150 -21.73052 -21.32994 -20.95561 -19.22169 -17.92756 -17.76063 -17.29940 -17.14032 -16.63512 -16.58426 -15.94378 -15.61041 -15.26594 -14.84921 -14.46992 -14.22432 -14.13836 -13.60880 -13.55659 -13.15909 -13.13220 -12.60602 -12.47618 -12.43967 -12.15607 -11.95880 -11.80552 -11.66075 -11.46214 -11.34820 -11.00601 -10.82840 -10.80063 -10.78779 -10.53331 -10.35026 -10.13198 -10.02819 -9.74128 -9.51552 -9.39282 -8.89495 -8.66996 -6.93899 -5.75067 -3.04772 0.85577 1.71064 2.51205 2.80393 2.90314 3.45592 3.47987 3.49694 3.50838 3.83048 3.97637 4.10649 4.32593 4.43446 4.51991 4.55233 4.60599 4.70511 4.79856 4.86921 5.02936 5.04608 5.13438 5.25643 5.26062 5.27287 5.39652 5.50574 5.53184 5.57733 5.61325 5.66421 5.68438 5.71334 5.77822 5.79736 5.95373 6.04931 6.19864 6.30201 6.39364 6.61955 7.08814 7.68742 7.86112 7.90980 8.09123 8.42227 9.54345 10.09414 10.45126 11.47321 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.003673 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.516547 B = 7621.726298 C = 9450.488426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.723 5.723 10 C 0.161 3.839 11 C 0.079 3.921 12 H 0.053 0.947 13 C 0.047 3.953 14 N -0.598 5.598 15 C 0.600 3.400 16 O -0.536 6.536 17 C -0.259 4.259 18 C 0.009 3.991 19 N -0.344 5.344 20 O 0.095 5.905 21 C 0.075 3.925 22 C -0.091 4.091 23 C -0.164 4.164 24 C -0.158 4.158 25 C 0.112 3.888 26 C -0.165 4.165 27 C 0.072 3.928 28 O -0.362 6.362 29 H 0.256 0.744 30 H 0.388 0.612 31 H 0.030 0.970 32 H 0.035 0.965 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.219 0.781 36 H 0.153 0.847 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 -22.864 4.698 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.368 5.368 10 C 0.032 3.968 11 C 0.019 3.981 12 H 0.071 0.929 13 C -0.077 4.077 14 N -0.330 5.330 15 C 0.388 3.612 16 O -0.415 6.415 17 C -0.267 4.267 18 C -0.173 4.173 19 N -0.049 5.049 20 O 0.034 5.966 21 C 0.010 3.990 22 C -0.110 4.110 23 C -0.201 4.201 24 C -0.195 4.195 25 C -0.009 4.009 26 C -0.203 4.203 27 C -0.005 4.005 28 O -0.280 6.280 29 H 0.066 0.934 30 H 0.222 0.778 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.235 0.765 36 H 0.170 0.830 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.017 -22.149 5.305 22.865 hybrid contribution -0.240 0.540 -0.613 0.852 sum 1.776 -21.610 4.692 22.184 Atomic orbital electron populations 1.69665 1.05138 1.25785 1.57205 1.24746 0.95507 0.97701 1.02728 0.86261 0.78530 0.83477 0.77861 1.21219 1.21684 1.21209 1.19159 0.90984 0.84006 1.43361 0.91130 1.42195 1.06021 0.99290 1.89262 1.20699 0.92427 0.85047 0.98609 1.22456 0.93896 0.93646 0.88128 0.92934 1.23232 0.92624 0.87027 1.04790 1.47617 1.45051 1.34794 1.05503 1.16905 0.81405 0.81037 0.81807 1.90736 1.31161 1.34418 1.85192 1.21903 1.10006 0.99604 0.95137 1.27441 0.97069 0.97138 0.95625 1.73750 1.19086 1.06575 1.05448 1.84572 1.51323 1.24219 1.36463 1.23705 0.92828 0.92501 0.89942 1.20745 1.02480 0.90551 0.97257 1.23131 1.02813 1.03147 0.91018 1.23121 0.97473 0.96741 1.02203 1.21959 0.99443 0.93741 0.85796 1.22563 1.02846 0.97017 0.97921 1.22169 0.89725 0.88336 1.00260 1.86447 1.48095 1.55696 1.37774 0.93438 0.77777 0.95276 0.94726 0.88114 0.88817 0.76467 0.82969 0.87602 0.87334 0.87298 0.88135 0.91403 0.88808 0.89550 0.90019 0.93202 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.38 5.54 -59.91 -0.33 -18.72 16 10 C 0.16 3.11 5.74 -4.04 -0.02 3.09 16 11 C 0.08 1.29 1.73 -25.78 -0.04 1.24 16 12 H 0.05 0.94 7.61 -51.93 -0.40 0.54 16 13 C 0.05 0.60 4.42 -3.83 -0.02 0.58 16 14 N -0.60 -7.52 2.18 -173.52 -0.38 -7.90 16 15 C 0.60 8.50 7.59 -12.53 -0.10 8.41 16 16 O -0.54 -8.34 14.76 5.28 0.08 -8.27 16 17 C -0.26 -3.62 6.07 -102.89 -0.63 -4.24 16 18 C 0.01 0.13 9.57 -14.72 -0.14 -0.01 16 19 N -0.34 -5.28 12.01 31.80 0.38 -4.90 16 20 O 0.09 1.28 10.86 18.63 0.20 1.48 16 21 C 0.07 0.94 7.00 -34.63 -0.24 0.70 16 22 C -0.09 -0.90 5.90 -91.77 -0.54 -1.44 16 23 C -0.16 -1.19 10.19 -26.69 -0.27 -1.47 16 24 C -0.16 -1.14 10.24 -26.69 -0.27 -1.42 16 25 C 0.11 1.18 6.23 -3.00 -0.02 1.16 16 26 C -0.17 -1.68 5.79 -26.98 -0.16 -1.84 16 27 C 0.07 0.96 6.38 36.42 0.23 1.19 16 28 O -0.36 -6.16 9.38 -26.53 -0.25 -6.41 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 30 H 0.39 10.62 7.65 -40.82 -0.31 10.31 16 31 H 0.03 0.54 6.44 -51.93 -0.33 0.21 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.22 3.97 -51.93 -0.21 1.02 16 34 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.22 3.18 2.56 -52.49 -0.13 3.05 16 36 H 0.15 1.61 6.89 -51.93 -0.36 1.25 16 37 H 0.11 0.78 8.02 -51.93 -0.42 0.36 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.04 6.94 -51.92 -0.36 0.68 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 45 H 0.05 0.71 7.41 -51.93 -0.38 0.32 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -33.37 367.75 -7.76 -41.13 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.24 Total: 9.65 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.46 Total: -1.43 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.40 Total: -59.22 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.03 Total: -13.19 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.37 -7.76 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201765710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.971 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds