Wall clock time and date at job start Tue Mar 31 2020 19:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99740 * 2 1 4 4 H 1.48503 * 109.47572 * 240.00281 * 3 2 1 5 5 H 1.48503 * 109.47355 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47275 * 120.00389 * 3 2 1 7 7 C 1.38813 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99765 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00016 * 180.27764 * 9 7 2 11 11 C 1.53007 * 109.47479 * 179.72271 * 10 9 7 12 12 H 1.09002 * 109.46738 * 60.00180 * 11 10 9 13 13 C 1.54799 * 109.47167 * 179.97438 * 11 10 9 14 14 N 1.45115 * 109.54038 * 187.88311 * 13 11 10 15 15 C 1.34778 * 118.76361 * 90.73881 * 14 13 11 16 16 O 1.21605 * 120.00291 * 173.80723 * 15 14 13 17 17 C 1.47391 * 119.99548 * 353.80459 * 15 14 13 18 18 C 1.47107 * 128.56748 * 352.54841 * 17 15 14 19 19 N 1.30013 * 105.32956 * 179.89487 * 18 17 15 20 20 O 1.20664 * 112.30190 * 0.39674 * 19 18 17 21 21 C 1.33491 * 113.15664 * 359.73078 * 20 19 18 22 22 C 1.50692 * 126.83062 * 179.97438 * 21 20 19 23 23 C 1.53001 * 117.49923 * 8.75306 * 22 21 20 24 24 C 1.53000 * 117.50178 * 300.09676 * 22 21 20 25 25 C 1.47515 * 122.47985 * 270.71738 * 14 13 11 26 26 C 1.53564 * 111.03407 * 41.62841 * 25 14 13 27 27 C 1.51540 * 109.57756 * 39.97650 * 26 25 14 28 28 O 1.38016 * 109.46936 * 300.00961 * 11 10 9 29 29 H 0.96994 * 120.00611 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00620 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47161 * 299.72651 * 10 9 7 32 32 H 1.08994 * 109.47191 * 59.72297 * 10 9 7 33 33 H 1.09002 * 109.46142 * 307.89937 * 13 11 10 34 34 H 1.08998 * 109.46438 * 67.87023 * 13 11 10 35 35 H 1.07997 * 127.33198 * 0.02562 * 18 17 15 36 36 H 1.08999 * 115.55050 * 154.41857 * 22 21 20 37 37 H 1.09001 * 117.49608 * 359.97438 * 23 22 21 38 38 H 1.09000 * 117.50126 * 145.01461 * 23 22 21 39 39 H 1.09008 * 117.49802 * 214.98025 * 24 22 21 40 40 H 1.09003 * 117.49592 * 359.97438 * 24 22 21 41 41 H 1.09008 * 109.16544 * 162.02710 * 25 14 13 42 42 H 1.09000 * 109.16936 * 281.22378 * 25 14 13 43 43 H 1.09000 * 109.45438 * 160.00532 * 26 25 14 44 44 H 1.08995 * 109.45365 * 279.94686 * 26 25 14 45 45 H 1.09001 * 109.59372 * 28.38152 * 27 26 25 46 46 H 1.09002 * 109.59165 * 148.81790 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 0.0050 11 6 1.0640 -4.8197 0.0108 12 1 0.4371 -4.7661 -0.8793 13 6 1.8381 -6.1603 0.0160 14 7 0.9076 -7.2588 -0.1661 15 6 0.6427 -7.6837 -1.4174 16 8 -0.0437 -8.6723 -1.5914 17 6 1.1851 -6.9500 -2.5750 18 6 1.9014 -5.6652 -2.5928 19 7 2.1741 -5.4411 -3.8441 20 8 1.7640 -6.3166 -4.5661 21 6 1.1412 -7.2943 -3.9041 22 6 0.5141 -8.5297 -4.4970 23 6 0.7631 -8.8056 -5.9811 24 6 -0.6144 -8.3320 -5.5110 25 6 0.2409 -7.9283 0.9667 26 6 -0.2225 -6.9068 2.0155 27 6 -0.7796 -5.6815 1.3194 28 8 0.2709 -4.7413 1.1375 29 1 -0.4851 0.8399 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6846 -3.7185 -0.8849 32 1 2.6852 -3.7103 0.8950 33 1 2.5658 -6.1626 -0.7955 34 1 2.3557 -6.2771 0.9682 35 1 2.1498 -5.0421 -1.7465 36 1 0.4465 -9.3890 -3.8298 37 1 1.3802 -8.0933 -6.5288 38 1 0.8590 -9.8464 -6.2904 39 1 -1.4244 -9.0615 -5.5111 40 1 -0.9036 -7.3083 -5.7490 41 1 -0.6240 -8.4799 0.5978 42 1 0.9380 -8.6263 1.4305 43 1 -0.9967 -7.3531 2.6397 44 1 0.6235 -6.6170 2.6386 45 1 -1.1872 -5.9659 0.3492 46 1 -1.5646 -5.2382 1.9321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201765711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:49 Heat of formation + Delta-G solvation = 57.360825 kcal Electronic energy + Delta-G solvation = -30377.350825 eV Core-core repulsion = 26273.384443 eV Total energy + Delta-G solvation = -4103.966382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.02182 -40.70726 -38.66369 -37.60064 -35.46604 -35.32965 -33.93961 -32.74070 -31.71386 -31.03600 -29.04596 -27.02540 -25.63490 -24.45125 -24.21453 -22.84999 -22.69919 -21.68220 -21.22966 -21.00837 -19.22589 -17.92254 -17.71304 -17.32204 -17.16011 -16.62942 -16.54903 -15.90953 -15.65526 -15.16230 -14.89010 -14.48300 -14.15471 -14.08932 -13.64812 -13.49998 -13.15405 -13.14579 -12.61316 -12.45035 -12.43269 -12.15660 -11.91194 -11.76829 -11.70389 -11.37733 -11.36010 -11.02693 -10.83211 -10.79759 -10.75365 -10.55983 -10.31398 -10.13870 -10.01036 -9.74164 -9.50861 -9.36673 -8.89335 -8.67860 -6.93716 -5.74900 -3.04616 0.86387 1.75075 2.53227 2.83014 2.97240 3.45622 3.49710 3.50449 3.50807 3.80983 4.02904 4.13715 4.33942 4.46952 4.52326 4.58788 4.62746 4.70400 4.79890 4.85480 5.02435 5.06411 5.12848 5.23738 5.28418 5.32210 5.39296 5.51831 5.54275 5.57748 5.61214 5.66529 5.68964 5.76704 5.78934 5.79105 5.94340 6.04345 6.19586 6.29872 6.36520 6.59639 7.09169 7.68659 7.85260 7.91441 8.13456 8.42318 9.54602 10.09521 10.45582 11.47438 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.003813 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.474894 B = 7340.930677 C = 9115.645676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.158 3.842 11 C 0.075 3.925 12 H 0.054 0.946 13 C 0.052 3.948 14 N -0.599 5.599 15 C 0.599 3.401 16 O -0.536 6.536 17 C -0.263 4.263 18 C 0.003 3.997 19 N -0.343 5.343 20 O 0.094 5.906 21 C 0.076 3.924 22 C -0.088 4.088 23 C -0.167 4.167 24 C -0.155 4.155 25 C 0.114 3.886 26 C -0.166 4.166 27 C 0.072 3.928 28 O -0.360 6.360 29 H 0.256 0.744 30 H 0.389 0.611 31 H 0.031 0.969 32 H 0.035 0.965 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.224 0.776 36 H 0.150 0.850 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 -21.781 -4.469 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.366 5.366 10 C 0.030 3.970 11 C 0.014 3.986 12 H 0.072 0.928 13 C -0.072 4.072 14 N -0.331 5.331 15 C 0.388 3.612 16 O -0.415 6.415 17 C -0.270 4.270 18 C -0.179 4.179 19 N -0.048 5.048 20 O 0.034 5.966 21 C 0.012 3.988 22 C -0.106 4.106 23 C -0.204 4.204 24 C -0.192 4.192 25 C -0.007 4.007 26 C -0.204 4.204 27 C -0.005 4.005 28 O -0.278 6.278 29 H 0.066 0.934 30 H 0.223 0.777 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.239 0.761 36 H 0.167 0.833 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.653 -21.067 -5.073 21.679 hybrid contribution -0.121 0.438 0.634 0.780 sum 0.532 -20.629 -4.439 21.108 Atomic orbital electron populations 1.69662 1.05130 1.25780 1.57190 1.24740 0.95498 0.97681 1.02711 0.86266 0.78534 0.83490 0.77862 1.21210 1.21683 1.21221 1.19159 0.90981 0.84007 1.43377 0.91142 1.42166 1.06064 0.99185 1.89194 1.20741 0.92449 0.85234 0.98604 1.22546 0.92981 0.93786 0.89239 0.92785 1.23132 0.92626 0.86743 1.04702 1.47612 1.44827 1.34865 1.05759 1.16902 0.79525 0.83022 0.81770 1.90745 1.39461 1.25828 1.85424 1.21924 1.11752 0.99034 0.94287 1.27792 0.98193 0.95765 0.96136 1.73765 1.17577 1.08918 1.04512 1.84581 1.53606 1.23310 1.35121 1.23744 0.93617 0.91245 0.90226 1.20657 1.03424 0.93241 0.93328 1.23145 0.99643 1.03453 0.94180 1.23111 0.92178 1.03748 1.00160 1.21857 0.98065 0.94578 0.86202 1.22516 1.02738 0.96789 0.98405 1.22178 0.89719 0.88960 0.99639 1.86455 1.44582 1.54221 1.42530 0.93446 0.77672 0.95148 0.94719 0.88493 0.88641 0.76063 0.83297 0.87656 0.87426 0.87247 0.88038 0.89025 0.91416 0.89475 0.89926 0.93329 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.32 5.49 -59.91 -0.33 -18.65 16 10 C 0.16 3.06 5.69 -4.04 -0.02 3.04 16 11 C 0.08 1.21 1.71 -25.78 -0.04 1.17 16 12 H 0.05 0.96 6.85 -51.93 -0.36 0.60 16 13 C 0.05 0.66 4.39 -3.84 -0.02 0.65 16 14 N -0.60 -7.54 2.19 -173.76 -0.38 -7.92 16 15 C 0.60 8.49 7.62 -12.53 -0.10 8.40 16 16 O -0.54 -8.26 14.77 5.27 0.08 -8.18 16 17 C -0.26 -3.72 6.12 -102.89 -0.63 -4.35 16 18 C 0.00 0.04 8.96 -14.72 -0.13 -0.09 16 19 N -0.34 -5.45 12.01 31.81 0.38 -5.06 16 20 O 0.09 1.31 10.86 18.66 0.20 1.51 16 21 C 0.08 0.98 7.00 -34.63 -0.24 0.74 16 22 C -0.09 -0.88 5.70 -91.77 -0.52 -1.41 16 23 C -0.17 -1.24 10.19 -26.70 -0.27 -1.51 16 24 C -0.15 -1.28 10.24 -26.70 -0.27 -1.55 16 25 C 0.11 1.21 6.11 -3.19 -0.02 1.19 16 26 C -0.17 -1.69 5.79 -27.18 -0.16 -1.85 16 27 C 0.07 0.96 6.37 36.42 0.23 1.19 16 28 O -0.36 -6.12 9.18 -26.54 -0.24 -6.37 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.39 10.63 7.53 -40.82 -0.31 10.33 16 31 H 0.03 0.57 6.40 -51.93 -0.33 0.24 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.17 4.61 -51.93 -0.24 0.93 16 34 H 0.10 1.09 8.11 -51.93 -0.42 0.67 16 35 H 0.22 3.33 1.85 -52.49 -0.10 3.23 16 36 H 0.15 1.55 7.09 -51.93 -0.37 1.18 16 37 H 0.11 0.79 8.02 -51.93 -0.42 0.37 16 38 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.11 0.74 8.14 -51.92 -0.42 0.31 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.01 7.08 -51.92 -0.37 0.64 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 45 H 0.05 0.68 7.40 -51.93 -0.38 0.29 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -33.31 365.90 -7.73 -41.04 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.21 Total: 10.05 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.44 Total: -1.77 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.40 Total: -59.29 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.04 Total: -13.04 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.31 -7.73 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201765711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.397 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds