Wall clock time and date at job start Tue Mar 31 2020 18:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47364 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47303 * 305.00253 * 11 10 9 13 13 C 1.54804 * 109.47324 * 185.00258 * 11 10 9 14 14 N 1.45118 * 109.54107 * 172.11269 * 13 11 10 15 15 C 1.34776 * 118.75653 * 269.29296 * 14 13 11 16 16 O 1.21281 * 120.00097 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99980 * 179.97438 * 15 14 13 18 18 N 1.46510 * 109.47246 * 179.97438 * 17 15 14 19 19 C 1.35762 * 119.62380 * 269.73027 * 18 17 15 20 20 C 1.35355 * 120.69517 * 179.76153 * 19 18 17 21 21 C 1.40187 * 119.95153 * 0.50807 * 20 19 18 22 22 C 1.36405 * 119.26401 * 359.74647 * 21 20 19 23 23 C 1.34656 * 119.62103 * 89.99785 * 18 17 15 24 24 O 1.22061 * 119.98605 * 0.02562 * 23 18 17 25 25 C 1.47509 * 122.48825 * 89.28732 * 14 13 11 26 26 C 1.53573 * 111.02618 * 318.37937 * 25 14 13 27 27 C 1.51535 * 109.57860 * 320.01479 * 26 25 14 28 28 O 1.38024 * 109.46993 * 64.99505 * 11 10 9 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46865 * 300.00257 * 10 9 7 32 32 H 1.09001 * 109.47115 * 59.99779 * 10 9 7 33 33 H 1.09004 * 109.45642 * 292.13432 * 13 11 10 34 34 H 1.08995 * 109.46301 * 52.08678 * 13 11 10 35 35 H 1.08994 * 109.47552 * 299.99762 * 17 15 14 36 36 H 1.09004 * 109.46997 * 59.99925 * 17 15 14 37 37 H 1.07994 * 119.65268 * 359.97438 * 19 18 17 38 38 H 1.08007 * 120.01940 * 180.23319 * 20 19 18 39 39 H 1.07999 * 120.36795 * 179.77479 * 21 20 19 40 40 H 1.08001 * 120.34192 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.16720 * 197.97644 * 25 14 13 42 42 H 1.08999 * 109.16300 * 78.77523 * 25 14 13 43 43 H 1.09001 * 109.45381 * 199.98622 * 26 25 14 44 44 H 1.08994 * 109.45504 * 80.04773 * 26 25 14 45 45 H 1.09002 * 109.59087 * 331.61929 * 27 26 25 46 46 H 1.09008 * 109.58726 * 211.18600 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0638 -4.8197 -0.0097 12 1 0.3831 -4.7145 0.8352 13 6 1.8340 -6.1570 0.1117 14 7 0.8918 -7.2444 0.3009 15 6 0.5495 -7.5945 1.5566 16 8 1.0273 -7.0044 2.5023 17 6 -0.4270 -8.7193 1.7854 18 7 -0.6314 -8.9035 3.2245 19 6 0.1653 -9.7621 3.9110 20 6 -0.0013 -9.9451 5.2417 21 6 -1.0120 -9.2520 5.9225 22 6 -1.8146 -8.3936 5.2300 23 6 -1.6107 -8.2232 3.8500 24 8 -2.3222 -7.4588 3.2180 25 6 0.2945 -7.9808 -0.8290 26 6 -0.1014 -7.0237 -1.9629 27 6 -0.6978 -5.7603 -1.3759 28 8 0.3418 -4.8095 -1.1860 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.6812 -3.7125 -0.9040 32 1 2.6880 -3.7165 0.8760 33 1 2.4089 -6.3288 -0.7984 34 1 2.5107 -6.1102 0.9649 35 1 -1.3780 -8.4771 1.3112 36 1 -0.0298 -9.6385 1.3547 37 1 0.9423 -10.3021 3.3905 38 1 0.6411 -10.6281 5.7778 39 1 -1.1532 -9.3957 6.9835 40 1 -2.5983 -7.8504 5.7370 41 1 -0.5924 -8.5109 -0.4819 42 1 1.0174 -8.7038 -1.2070 43 1 -0.8367 -7.5073 -2.6060 44 1 0.7819 -6.7699 -2.5488 45 1 -1.1648 -5.9876 -0.4176 46 1 -1.4427 -5.3554 -2.0610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202030933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:01 Heat of formation + Delta-G solvation = -75.311330 kcal Electronic energy + Delta-G solvation = -29787.486359 eV Core-core repulsion = 25677.766880 eV Total energy + Delta-G solvation = -4109.719478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65067 -41.53487 -39.78106 -38.03122 -37.20631 -36.51519 -35.62293 -34.51344 -32.65774 -31.20047 -30.74884 -29.30559 -27.67477 -26.49894 -25.05903 -24.67619 -23.78466 -22.96179 -22.46954 -20.53500 -19.46301 -18.92534 -18.68154 -18.37684 -17.87024 -17.71877 -17.36416 -17.14957 -16.65840 -16.47383 -15.87716 -15.78437 -15.57092 -15.31568 -15.14221 -15.03328 -14.96815 -14.61694 -14.12883 -13.79410 -13.67927 -13.39109 -13.26089 -13.05798 -12.90785 -12.80722 -12.76383 -12.61207 -12.40482 -12.17632 -11.89950 -11.68643 -11.59863 -11.35268 -11.15953 -11.01970 -10.85197 -10.70571 -9.82110 -9.20297 -9.02401 -8.47519 -5.40862 -0.13920 0.89225 1.24864 1.38036 1.54251 1.66726 1.82954 1.87998 2.55347 2.64152 2.68612 3.21497 3.35047 3.44490 3.58343 3.71305 3.72685 3.83398 3.92719 3.95062 3.95502 4.03872 4.14842 4.15542 4.18711 4.32605 4.32783 4.38367 4.48333 4.55402 4.62602 4.71222 4.75725 4.92922 4.98072 5.02630 5.09197 5.13676 5.34918 5.36352 5.49230 5.61610 5.99578 6.04811 6.39510 6.57359 6.84115 6.92360 7.00373 7.89877 8.04105 9.03955 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.002989 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.081989 B = 9366.272616 C =10467.503200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.109 4.109 3 Si 1.136 2.864 4 H -0.291 1.291 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.340 4.340 8 H 0.072 0.928 9 N -0.755 5.755 10 C 0.170 3.830 11 C 0.103 3.897 12 H 0.004 0.996 13 C 0.099 3.901 14 N -0.602 5.602 15 C 0.487 3.513 16 O -0.575 6.575 17 C 0.074 3.926 18 N -0.483 5.483 19 C 0.136 3.864 20 C -0.231 4.231 21 C 0.009 3.991 22 C -0.290 4.290 23 C 0.495 3.505 24 O -0.616 6.616 25 C 0.095 3.905 26 C -0.156 4.156 27 C 0.060 3.940 28 O -0.397 6.397 29 H 0.239 0.761 30 H 0.357 0.643 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.186 0.814 37 H 0.207 0.793 38 H 0.187 0.813 39 H 0.168 0.832 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.031 0.969 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -34.244 2.805 34.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.299 4.299 3 Si 0.959 3.041 4 H -0.217 1.217 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.470 4.470 8 H 0.090 0.910 9 N -0.399 5.399 10 C 0.043 3.957 11 C 0.043 3.957 12 H 0.022 0.978 13 C -0.026 4.026 14 N -0.334 5.334 15 C 0.275 3.725 16 O -0.454 6.454 17 C -0.051 4.051 18 N -0.192 5.192 19 C 0.010 3.990 20 C -0.252 4.252 21 C -0.013 4.013 22 C -0.312 4.312 23 C 0.301 3.699 24 O -0.504 6.504 25 C -0.025 4.025 26 C -0.194 4.194 27 C -0.016 4.016 28 O -0.317 6.317 29 H 0.049 0.951 30 H 0.189 0.811 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.143 0.857 36 H 0.203 0.797 37 H 0.223 0.777 38 H 0.204 0.796 39 H 0.185 0.815 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.143 0.857 44 H 0.100 0.900 45 H 0.050 0.950 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.169 -31.744 2.696 31.932 hybrid contribution -0.745 -1.010 0.424 1.325 sum 1.425 -32.753 3.120 32.933 Atomic orbital electron populations 1.70983 1.07353 1.27561 1.56230 1.27514 0.97096 1.05152 1.00167 0.82568 0.73315 0.70853 0.77405 1.21692 1.20163 1.19724 1.20467 0.92558 0.86926 1.47093 0.90996 1.42491 1.04714 1.02002 1.90671 1.20681 0.92991 0.83577 0.98493 1.21893 0.92570 0.95391 0.85894 0.97795 1.22080 0.91728 0.84665 1.04135 1.48025 1.44569 1.34299 1.06555 1.21533 0.82415 0.85493 0.83041 1.90765 1.55814 1.55910 1.42914 1.22154 1.01179 1.00610 0.81109 1.45132 1.28227 1.35706 1.10088 1.22802 0.92516 0.89203 0.94489 1.21226 1.03533 1.07341 0.93146 1.21903 0.89420 0.88135 1.01812 1.22100 1.07989 1.08577 0.92522 1.17659 0.80838 0.81106 0.90337 1.90930 1.49928 1.40551 1.68968 1.22510 1.00360 0.94103 0.85501 1.22433 1.03598 0.94823 0.98508 1.22454 0.89247 0.90162 0.99688 1.86344 1.49134 1.58235 1.37948 0.95103 0.81133 0.94446 0.94990 0.86809 0.90129 0.85738 0.79701 0.77672 0.79582 0.81471 0.84409 0.87335 0.86656 0.85724 0.90012 0.95047 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -66.67 13.70 21.65 0.30 -66.37 16 2 C -0.11 -6.89 5.50 84.86 0.47 -6.43 16 3 Si 1.14 55.44 29.92 68.60 2.05 57.49 16 4 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.34 -21.15 9.99 84.03 0.84 -20.31 16 8 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.75 -44.31 5.54 -343.47 -1.90 -46.21 16 10 C 0.17 7.94 5.92 86.38 0.51 8.45 16 11 C 0.10 4.08 2.68 31.21 0.08 4.16 16 12 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 13 C 0.10 2.81 4.86 87.25 0.42 3.23 16 14 N -0.60 -13.19 2.19 -817.98 -1.79 -14.98 16 15 C 0.49 12.46 7.70 87.66 0.67 13.14 16 16 O -0.58 -21.25 15.86 -3.03 -0.05 -21.29 16 17 C 0.07 1.19 4.15 85.63 0.36 1.54 16 18 N -0.48 -9.83 2.07 -655.05 -1.36 -11.19 16 19 C 0.14 1.52 10.28 83.42 0.86 2.38 16 20 C -0.23 -2.23 10.01 22.08 0.22 -2.01 16 21 C 0.01 0.13 10.10 22.32 0.23 0.35 16 22 C -0.29 -7.01 9.99 22.40 0.22 -6.79 16 23 C 0.50 14.94 7.40 84.82 0.63 15.57 16 24 O -0.62 -24.94 16.64 -5.51 -0.09 -25.04 16 25 C 0.10 1.06 6.00 86.38 0.52 1.57 16 26 C -0.16 -2.36 5.79 30.31 0.18 -2.18 16 27 C 0.06 1.66 6.37 71.50 0.46 2.11 16 28 O -0.40 -15.16 9.38 -117.98 -1.11 -16.27 16 29 H 0.24 16.68 6.77 -92.71 -0.63 16.06 16 30 H 0.36 22.36 6.49 -92.71 -0.60 21.76 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.11 2.62 8.11 -2.38 -0.02 2.60 16 34 H 0.08 2.53 7.27 -2.39 -0.02 2.51 16 35 H 0.12 2.20 6.66 -2.39 -0.02 2.18 16 36 H 0.19 0.43 7.91 -2.38 -0.02 0.41 16 37 H 0.21 0.27 8.03 -2.91 -0.02 0.24 16 38 H 0.19 0.30 8.06 -2.91 -0.02 0.28 16 39 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 41 H 0.11 0.65 5.88 -2.39 -0.01 0.64 16 42 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.36 8.01 -2.39 -0.02 1.34 16 45 H 0.03 0.96 7.40 -2.39 -0.02 0.94 16 46 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -104.23 376.74 3.25 -100.99 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.54 Total: 28.09 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.66 Total: 14.79 kcal Atomic # 7 Polarization: -134.00 SS G_CDS: -4.76 Total: -138.76 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -1.25 Total: -62.60 kcal Atomic # 14 Polarization: 55.44 SS G_CDS: 2.05 Total: 57.49 kcal Total: -104.23 3.25 -100.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202030933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.675 kcal (2) G-P(sol) polarization free energy of solvation -104.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds