Wall clock time and date at job start Tue Mar 31 2020 18:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00496 * 2 1 4 4 H 1.48494 * 109.47250 * 270.00330 * 3 2 1 5 5 H 1.48506 * 109.46919 * 30.00257 * 3 2 1 6 6 H 1.48498 * 109.47477 * 150.00099 * 3 2 1 7 7 C 1.38817 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00354 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00305 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46441 * 204.99711 * 10 9 7 12 12 C 1.53193 * 109.31681 * 178.62401 * 11 10 9 13 13 N 1.46932 * 108.77190 * 54.63493 * 12 11 10 14 14 C 1.34775 * 120.62795 * 126.36980 * 13 12 11 15 15 O 1.21279 * 120.00058 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99892 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47135 * 179.97438 * 16 14 13 18 18 N 1.46504 * 109.47229 * 179.97438 * 17 16 14 19 19 C 1.34775 * 119.99986 * 179.97438 * 18 17 16 20 20 O 1.21697 * 120.00338 * 359.97438 * 19 18 17 21 21 C 1.46653 * 119.99833 * 180.02562 * 19 18 17 22 22 C 1.36544 * 125.98830 * 179.97438 * 21 19 18 23 23 C 1.40364 * 106.70997 * 179.70341 * 22 21 19 24 24 C 1.35135 * 107.11287 * 0.26719 * 23 22 21 25 25 O 1.33925 * 108.76694 * 359.97438 * 24 23 22 26 26 C 1.46927 * 118.73754 * 306.64515 * 13 12 11 27 27 C 1.52762 * 109.00670 * 53.31034 * 26 13 12 28 28 H 0.97004 * 120.00217 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00244 * 359.97438 * 9 7 2 30 30 H 1.09007 * 109.45881 * 324.97156 * 10 9 7 31 31 H 1.08998 * 109.49761 * 58.67339 * 11 10 9 32 32 H 1.09004 * 109.52599 * 298.59446 * 11 10 9 33 33 H 1.08997 * 109.59123 * 294.85269 * 12 11 10 34 34 H 1.09003 * 109.70624 * 174.48867 * 12 11 10 35 35 H 1.08995 * 109.47414 * 59.99824 * 16 14 13 36 36 H 1.09001 * 109.46678 * 299.99771 * 16 14 13 37 37 H 1.09004 * 109.46930 * 59.99939 * 17 16 14 38 38 H 1.09001 * 109.47185 * 299.99503 * 17 16 14 39 39 H 0.97001 * 119.99875 * 0.02562 * 18 17 16 40 40 H 1.08002 * 126.64784 * 359.97438 * 22 21 19 41 41 H 1.07997 * 126.44725 * 180.24400 * 23 22 21 42 42 H 1.08003 * 125.61584 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.58084 * 173.14545 * 26 13 12 44 44 H 1.09003 * 109.58537 * 293.56752 * 26 13 12 45 45 H 1.09008 * 109.56088 * 185.55016 * 27 26 13 46 46 H 1.08997 * 109.36222 * 65.50131 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0027 11 6 1.1801 -4.7517 -0.6134 12 6 1.9615 -6.0690 -0.6445 13 7 2.4408 -6.3666 0.7122 14 6 2.1718 -7.5539 1.2905 15 8 1.5281 -8.3886 0.6907 16 6 2.6700 -7.8438 2.6830 17 6 2.2303 -9.2488 3.0996 18 7 2.7151 -9.5309 4.4530 19 6 2.4453 -10.7179 5.0317 20 8 1.7987 -11.5552 4.4301 21 6 2.9301 -11.0001 6.3867 22 6 2.7288 -12.1551 7.0866 23 6 3.3684 -11.9929 8.3255 24 6 3.9200 -10.7593 8.3298 25 8 3.6512 -10.1630 7.1611 26 6 3.2136 -5.3428 1.4288 27 6 2.4229 -4.0358 1.4343 28 1 -0.4851 0.8401 0.0004 29 1 0.3554 -2.3881 -0.0016 30 1 2.9683 -3.5501 -0.5926 31 1 0.9012 -4.4702 -1.6288 32 1 0.2807 -4.8763 -0.0104 33 1 2.8118 -5.9738 -1.3197 34 1 1.3112 -6.8741 -0.9870 35 1 2.2549 -7.1129 3.3769 36 1 3.7582 -7.7834 2.6994 37 1 2.6451 -9.9800 2.4057 38 1 1.1421 -9.3088 3.0833 39 1 3.2296 -8.8632 4.9330 40 1 2.1866 -13.0264 6.7503 41 1 3.4112 -12.7176 9.1251 42 1 4.4846 -10.3256 9.1419 43 1 3.3873 -5.6677 2.4547 44 1 4.1682 -5.1871 0.9260 45 1 3.0286 -3.2447 1.8765 46 1 1.5121 -4.1669 2.0186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203625149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:26 Heat of formation + Delta-G solvation = -45.114617 kcal Electronic energy + Delta-G solvation = -27806.830749 eV Core-core repulsion = 23698.420698 eV Total energy + Delta-G solvation = -4108.410051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.10707 -40.32020 -39.63553 -37.54176 -35.59644 -34.54929 -33.52751 -32.35719 -31.69258 -30.80643 -29.91873 -29.18481 -25.61684 -24.48542 -23.11578 -22.97887 -22.28081 -22.05972 -20.84955 -20.28542 -19.18792 -18.56306 -17.44070 -17.08778 -16.82859 -16.72579 -16.14477 -15.93040 -15.59165 -15.02793 -14.87000 -14.49802 -14.00068 -13.86301 -13.79261 -13.53575 -13.52082 -13.44719 -13.27105 -13.08612 -13.00775 -12.50572 -12.14196 -11.88714 -11.77264 -11.62361 -11.01299 -10.92236 -10.86998 -10.71835 -10.53751 -10.51958 -10.27771 -9.89438 -9.81578 -9.71473 -9.56965 -9.10846 -8.96387 -8.57313 -7.03391 -5.82523 -3.12078 0.63506 1.91273 2.20892 2.56888 2.67541 2.81135 3.15089 3.38668 3.43660 3.45697 4.19291 4.40133 4.44933 4.49880 4.53074 4.61252 4.74389 4.95775 5.14969 5.17329 5.28056 5.28235 5.31952 5.34659 5.43079 5.48307 5.56907 5.57859 5.67175 5.68477 5.85599 5.88687 5.93328 5.95237 6.16944 6.30271 6.33438 6.35450 6.45130 6.54959 6.82908 6.97415 7.03809 7.42276 7.63171 7.68848 8.12936 8.35538 9.46814 10.04184 10.38686 11.39906 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.001882 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.851071 B =14872.001864 C =16019.068066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.604 5.604 14 C 0.519 3.481 15 O -0.545 6.545 16 C -0.154 4.154 17 C 0.134 3.866 18 N -0.721 5.721 19 C 0.603 3.397 20 O -0.515 6.515 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.226 4.226 24 C -0.006 4.006 25 O -0.165 6.165 26 C 0.106 3.894 27 C -0.152 4.152 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.406 0.594 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.211 0.789 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 -21.308 14.929 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.178 4.178 12 C -0.007 4.007 13 N -0.338 5.338 14 C 0.307 3.693 15 O -0.423 6.423 16 C -0.195 4.195 17 C 0.011 3.989 18 N -0.372 5.372 19 C 0.389 3.611 20 O -0.392 6.392 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.245 4.245 24 C -0.075 4.075 25 O -0.060 6.060 26 C -0.017 4.017 27 C -0.194 4.194 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.240 0.760 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.228 0.772 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.702 -21.866 14.011 27.723 hybrid contribution 0.460 1.356 0.607 1.555 sum 10.162 -20.510 14.618 27.159 Atomic orbital electron populations 1.69660 1.05135 1.25730 1.57412 1.24760 0.95506 0.97742 1.02899 0.86203 0.78613 0.83878 0.77542 1.21704 1.21793 1.20774 1.19224 0.90954 0.84085 1.43005 0.91160 1.42435 1.05821 0.99688 1.88487 1.20161 0.94483 0.86133 0.92389 1.22207 0.99206 0.94079 1.02319 1.21637 0.98807 0.98120 0.82131 1.48169 1.54029 1.14597 1.16963 1.20184 0.79896 0.81713 0.87557 1.90719 1.40348 1.46136 1.65132 1.21837 1.03465 0.98247 0.95903 1.21141 1.00874 0.95292 0.81607 1.45879 1.56519 1.16897 1.17887 1.16498 0.79749 0.82397 0.82483 1.90925 1.39464 1.46488 1.62338 1.22090 1.04672 0.92187 0.94241 1.22018 1.00289 0.98196 0.93499 1.21898 1.04240 0.98675 0.99669 1.24454 1.01767 0.93644 0.87673 1.84059 1.56129 1.41494 1.24298 1.21810 0.94740 0.88830 0.96304 1.22612 1.00117 0.94721 1.01918 0.93456 0.78245 0.93399 0.90499 0.91821 0.91511 0.89267 0.87887 0.88098 0.90028 0.89952 0.75970 0.82144 0.82504 0.77217 0.90504 0.91326 0.90529 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -17.27 5.12 -53.39 -0.27 -17.54 16 10 C 0.18 3.25 2.73 -67.89 -0.19 3.06 16 11 C -0.14 -2.21 5.55 -26.61 -0.15 -2.36 16 12 C 0.12 1.58 6.44 -3.71 -0.02 1.55 16 13 N -0.60 -7.68 2.98 -173.02 -0.52 -8.19 16 14 C 0.52 6.66 7.70 -10.98 -0.08 6.57 16 15 O -0.55 -8.94 15.39 5.56 0.09 -8.86 16 16 C -0.15 -1.33 4.16 -27.88 -0.12 -1.44 16 17 C 0.13 1.36 4.96 -4.04 -0.02 1.34 16 18 N -0.72 -6.31 5.55 -61.62 -0.34 -6.65 16 19 C 0.60 6.69 7.79 -12.87 -0.10 6.59 16 20 O -0.52 -7.54 16.87 5.19 0.09 -7.45 16 21 C -0.08 -0.75 7.13 -36.80 -0.26 -1.01 16 22 C -0.12 -1.00 10.62 -39.39 -0.42 -1.42 16 23 C -0.23 -1.33 10.88 -39.89 -0.43 -1.77 16 24 C -0.01 -0.03 12.08 29.63 0.36 0.33 16 25 O -0.16 -1.24 10.40 5.01 0.05 -1.19 16 26 C 0.11 1.20 6.31 -3.93 -0.02 1.18 16 27 C -0.15 -2.35 5.64 -26.83 -0.15 -2.50 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 30 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 35 H 0.10 0.75 7.68 -51.93 -0.40 0.35 16 36 H 0.10 0.63 7.95 -51.93 -0.41 0.22 16 37 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.41 2.49 8.23 -40.82 -0.34 2.15 16 40 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.21 0.21 8.06 -52.48 -0.42 -0.22 16 43 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -34.59 385.69 -8.00 -42.59 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.75 Total: 8.45 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.86 Total: 3.13 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.41 Total: -59.21 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.23 Total: -17.50 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.59 -8.00 -42.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203625149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.522 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds