Wall clock time and date at job start Tue Mar 31 2020 19:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99740 * 2 1 4 4 H 1.48503 * 109.47572 * 240.00281 * 3 2 1 5 5 H 1.48503 * 109.47355 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47275 * 120.00389 * 3 2 1 7 7 C 1.38813 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99765 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00016 * 180.27764 * 9 7 2 11 11 C 1.53007 * 109.47479 * 179.72271 * 10 9 7 12 12 H 1.09002 * 109.46738 * 60.00180 * 11 10 9 13 13 C 1.54799 * 109.47167 * 179.97438 * 11 10 9 14 14 N 1.45115 * 109.54038 * 187.88311 * 13 11 10 15 15 C 1.34778 * 118.76361 * 90.73881 * 14 13 11 16 16 O 1.21605 * 120.00291 * 173.80723 * 15 14 13 17 17 C 1.47391 * 119.99548 * 353.80459 * 15 14 13 18 18 C 1.47107 * 128.56748 * 352.54841 * 17 15 14 19 19 N 1.30013 * 105.32956 * 179.89487 * 18 17 15 20 20 O 1.20664 * 112.30190 * 0.39674 * 19 18 17 21 21 C 1.33491 * 113.15664 * 359.73078 * 20 19 18 22 22 C 1.50692 * 126.83062 * 179.97438 * 21 20 19 23 23 C 1.53001 * 117.49923 * 8.75306 * 22 21 20 24 24 C 1.53000 * 117.50178 * 300.09676 * 22 21 20 25 25 C 1.47515 * 122.47985 * 270.71738 * 14 13 11 26 26 C 1.53564 * 111.03407 * 41.62841 * 25 14 13 27 27 C 1.51540 * 109.57756 * 39.97650 * 26 25 14 28 28 O 1.38016 * 109.46936 * 300.00961 * 11 10 9 29 29 H 0.96994 * 120.00611 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00620 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47161 * 299.72651 * 10 9 7 32 32 H 1.08994 * 109.47191 * 59.72297 * 10 9 7 33 33 H 1.09002 * 109.46142 * 307.89937 * 13 11 10 34 34 H 1.08998 * 109.46438 * 67.87023 * 13 11 10 35 35 H 1.07997 * 127.33198 * 0.02562 * 18 17 15 36 36 H 1.08999 * 115.55050 * 154.41857 * 22 21 20 37 37 H 1.09001 * 117.49608 * 359.97438 * 23 22 21 38 38 H 1.09000 * 117.50126 * 145.01461 * 23 22 21 39 39 H 1.09008 * 117.49802 * 214.98025 * 24 22 21 40 40 H 1.09003 * 117.49592 * 359.97438 * 24 22 21 41 41 H 1.09008 * 109.16544 * 162.02710 * 25 14 13 42 42 H 1.09000 * 109.16936 * 281.22378 * 25 14 13 43 43 H 1.09000 * 109.45438 * 160.00532 * 26 25 14 44 44 H 1.08995 * 109.45365 * 279.94686 * 26 25 14 45 45 H 1.09001 * 109.59372 * 28.38152 * 27 26 25 46 46 H 1.09002 * 109.59165 * 148.81790 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 0.0050 11 6 1.0640 -4.8197 0.0108 12 1 0.4371 -4.7661 -0.8793 13 6 1.8381 -6.1603 0.0160 14 7 0.9076 -7.2588 -0.1661 15 6 0.6427 -7.6837 -1.4174 16 8 -0.0437 -8.6723 -1.5914 17 6 1.1851 -6.9500 -2.5750 18 6 1.9014 -5.6652 -2.5928 19 7 2.1741 -5.4411 -3.8441 20 8 1.7640 -6.3166 -4.5661 21 6 1.1412 -7.2943 -3.9041 22 6 0.5141 -8.5297 -4.4970 23 6 0.7631 -8.8056 -5.9811 24 6 -0.6144 -8.3320 -5.5110 25 6 0.2409 -7.9283 0.9667 26 6 -0.2225 -6.9068 2.0155 27 6 -0.7796 -5.6815 1.3194 28 8 0.2709 -4.7413 1.1375 29 1 -0.4851 0.8399 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6846 -3.7185 -0.8849 32 1 2.6852 -3.7103 0.8950 33 1 2.5658 -6.1626 -0.7955 34 1 2.3557 -6.2771 0.9682 35 1 2.1498 -5.0421 -1.7465 36 1 0.4465 -9.3890 -3.8298 37 1 1.3802 -8.0933 -6.5288 38 1 0.8590 -9.8464 -6.2904 39 1 -1.4244 -9.0615 -5.5111 40 1 -0.9036 -7.3083 -5.7490 41 1 -0.6240 -8.4799 0.5978 42 1 0.9380 -8.6263 1.4305 43 1 -0.9967 -7.3531 2.6397 44 1 0.6235 -6.6170 2.6386 45 1 -1.1872 -5.9659 0.3492 46 1 -1.5646 -5.2382 1.9321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201765711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:48 Heat of formation + Delta-G solvation = 36.025470 kcal Electronic energy + Delta-G solvation = -30378.275995 eV Core-core repulsion = 26273.384443 eV Total energy + Delta-G solvation = -4104.891552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.15283 -41.81466 -39.84355 -38.34802 -36.86098 -36.55000 -35.38721 -34.04101 -32.95614 -32.56454 -30.49183 -28.10715 -27.10897 -25.71045 -25.24394 -24.46680 -23.34665 -22.81731 -22.48669 -22.05482 -20.28670 -19.26599 -19.01757 -18.83850 -18.25306 -17.73326 -17.65872 -17.01921 -16.73388 -16.44916 -16.16483 -16.00764 -15.32993 -15.15725 -15.00735 -14.80779 -14.61510 -14.39098 -14.00250 -13.66443 -13.37829 -13.36761 -13.01281 -12.80978 -12.75050 -12.68947 -12.47306 -12.39170 -12.22435 -12.20104 -11.98890 -11.82672 -11.69392 -11.53486 -11.39861 -11.15725 -10.96085 -10.64139 -10.36755 -9.75906 -9.01234 -7.93645 -5.23296 -0.16764 0.58962 1.47521 1.51092 1.52747 1.56872 1.83127 1.88860 2.56031 2.61202 2.77962 3.03495 3.10521 3.28380 3.40273 3.46628 3.58424 3.77281 3.78619 3.84443 3.95042 3.97399 4.04972 4.11021 4.24011 4.26471 4.34344 4.43432 4.45949 4.52135 4.61937 4.71692 4.73152 4.78276 4.81384 4.92667 5.02551 5.04854 5.06674 5.17716 5.18626 5.35418 5.48901 6.03452 6.26239 6.65142 6.83856 7.03283 7.33691 8.06993 8.30839 9.29675 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.003813 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.474894 B = 7340.930677 C = 9115.645676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.737 5.737 10 C 0.154 3.846 11 C 0.088 3.912 12 H 0.033 0.967 13 C 0.064 3.936 14 N -0.595 5.595 15 C 0.597 3.403 16 O -0.551 6.551 17 C -0.281 4.281 18 C -0.001 4.001 19 N -0.370 5.370 20 O 0.095 5.905 21 C 0.086 3.914 22 C -0.110 4.110 23 C -0.145 4.145 24 C -0.152 4.152 25 C 0.112 3.888 26 C -0.153 4.153 27 C 0.066 3.934 28 O -0.388 6.388 29 H 0.250 0.750 30 H 0.375 0.625 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.220 0.780 36 H 0.148 0.852 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.084 0.916 45 H 0.037 0.963 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 -23.650 -4.379 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.379 4.379 8 H 0.098 0.902 9 N -0.380 5.380 10 C 0.027 3.973 11 C 0.028 3.972 12 H 0.050 0.950 13 C -0.060 4.060 14 N -0.326 5.326 15 C 0.387 3.613 16 O -0.431 6.431 17 C -0.288 4.288 18 C -0.183 4.183 19 N -0.075 5.075 20 O 0.036 5.964 21 C 0.022 3.978 22 C -0.129 4.129 23 C -0.182 4.182 24 C -0.189 4.189 25 C -0.009 4.009 26 C -0.191 4.191 27 C -0.010 4.010 28 O -0.307 6.307 29 H 0.059 0.941 30 H 0.206 0.794 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.236 0.764 36 H 0.166 0.834 37 H 0.123 0.877 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.134 0.866 44 H 0.103 0.897 45 H 0.055 0.945 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.553 -22.976 -4.971 23.559 hybrid contribution -0.425 0.926 0.577 1.171 sum 1.128 -22.050 -4.394 22.512 Atomic orbital electron populations 1.69833 1.06735 1.26076 1.59296 1.25584 0.96347 1.01176 1.03556 0.85206 0.77188 0.79057 0.78267 1.20373 1.22297 1.20146 1.19630 0.91639 0.85139 1.41490 0.90158 1.42357 1.05648 1.00699 1.89274 1.20930 0.93086 0.84107 0.99137 1.22251 0.92330 0.94374 0.88271 0.94963 1.22965 0.92125 0.84824 1.06088 1.47674 1.44618 1.34429 1.05918 1.16936 0.79355 0.82879 0.82180 1.90729 1.40199 1.26484 1.85677 1.22021 1.12697 0.98985 0.95104 1.27775 0.98393 0.96172 0.95915 1.73734 1.18774 1.10027 1.04959 1.84544 1.53633 1.23363 1.34854 1.24300 0.92160 0.91334 0.90019 1.20786 1.05364 0.91975 0.94811 1.23286 0.98526 1.04956 0.91437 1.23233 0.92932 1.03980 0.98721 1.22051 0.98423 0.94812 0.85579 1.22431 1.03502 0.95061 0.98126 1.22376 0.89211 0.89828 0.99574 1.86387 1.45582 1.56148 1.42534 0.94091 0.79352 0.93892 0.93933 0.87832 0.86556 0.76376 0.83439 0.87668 0.84825 0.85391 0.88862 0.89366 0.89104 0.86583 0.89698 0.94484 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 3 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -38.12 5.49 -343.45 -1.88 -40.01 16 10 C 0.15 5.98 5.69 86.38 0.49 6.47 16 11 C 0.09 2.86 1.71 31.21 0.05 2.92 16 12 H 0.03 1.19 6.85 -2.39 -0.02 1.17 16 13 C 0.06 1.56 4.39 87.25 0.38 1.94 16 14 N -0.60 -14.25 2.19 -821.90 -1.80 -16.05 16 15 C 0.60 16.56 7.62 86.65 0.66 17.22 16 16 O -0.55 -16.52 14.77 -4.05 -0.06 -16.58 16 17 C -0.28 -7.94 6.12 -18.74 -0.11 -8.06 16 18 C 0.00 -0.04 8.96 87.29 0.78 0.74 16 19 N -0.37 -11.90 12.01 -54.18 -0.65 -12.55 16 20 O 0.10 2.67 10.86 77.00 0.84 3.51 16 21 C 0.09 2.21 7.00 25.48 0.18 2.38 16 22 C -0.11 -2.09 5.70 -11.54 -0.07 -2.16 16 23 C -0.15 -1.83 10.19 30.62 0.31 -1.52 16 24 C -0.15 -2.25 10.24 30.62 0.31 -1.94 16 25 C 0.11 2.11 6.11 86.37 0.53 2.64 16 26 C -0.15 -2.76 5.79 30.31 0.18 -2.59 16 27 C 0.07 1.72 6.37 71.50 0.46 2.18 16 28 O -0.39 -13.18 9.18 -117.88 -1.08 -14.27 16 29 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.37 21.21 7.53 -92.71 -0.70 20.51 16 31 H 0.04 1.59 6.40 -2.39 -0.02 1.58 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 2.41 4.61 -2.39 -0.01 2.40 16 34 H 0.12 2.37 8.11 -2.39 -0.02 2.35 16 35 H 0.22 6.65 1.85 -2.91 -0.01 6.64 16 36 H 0.15 2.89 7.09 -2.39 -0.02 2.87 16 37 H 0.10 1.36 8.02 -2.39 -0.02 1.34 16 38 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.77 7.08 -2.38 -0.02 1.76 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 1.56 8.01 -2.39 -0.02 1.54 16 45 H 0.04 1.04 7.40 -2.39 -0.02 1.02 16 46 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -72.88 365.90 3.46 -69.42 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.34 Total: 34.87 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.46 Total: 3.27 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -4.05 Total: -128.93 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.31 Total: -27.34 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -72.88 3.46 -69.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201765711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.446 kcal (2) G-P(sol) polarization free energy of solvation -72.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds