Wall clock time and date at job start Tue Mar 31 2020 19:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48499 * 109.47217 * 239.99292 * 3 2 1 5 5 H 1.48498 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47072 * 119.99953 * 3 2 1 7 7 C 1.38814 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99824 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99708 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46786 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47235 * 304.99562 * 11 10 9 13 13 C 1.54806 * 109.46632 * 185.00337 * 11 10 9 14 14 N 1.45121 * 109.52966 * 172.10727 * 13 11 10 15 15 C 1.34780 * 118.75773 * 269.29155 * 14 13 11 16 16 O 1.21601 * 120.00052 * 173.90153 * 15 14 13 17 17 C 1.47396 * 119.99588 * 353.62164 * 15 14 13 18 18 C 1.47106 * 128.56641 * 19.59970 * 17 15 14 19 19 N 1.30017 * 105.32831 * 179.97438 * 18 17 15 20 20 O 1.20651 * 112.30143 * 0.02562 * 19 18 17 21 21 C 1.33502 * 113.15859 * 359.71357 * 20 19 18 22 22 C 1.50700 * 126.83038 * 180.31306 * 21 20 19 23 23 C 1.53002 * 117.49999 * 8.91084 * 22 21 20 24 24 C 1.53005 * 117.49680 * 300.25436 * 22 21 20 25 25 C 1.47510 * 122.48479 * 89.56665 * 14 13 11 26 26 C 1.53946 * 110.82235 * 317.97598 * 25 14 13 27 27 C 1.51534 * 109.72632 * 320.30604 * 26 25 14 28 28 O 1.38013 * 109.46920 * 64.98945 * 11 10 9 29 29 H 0.97002 * 119.99384 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00346 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.46968 * 60.00021 * 10 9 7 32 32 H 1.08992 * 109.47275 * 299.99900 * 10 9 7 33 33 H 1.08993 * 109.46681 * 52.08522 * 13 11 10 34 34 H 1.09002 * 109.45785 * 292.12009 * 13 11 10 35 35 H 1.07995 * 127.33262 * 0.02562 * 18 17 15 36 36 H 1.08998 * 115.55050 * 154.59126 * 22 21 20 37 37 H 1.09001 * 117.50019 * 0.02562 * 23 22 21 38 38 H 1.09002 * 117.49877 * 145.02343 * 23 22 21 39 39 H 1.08997 * 117.50108 * 214.98301 * 24 22 21 40 40 H 1.09004 * 117.49787 * 0.02562 * 24 22 21 41 41 H 1.09000 * 109.16882 * 78.49798 * 25 14 13 42 42 H 1.09010 * 109.16578 * 197.69696 * 25 14 13 43 43 H 1.09003 * 109.45902 * 200.17991 * 26 25 14 44 44 H 1.08998 * 109.27991 * 80.32404 * 26 25 14 45 45 H 1.09001 * 109.58904 * 331.51159 * 27 26 25 46 46 H 1.09005 * 109.58869 * 211.08038 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3799 -4.7126 0.8433 13 6 1.8335 -6.1567 0.1285 14 7 0.8904 -7.2435 0.3167 15 6 0.5434 -7.5908 1.5719 16 8 -0.3262 -8.4210 1.7546 17 6 1.2221 -6.9688 2.7229 18 6 1.9900 -5.7148 2.7669 19 7 2.3856 -5.5970 3.9998 20 8 2.0143 -6.5147 4.6894 21 6 1.2889 -7.4141 4.0206 22 6 0.6692 -8.6697 4.5779 23 6 0.7008 -8.8595 6.0957 24 6 1.6085 -9.7054 5.1992 25 6 0.3019 -7.9864 -0.8136 26 6 -0.0944 -7.0280 -1.9513 27 6 -0.6928 -5.7632 -1.3695 28 8 0.3461 -4.8120 -1.1777 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6846 -3.7145 0.8905 32 1 2.6846 -3.7146 -0.8894 33 1 2.5070 -6.1080 0.9841 34 1 2.4116 -6.3306 -0.7791 35 1 2.1831 -5.0361 1.9493 36 1 -0.2048 -9.0402 4.0423 37 1 1.1694 -8.0761 6.6913 38 1 -0.1524 -9.3553 6.5588 39 1 1.3521 -10.7572 5.0729 40 1 2.6746 -9.4784 5.2053 41 1 1.0296 -8.7077 -1.1855 42 1 -0.5846 -8.5191 -0.4690 43 1 -0.8274 -7.5131 -2.5960 44 1 0.7913 -6.7758 -2.5343 45 1 -1.1634 -5.9883 -0.4124 46 1 -1.4351 -5.3598 -2.0582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201765710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:45 Heat of formation + Delta-G solvation = 32.454004 kcal Electronic energy + Delta-G solvation = -30232.152457 eV Core-core repulsion = 26127.106035 eV Total energy + Delta-G solvation = -4105.046423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.15877 -41.77730 -39.82874 -38.34867 -36.81585 -36.54645 -35.35847 -34.08080 -32.94457 -32.56556 -30.43214 -28.11428 -27.11709 -25.71788 -25.22469 -24.45130 -23.34036 -22.81729 -22.58647 -22.01543 -20.26999 -19.27031 -19.01205 -18.84140 -18.19025 -17.73708 -17.70704 -17.00062 -16.73017 -16.46186 -16.23871 -15.96373 -15.35107 -15.16145 -15.04560 -14.81146 -14.56043 -14.45354 -13.99430 -13.67360 -13.38156 -13.34603 -13.04012 -12.80546 -12.72928 -12.65537 -12.46733 -12.41408 -12.23518 -12.18925 -11.96959 -11.82675 -11.67960 -11.55992 -11.40012 -11.16516 -10.96613 -10.64976 -10.36295 -9.75239 -9.01894 -7.94156 -5.23873 -0.15044 0.57647 1.47332 1.50986 1.52636 1.56792 1.78811 1.85721 2.55984 2.62665 2.80279 3.01963 3.08056 3.29138 3.40073 3.49944 3.55966 3.77600 3.79897 3.85103 3.95960 3.99861 4.04840 4.10373 4.24074 4.27297 4.35863 4.44376 4.47393 4.52016 4.62010 4.72147 4.73488 4.80563 4.81555 4.93255 5.03027 5.05844 5.07851 5.17987 5.19060 5.35700 5.48741 6.03297 6.25894 6.65089 6.83648 7.01845 7.33022 8.06391 8.29955 9.29242 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.003673 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.516547 B = 7621.726298 C = 9450.488426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.157 3.843 11 C 0.092 3.908 12 H 0.029 0.971 13 C 0.060 3.940 14 N -0.595 5.595 15 C 0.598 3.402 16 O -0.554 6.554 17 C -0.279 4.279 18 C 0.005 3.995 19 N -0.368 5.368 20 O 0.097 5.903 21 C 0.087 3.913 22 C -0.118 4.118 23 C -0.151 4.151 24 C -0.141 4.141 25 C 0.109 3.891 26 C -0.153 4.153 27 C 0.066 3.934 28 O -0.389 6.389 29 H 0.250 0.750 30 H 0.374 0.626 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.216 0.784 36 H 0.145 0.855 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.036 0.964 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -24.854 4.670 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.382 5.382 10 C 0.030 3.970 11 C 0.032 3.968 12 H 0.047 0.953 13 C -0.064 4.064 14 N -0.325 5.325 15 C 0.387 3.613 16 O -0.434 6.434 17 C -0.287 4.287 18 C -0.177 4.177 19 N -0.073 5.073 20 O 0.037 5.963 21 C 0.022 3.978 22 C -0.137 4.137 23 C -0.188 4.188 24 C -0.178 4.178 25 C -0.011 4.011 26 C -0.191 4.191 27 C -0.010 4.010 28 O -0.308 6.308 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.232 0.768 36 H 0.162 0.838 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.133 0.867 44 H 0.103 0.897 45 H 0.054 0.946 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.277 -24.181 5.265 24.964 hybrid contribution -0.652 1.057 -0.577 1.369 sum 2.625 -23.124 4.688 23.740 Atomic orbital electron populations 1.69838 1.06764 1.26084 1.59332 1.25601 0.96361 1.01237 1.03582 0.85194 0.77173 0.78995 0.78289 1.20152 1.22327 1.20301 1.19634 0.91659 0.85117 1.41442 0.90096 1.42400 1.05599 1.00824 1.89336 1.20890 0.93028 0.83881 0.99193 1.22163 0.93119 0.94370 0.87186 0.95328 1.23045 0.92120 0.85108 1.06109 1.47681 1.44782 1.34423 1.05663 1.16975 0.81188 0.80873 0.82292 1.90719 1.31879 1.35342 1.85495 1.21978 1.10971 0.99796 0.95930 1.27415 0.97309 0.97457 0.95481 1.73720 1.20184 1.07559 1.05813 1.84541 1.51449 1.24093 1.36173 1.24242 0.91339 0.92624 0.89548 1.20837 1.03358 0.90407 0.99142 1.23273 1.03446 1.02951 0.89134 1.23266 0.97199 0.97138 1.00192 1.22159 0.99939 0.93933 0.85088 1.22479 1.03499 0.95203 0.97874 1.22365 0.89288 0.89358 0.99960 1.86380 1.49077 1.57564 1.37774 0.94090 0.79484 0.93756 0.94089 0.87478 0.86681 0.76817 0.83766 0.87692 0.85290 0.85237 0.87962 0.88876 0.89287 0.86678 0.89675 0.94601 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.74 -38.29 5.54 -343.44 -1.90 -40.20 16 10 C 0.16 6.08 5.74 86.38 0.50 6.58 16 11 C 0.09 3.01 1.73 31.21 0.05 3.06 16 12 H 0.03 1.07 7.61 -2.39 -0.02 1.05 16 13 C 0.06 1.47 4.42 87.25 0.39 1.85 16 14 N -0.59 -14.28 2.18 -821.14 -1.79 -16.07 16 15 C 0.60 16.70 7.59 86.65 0.66 17.36 16 16 O -0.55 -17.03 14.76 -4.03 -0.06 -17.08 16 17 C -0.28 -7.79 6.07 -18.75 -0.11 -7.91 16 18 C 0.00 0.14 9.57 87.29 0.84 0.97 16 19 N -0.37 -11.36 12.01 -54.20 -0.65 -12.01 16 20 O 0.10 2.62 10.86 76.91 0.84 3.45 16 21 C 0.09 2.16 7.00 25.48 0.18 2.34 16 22 C -0.12 -2.19 5.90 -11.54 -0.07 -2.25 16 23 C -0.15 -1.88 10.19 30.62 0.31 -1.57 16 24 C -0.14 -1.70 10.24 30.62 0.31 -1.39 16 25 C 0.11 2.07 6.23 86.51 0.54 2.60 16 26 C -0.15 -2.77 5.79 30.43 0.18 -2.59 16 27 C 0.07 1.75 6.38 71.50 0.46 2.20 16 28 O -0.39 -13.26 9.38 -117.84 -1.11 -14.37 16 29 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.37 21.21 7.65 -92.71 -0.71 20.50 16 31 H 0.05 1.62 6.44 -2.39 -0.02 1.60 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.11 2.51 3.97 -2.39 -0.01 2.50 16 34 H 0.12 2.34 8.11 -2.39 -0.02 2.32 16 35 H 0.22 6.35 2.56 -2.91 -0.01 6.34 16 36 H 0.14 2.95 6.89 -2.39 -0.02 2.94 16 37 H 0.10 1.35 8.02 -2.39 -0.02 1.33 16 38 H 0.13 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.82 6.94 -2.38 -0.02 1.80 16 43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.08 1.55 8.01 -2.39 -0.02 1.53 16 45 H 0.04 1.03 7.41 -2.39 -0.02 1.01 16 46 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -73.27 367.75 3.49 -69.78 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.32 Total: 34.05 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.53 Total: 4.24 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -4.06 Total: -128.83 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.33 Total: -28.00 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -73.27 3.49 -69.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201765710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.236 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds