Wall clock time and date at job start Tue Mar 31 2020 18:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86793 * 120.00078 * 2 1 4 4 H 1.48495 * 109.47526 * 270.00434 * 3 2 1 5 5 H 1.48506 * 109.46963 * 30.00506 * 3 2 1 6 6 H 1.48504 * 109.47234 * 150.00202 * 3 2 1 7 7 C 1.38949 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99984 * 359.97438 * 7 2 1 9 9 N 1.37099 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.34774 * 120.00238 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99955 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99893 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47114 * 179.97438 * 12 10 9 14 14 C 1.46893 * 111.00232 * 179.97438 * 13 12 10 15 15 C 1.53042 * 109.46138 * 204.99831 * 14 13 12 16 16 C 1.53190 * 109.31255 * 178.62619 * 15 14 13 17 17 N 1.46927 * 108.77744 * 54.63566 * 16 15 14 18 18 C 1.34775 * 120.63315 * 126.36501 * 17 16 15 19 19 O 1.21274 * 119.99884 * 0.02562 * 18 17 16 20 20 C 1.50702 * 120.00067 * 180.02562 * 18 17 16 21 21 C 1.50703 * 109.47066 * 180.02562 * 20 18 17 22 22 C 1.34507 * 125.78834 * 89.71402 * 21 20 18 23 23 C 1.41386 * 106.84010 * 180.26118 * 22 21 20 24 24 C 1.34511 * 106.84141 * 0.02562 * 23 22 21 25 25 O 1.34304 * 125.78797 * 270.02580 * 21 20 18 26 26 C 1.46929 * 118.73795 * 306.64465 * 17 16 15 27 27 C 1.52764 * 109.00773 * 53.30697 * 26 17 16 28 28 H 0.97001 * 119.99975 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99465 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47448 * 59.99364 * 12 10 9 31 31 H 1.09005 * 109.46935 * 299.99749 * 12 10 9 32 32 H 1.00906 * 110.99996 * 303.95197 * 13 12 10 33 33 H 1.09006 * 109.45887 * 324.97080 * 14 13 12 34 34 H 1.09002 * 109.49730 * 58.67917 * 15 14 13 35 35 H 1.08992 * 109.52302 * 298.59437 * 15 14 13 36 36 H 1.09006 * 109.59176 * 294.85147 * 16 15 14 37 37 H 1.08999 * 109.70863 * 174.49173 * 16 15 14 38 38 H 1.09000 * 109.47323 * 60.00369 * 20 18 17 39 39 H 1.09004 * 109.47219 * 300.00354 * 20 18 17 40 40 H 1.08004 * 126.58507 * 0.26980 * 22 21 20 41 41 H 1.08000 * 126.57862 * 179.97438 * 23 22 21 42 42 H 1.08000 * 125.79502 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.58784 * 173.14006 * 26 17 16 44 44 H 1.08998 * 109.58713 * 293.56640 * 26 17 16 45 45 H 1.09002 * 109.56396 * 185.55898 * 27 26 17 46 46 H 1.08990 * 109.38709 * 65.51764 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0021 11 8 3.4472 -3.4210 -0.0021 12 6 5.5607 -2.3706 -0.0021 13 7 6.0504 -3.7556 -0.0027 14 6 7.5188 -3.7948 -0.0034 15 6 7.9933 -5.1156 -0.6137 16 6 9.5247 -5.1384 -0.6442 17 7 10.0286 -4.8853 0.7126 18 6 10.8997 -5.7353 1.2913 19 8 11.2755 -6.7200 0.6915 20 6 11.4069 -5.4620 2.6839 21 6 12.3609 -6.5541 3.0944 22 6 13.6902 -6.5557 2.8887 23 6 14.1860 -7.7667 3.4241 24 6 13.1300 -8.4329 3.9244 25 8 12.0272 -7.6934 3.7223 26 6 9.5598 -3.6911 1.4288 27 6 8.0322 -3.6816 1.4339 28 1 -0.4850 0.8401 0.0004 29 1 3.8648 -0.3634 -0.0014 30 1 5.9241 -1.8575 0.8882 31 1 5.9240 -1.8560 -0.8917 32 1 5.6749 -4.2723 0.7785 33 1 7.9040 -2.9631 -0.5932 34 1 7.6079 -5.2063 -1.6293 35 1 7.6290 -5.9472 -0.0107 36 1 9.8885 -4.3638 -1.3194 37 1 9.8711 -6.1136 -0.9865 38 1 10.5666 -5.4335 3.3776 39 1 11.9244 -4.5028 2.7005 40 1 14.2680 -5.7806 2.4072 41 1 15.2151 -8.0943 3.4296 42 1 13.1633 -9.3981 4.4077 43 1 9.9271 -3.7127 2.4549 44 1 9.9263 -2.7961 0.9261 45 1 7.6744 -2.7515 1.8757 46 1 7.6671 -4.5260 2.0183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203015947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:46 Heat of formation + Delta-G solvation = -73.668734 kcal Electronic energy + Delta-G solvation = -28003.229072 eV Core-core repulsion = 23893.580822 eV Total energy + Delta-G solvation = -4109.648250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.48898 -41.26161 -40.29852 -38.88232 -36.34635 -35.78555 -34.21731 -33.74833 -33.44250 -32.13986 -31.86379 -28.71993 -27.93013 -26.04468 -24.35251 -24.18969 -22.68721 -22.20248 -21.44296 -21.21062 -20.40109 -19.92636 -18.51485 -18.27065 -17.67791 -17.01761 -16.95184 -16.63659 -16.54045 -16.33159 -15.92909 -15.48768 -15.29934 -15.09341 -15.02512 -14.86370 -14.52411 -14.26898 -14.02680 -13.79190 -13.73382 -13.59254 -13.52552 -13.38794 -13.10266 -12.87058 -12.71532 -12.57946 -12.39553 -12.17905 -11.96310 -11.83330 -11.52614 -11.49540 -11.00452 -10.81530 -10.42004 -10.23519 -9.73160 -9.38970 -9.23027 -8.39959 -6.01303 0.75414 1.31400 1.38101 1.46801 1.53644 1.66339 1.96818 1.98233 2.23487 2.25025 2.74431 3.16577 3.40395 3.49135 3.66250 3.80809 3.97959 4.07300 4.13436 4.14593 4.17429 4.24969 4.34734 4.36524 4.42624 4.45846 4.51855 4.58900 4.67390 4.76842 4.82611 4.92067 4.93302 5.01218 5.04205 5.19912 5.22373 5.28727 5.54260 5.54910 5.62294 5.93440 6.12738 6.20455 6.34050 6.40999 6.61511 6.89891 7.09705 7.41684 7.99255 8.77821 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028444 B = 0.001798 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.140634 B =15570.260814 C =15715.987438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.226 1.226 7 C -0.330 4.330 8 H 0.052 0.948 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.618 6.618 12 C 0.065 3.935 13 N -0.686 5.686 14 C 0.091 3.909 15 C -0.115 4.115 16 C 0.117 3.883 17 N -0.607 5.607 18 C 0.512 3.488 19 O -0.584 6.584 20 C -0.056 4.056 21 C -0.019 4.019 22 C -0.210 4.210 23 C -0.228 4.228 24 C -0.047 4.047 25 O -0.197 6.197 26 C 0.108 3.892 27 C -0.165 4.165 28 H 0.279 0.721 29 H 0.391 0.609 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.342 0.658 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.131 0.869 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.232 0.768 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.113 -3.270 7.660 34.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.149 1.149 7 C -0.460 4.460 8 H 0.070 0.930 9 N -0.232 5.232 10 C 0.234 3.766 11 O -0.503 6.503 12 C -0.067 4.067 13 N -0.317 5.317 14 C -0.018 4.018 15 C -0.154 4.154 16 C -0.006 4.006 17 N -0.340 5.340 18 C 0.301 3.699 19 O -0.464 6.464 20 C -0.095 4.095 21 C -0.069 4.069 22 C -0.229 4.229 23 C -0.247 4.247 24 C -0.114 4.114 25 O -0.094 6.094 26 C -0.014 4.014 27 C -0.205 4.205 28 H 0.088 0.912 29 H 0.226 0.774 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.161 0.839 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.178 0.822 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.248 0.752 43 H 0.131 0.869 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 32.338 -4.511 6.730 33.337 hybrid contribution -0.312 0.617 0.649 0.948 sum 32.025 -3.894 7.379 33.094 Atomic orbital electron populations 1.69818 1.08274 1.29258 1.50318 1.26169 0.96488 1.02887 0.96010 0.85331 0.79602 0.76417 0.79930 1.18248 1.20193 1.14926 1.19003 0.81697 0.94833 1.50446 0.92988 1.42018 1.05682 1.07680 1.67808 1.21137 0.91306 0.83197 0.80977 1.90553 1.71563 1.32985 1.55178 1.21664 0.89001 0.91874 1.04197 1.60118 1.07968 1.12006 1.51586 1.21658 0.85636 0.98505 0.96012 1.21803 0.94227 0.97331 1.02060 1.21572 0.93020 1.02794 0.83216 1.48230 1.43741 1.25312 1.16677 1.20931 0.78564 0.81910 0.88516 1.90717 1.59655 1.29829 1.66201 1.20294 0.99536 0.96553 0.93076 1.22029 0.95064 0.88491 1.01294 1.21876 0.94110 1.01007 1.05885 1.22177 1.01401 0.96250 1.04894 1.24727 0.82953 0.98933 1.04796 1.83983 1.36929 1.27486 1.60966 1.21932 0.93368 0.87052 0.99025 1.22611 0.96701 1.03542 0.97658 0.91187 0.77354 0.89927 0.86659 0.83895 0.88279 0.90473 0.93506 0.89173 0.91012 0.85134 0.82209 0.82215 0.81539 0.75188 0.86873 0.88244 0.88806 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.11 13.96 21.66 0.30 -55.81 16 2 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 3 Si 0.97 37.56 27.73 68.60 1.90 39.46 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 5 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.23 -7.13 6.52 99.48 0.65 -6.48 16 7 C -0.33 -19.16 10.16 84.04 0.85 -18.31 16 8 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 9 N -0.59 -26.89 5.09 -306.98 -1.56 -28.46 16 10 C 0.45 19.38 7.82 87.66 0.69 20.06 16 11 O -0.62 -33.96 15.78 -3.06 -0.05 -34.01 16 12 C 0.06 1.75 5.96 85.56 0.51 2.26 16 13 N -0.69 -18.26 5.87 -495.44 -2.91 -21.17 16 14 C 0.09 1.56 2.43 44.94 0.11 1.67 16 15 C -0.12 -2.21 5.69 30.67 0.17 -2.03 16 16 C 0.12 1.96 6.44 86.36 0.56 2.52 16 17 N -0.61 -8.80 2.98 -819.73 -2.44 -11.24 16 18 C 0.51 9.69 7.69 87.66 0.67 10.37 16 19 O -0.58 -17.14 15.45 -3.01 -0.05 -17.19 16 20 C -0.06 -0.65 4.58 29.10 0.13 -0.52 16 21 C -0.02 -0.35 5.81 24.83 0.14 -0.20 16 22 C -0.21 -3.64 10.81 22.19 0.24 -3.40 16 23 C -0.23 -3.64 10.91 22.19 0.24 -3.40 16 24 C -0.05 -0.76 12.09 66.97 0.81 0.05 16 25 O -0.20 -4.20 10.65 -2.51 -0.03 -4.22 16 26 C 0.11 0.80 6.31 86.22 0.54 1.34 16 27 C -0.17 -1.98 5.32 30.53 0.16 -1.82 16 28 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.39 14.38 5.76 -92.71 -0.53 13.85 16 30 H 0.08 1.67 7.41 -2.39 -0.02 1.65 16 31 H 0.12 2.56 8.06 -2.38 -0.02 2.54 16 32 H 0.34 10.20 8.18 -89.69 -0.73 9.47 16 33 H 0.10 1.36 7.80 -2.38 -0.02 1.34 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.15 8.14 -2.38 -0.02 1.14 16 37 H 0.07 1.56 7.00 -2.39 -0.02 1.54 16 38 H 0.13 1.04 7.68 -2.39 -0.02 1.02 16 39 H 0.16 0.60 7.95 -2.39 -0.02 0.58 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.23 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.11 0.25 5.93 -2.39 -0.01 0.24 16 44 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.09 0.91 7.42 -2.39 -0.02 0.90 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -89.18 379.54 1.17 -88.00 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -0.31 Total: 36.53 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.31 Total: 8.11 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -6.61 Total: -116.68 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -0.12 Total: -55.42 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 1.90 Total: 39.46 kcal Total: -89.18 1.17 -88.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203015947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.336 kcal (2) G-P(sol) polarization free energy of solvation -89.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds