Wall clock time and date at job start Tue Mar 31 2020 18:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47364 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47303 * 305.00253 * 11 10 9 13 13 C 1.54804 * 109.47324 * 185.00258 * 11 10 9 14 14 N 1.45118 * 109.54107 * 172.11269 * 13 11 10 15 15 C 1.34776 * 118.75653 * 269.29296 * 14 13 11 16 16 O 1.21281 * 120.00097 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99980 * 179.97438 * 15 14 13 18 18 N 1.46510 * 109.47246 * 179.97438 * 17 15 14 19 19 C 1.35762 * 119.62380 * 269.73027 * 18 17 15 20 20 C 1.35355 * 120.69517 * 179.76153 * 19 18 17 21 21 C 1.40187 * 119.95153 * 0.50807 * 20 19 18 22 22 C 1.36405 * 119.26401 * 359.74647 * 21 20 19 23 23 C 1.34656 * 119.62103 * 89.99785 * 18 17 15 24 24 O 1.22061 * 119.98605 * 0.02562 * 23 18 17 25 25 C 1.47509 * 122.48825 * 89.28732 * 14 13 11 26 26 C 1.53573 * 111.02618 * 318.37937 * 25 14 13 27 27 C 1.51535 * 109.57860 * 320.01479 * 26 25 14 28 28 O 1.38024 * 109.46993 * 64.99505 * 11 10 9 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46865 * 300.00257 * 10 9 7 32 32 H 1.09001 * 109.47115 * 59.99779 * 10 9 7 33 33 H 1.09004 * 109.45642 * 292.13432 * 13 11 10 34 34 H 1.08995 * 109.46301 * 52.08678 * 13 11 10 35 35 H 1.08994 * 109.47552 * 299.99762 * 17 15 14 36 36 H 1.09004 * 109.46997 * 59.99925 * 17 15 14 37 37 H 1.07994 * 119.65268 * 359.97438 * 19 18 17 38 38 H 1.08007 * 120.01940 * 180.23319 * 20 19 18 39 39 H 1.07999 * 120.36795 * 179.77479 * 21 20 19 40 40 H 1.08001 * 120.34192 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.16720 * 197.97644 * 25 14 13 42 42 H 1.08999 * 109.16300 * 78.77523 * 25 14 13 43 43 H 1.09001 * 109.45381 * 199.98622 * 26 25 14 44 44 H 1.08994 * 109.45504 * 80.04773 * 26 25 14 45 45 H 1.09002 * 109.59087 * 331.61929 * 27 26 25 46 46 H 1.09008 * 109.58726 * 211.18600 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0638 -4.8197 -0.0097 12 1 0.3831 -4.7145 0.8352 13 6 1.8340 -6.1570 0.1117 14 7 0.8918 -7.2444 0.3009 15 6 0.5495 -7.5945 1.5566 16 8 1.0273 -7.0044 2.5023 17 6 -0.4270 -8.7193 1.7854 18 7 -0.6314 -8.9035 3.2245 19 6 0.1653 -9.7621 3.9110 20 6 -0.0013 -9.9451 5.2417 21 6 -1.0120 -9.2520 5.9225 22 6 -1.8146 -8.3936 5.2300 23 6 -1.6107 -8.2232 3.8500 24 8 -2.3222 -7.4588 3.2180 25 6 0.2945 -7.9808 -0.8290 26 6 -0.1014 -7.0237 -1.9629 27 6 -0.6978 -5.7603 -1.3759 28 8 0.3418 -4.8095 -1.1860 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.6812 -3.7125 -0.9040 32 1 2.6880 -3.7165 0.8760 33 1 2.4089 -6.3288 -0.7984 34 1 2.5107 -6.1102 0.9649 35 1 -1.3780 -8.4771 1.3112 36 1 -0.0298 -9.6385 1.3547 37 1 0.9423 -10.3021 3.3905 38 1 0.6411 -10.6281 5.7778 39 1 -1.1532 -9.3957 6.9835 40 1 -2.5983 -7.8504 5.7370 41 1 -0.5924 -8.5109 -0.4819 42 1 1.0174 -8.7038 -1.2070 43 1 -0.8367 -7.5073 -2.6060 44 1 0.7819 -6.7699 -2.5488 45 1 -1.1648 -5.9876 -0.4176 46 1 -1.4427 -5.3554 -2.0610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202030933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:02 Heat of formation + Delta-G solvation = -43.165795 kcal Electronic energy + Delta-G solvation = -29786.092424 eV Core-core repulsion = 25677.766880 eV Total energy + Delta-G solvation = -4108.325543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80467 -40.47470 -38.54213 -37.09539 -35.84371 -34.90967 -34.75000 -33.03787 -30.91226 -30.30639 -29.75176 -27.98216 -26.66847 -24.92836 -24.13071 -23.21705 -22.51317 -21.86267 -21.07683 -19.59995 -18.02374 -17.85181 -17.60633 -17.21540 -16.73913 -16.52131 -16.27991 -16.01626 -15.64283 -15.13941 -14.89119 -14.49449 -14.34267 -14.17760 -14.01284 -13.63861 -13.48437 -13.10425 -12.90905 -12.81650 -12.61351 -12.42917 -12.21156 -12.14205 -12.06858 -11.68964 -11.47737 -11.08166 -10.76334 -10.64164 -10.48649 -10.33409 -10.17148 -9.93853 -9.88340 -9.51083 -9.12334 -8.78840 -8.68720 -8.23703 -6.87827 -5.98723 -2.97061 0.55427 1.64903 2.11556 2.24608 2.73514 3.42961 3.58390 3.63269 3.80495 3.87282 4.02372 4.15609 4.22141 4.43472 4.53169 4.55683 4.67476 4.75510 4.82968 4.85352 4.97810 5.03074 5.12802 5.18288 5.26062 5.35009 5.39427 5.51300 5.64599 5.72237 5.75484 5.76734 5.87098 5.90991 6.00589 6.02683 6.17086 6.20525 6.33744 6.60774 6.72993 6.77070 6.96333 7.78431 7.84870 7.89091 7.93790 8.88197 9.35802 10.22365 10.38248 11.50217 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.002989 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.081989 B = 9366.272616 C =10467.503200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.047 4.047 3 Si 1.082 2.918 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.330 4.330 8 H 0.064 0.936 9 N -0.737 5.737 10 C 0.173 3.827 11 C 0.087 3.913 12 H 0.051 0.949 13 C 0.083 3.917 14 N -0.605 5.605 15 C 0.494 3.506 16 O -0.516 6.516 17 C 0.071 3.929 18 N -0.482 5.482 19 C 0.139 3.861 20 C -0.231 4.231 21 C -0.018 4.018 22 C -0.238 4.238 23 C 0.518 3.482 24 O -0.546 6.546 25 C 0.102 3.898 26 C -0.166 4.166 27 C 0.070 3.930 28 O -0.369 6.369 29 H 0.256 0.744 30 H 0.370 0.630 31 H 0.028 0.972 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.149 0.851 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 -30.320 3.548 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.244 4.244 3 Si 0.913 3.087 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.383 5.383 10 C 0.045 3.955 11 C 0.027 3.973 12 H 0.069 0.931 13 C -0.040 4.040 14 N -0.339 5.339 15 C 0.280 3.720 16 O -0.390 6.390 17 C -0.054 4.054 18 N -0.193 5.193 19 C 0.013 3.987 20 C -0.254 4.254 21 C -0.039 4.039 22 C -0.260 4.260 23 C 0.320 3.680 24 O -0.427 6.427 25 C -0.020 4.020 26 C -0.204 4.204 27 C -0.006 4.006 28 O -0.287 6.287 29 H 0.067 0.933 30 H 0.203 0.797 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.176 0.824 38 H 0.163 0.837 39 H 0.153 0.847 40 H 0.167 0.833 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.295 -27.701 3.464 27.918 hybrid contribution -0.025 -2.097 0.169 2.104 sum -0.320 -29.798 3.633 30.020 Atomic orbital electron populations 1.70845 1.06030 1.28525 1.53558 1.25788 0.97103 1.00948 1.00585 0.83224 0.74151 0.75572 0.75769 1.21055 1.22317 1.22315 1.20022 0.91947 0.85806 1.48371 0.91808 1.42226 1.05043 1.00487 1.90539 1.20524 0.92240 0.84186 0.98565 1.22295 0.93701 0.94079 0.87256 0.93097 1.22439 0.91967 0.86134 1.03500 1.47912 1.45308 1.35284 1.05430 1.20757 0.82694 0.85127 0.83467 1.90794 1.53491 1.53731 1.41022 1.21881 1.02419 0.99594 0.81514 1.45081 1.28876 1.36154 1.09168 1.21882 0.92765 0.90392 0.93704 1.20626 1.04073 1.07663 0.93057 1.21439 0.91179 0.90940 1.00349 1.22126 1.05542 1.05295 0.93002 1.17191 0.80304 0.81152 0.89360 1.90992 1.46996 1.37148 1.67592 1.22076 0.98146 0.94375 0.87391 1.22500 1.03094 0.97044 0.97787 1.22151 0.89904 0.88506 1.00075 1.86431 1.47879 1.55673 1.38761 0.93308 0.79664 0.95412 0.94811 0.89553 0.88780 0.85274 0.86163 0.82374 0.83696 0.84724 0.83320 0.90138 0.90908 0.89407 0.89742 0.93333 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.16 13.70 55.49 0.76 -30.40 16 2 C -0.05 -1.45 5.50 -17.43 -0.10 -1.55 16 3 Si 1.08 27.35 29.92 -169.99 -5.09 22.26 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 5 H -0.30 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.33 -10.05 9.99 -15.06 -0.15 -10.20 16 8 H 0.06 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.74 -20.63 5.54 -59.91 -0.33 -20.96 16 10 C 0.17 3.89 5.92 -4.05 -0.02 3.86 16 11 C 0.09 1.63 2.68 -25.79 -0.07 1.56 16 12 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 13 C 0.08 1.19 4.86 -3.83 -0.02 1.18 16 14 N -0.61 -7.11 2.19 -172.48 -0.38 -7.49 16 15 C 0.49 6.49 7.70 -10.99 -0.08 6.40 16 16 O -0.52 -9.22 15.86 5.56 0.09 -9.13 16 17 C 0.07 0.65 4.15 -5.19 -0.02 0.63 16 18 N -0.48 -5.18 2.07 -121.06 -0.25 -5.43 16 19 C 0.14 1.03 10.28 -16.84 -0.17 0.86 16 20 C -0.23 -1.56 10.01 -39.88 -0.40 -1.96 16 21 C -0.02 -0.14 10.10 -39.51 -0.40 -0.54 16 22 C -0.24 -2.69 9.99 -39.38 -0.39 -3.09 16 23 C 0.52 7.34 7.40 -15.45 -0.11 7.22 16 24 O -0.55 -9.99 16.64 4.86 0.08 -9.91 16 25 C 0.10 0.78 6.00 -3.19 -0.02 0.76 16 26 C -0.17 -1.51 5.79 -27.17 -0.16 -1.66 16 27 C 0.07 0.96 6.37 36.42 0.23 1.19 16 28 O -0.37 -6.78 9.38 -26.57 -0.25 -7.03 16 29 H 0.26 8.44 6.77 -40.82 -0.28 8.16 16 30 H 0.37 10.80 6.49 -40.82 -0.26 10.54 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 34 H 0.09 1.45 7.27 -51.93 -0.38 1.07 16 35 H 0.13 1.20 6.66 -51.93 -0.35 0.86 16 36 H 0.12 0.49 7.91 -51.93 -0.41 0.08 16 37 H 0.16 0.58 8.03 -52.49 -0.42 0.16 16 38 H 0.15 0.55 8.06 -52.48 -0.42 0.12 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.08 0.43 5.88 -51.93 -0.31 0.13 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 45 H 0.05 0.70 7.40 -51.93 -0.38 0.32 16 46 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -42.35 376.74 -8.21 -50.56 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.64 Total: 7.18 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.89 Total: 4.68 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.20 Total: -64.29 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.08 Total: -26.07 kcal Atomic # 14 Polarization: 27.35 SS G_CDS: -5.09 Total: 22.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -42.35 -8.21 -50.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202030933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.392 kcal (2) G-P(sol) polarization free energy of solvation -42.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds