Wall clock time and date at job start Tue Mar 31 2020 18:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00496 * 2 1 4 4 H 1.48494 * 109.47250 * 270.00330 * 3 2 1 5 5 H 1.48506 * 109.46919 * 30.00257 * 3 2 1 6 6 H 1.48498 * 109.47477 * 150.00099 * 3 2 1 7 7 C 1.38817 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00354 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00305 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46441 * 204.99711 * 10 9 7 12 12 C 1.53193 * 109.31681 * 178.62401 * 11 10 9 13 13 N 1.46932 * 108.77190 * 54.63493 * 12 11 10 14 14 C 1.34775 * 120.62795 * 126.36980 * 13 12 11 15 15 O 1.21279 * 120.00058 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99892 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47135 * 179.97438 * 16 14 13 18 18 N 1.46504 * 109.47229 * 179.97438 * 17 16 14 19 19 C 1.34775 * 119.99986 * 179.97438 * 18 17 16 20 20 O 1.21697 * 120.00338 * 359.97438 * 19 18 17 21 21 C 1.46653 * 119.99833 * 180.02562 * 19 18 17 22 22 C 1.36544 * 125.98830 * 179.97438 * 21 19 18 23 23 C 1.40364 * 106.70997 * 179.70341 * 22 21 19 24 24 C 1.35135 * 107.11287 * 0.26719 * 23 22 21 25 25 O 1.33925 * 108.76694 * 359.97438 * 24 23 22 26 26 C 1.46927 * 118.73754 * 306.64515 * 13 12 11 27 27 C 1.52762 * 109.00670 * 53.31034 * 26 13 12 28 28 H 0.97004 * 120.00217 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00244 * 359.97438 * 9 7 2 30 30 H 1.09007 * 109.45881 * 324.97156 * 10 9 7 31 31 H 1.08998 * 109.49761 * 58.67339 * 11 10 9 32 32 H 1.09004 * 109.52599 * 298.59446 * 11 10 9 33 33 H 1.08997 * 109.59123 * 294.85269 * 12 11 10 34 34 H 1.09003 * 109.70624 * 174.48867 * 12 11 10 35 35 H 1.08995 * 109.47414 * 59.99824 * 16 14 13 36 36 H 1.09001 * 109.46678 * 299.99771 * 16 14 13 37 37 H 1.09004 * 109.46930 * 59.99939 * 17 16 14 38 38 H 1.09001 * 109.47185 * 299.99503 * 17 16 14 39 39 H 0.97001 * 119.99875 * 0.02562 * 18 17 16 40 40 H 1.08002 * 126.64784 * 359.97438 * 22 21 19 41 41 H 1.07997 * 126.44725 * 180.24400 * 23 22 21 42 42 H 1.08003 * 125.61584 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.58084 * 173.14545 * 26 13 12 44 44 H 1.09003 * 109.58537 * 293.56752 * 26 13 12 45 45 H 1.09008 * 109.56088 * 185.55016 * 27 26 13 46 46 H 1.08997 * 109.36222 * 65.50131 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0027 11 6 1.1801 -4.7517 -0.6134 12 6 1.9615 -6.0690 -0.6445 13 7 2.4408 -6.3666 0.7122 14 6 2.1718 -7.5539 1.2905 15 8 1.5281 -8.3886 0.6907 16 6 2.6700 -7.8438 2.6830 17 6 2.2303 -9.2488 3.0996 18 7 2.7151 -9.5309 4.4530 19 6 2.4453 -10.7179 5.0317 20 8 1.7987 -11.5552 4.4301 21 6 2.9301 -11.0001 6.3867 22 6 2.7288 -12.1551 7.0866 23 6 3.3684 -11.9929 8.3255 24 6 3.9200 -10.7593 8.3298 25 8 3.6512 -10.1630 7.1611 26 6 3.2136 -5.3428 1.4288 27 6 2.4229 -4.0358 1.4343 28 1 -0.4851 0.8401 0.0004 29 1 0.3554 -2.3881 -0.0016 30 1 2.9683 -3.5501 -0.5926 31 1 0.9012 -4.4702 -1.6288 32 1 0.2807 -4.8763 -0.0104 33 1 2.8118 -5.9738 -1.3197 34 1 1.3112 -6.8741 -0.9870 35 1 2.2549 -7.1129 3.3769 36 1 3.7582 -7.7834 2.6994 37 1 2.6451 -9.9800 2.4057 38 1 1.1421 -9.3088 3.0833 39 1 3.2296 -8.8632 4.9330 40 1 2.1866 -13.0264 6.7503 41 1 3.4112 -12.7176 9.1251 42 1 4.4846 -10.3256 9.1419 43 1 3.3873 -5.6677 2.4547 44 1 4.1682 -5.1871 0.9260 45 1 3.0286 -3.2447 1.8765 46 1 1.5121 -4.1669 2.0186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203625149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:26 Heat of formation + Delta-G solvation = -70.464468 kcal Electronic energy + Delta-G solvation = -27807.930001 eV Core-core repulsion = 23698.420698 eV Total energy + Delta-G solvation = -4109.509303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.63171 -41.34155 -40.52490 -38.80659 -36.47409 -36.12930 -34.06619 -33.88536 -32.81653 -31.79408 -31.03825 -30.38548 -26.87123 -25.72551 -24.36588 -24.07015 -23.25705 -22.66008 -21.71994 -21.38880 -20.12362 -19.43488 -19.02342 -18.37838 -17.47276 -17.34888 -16.96145 -16.86621 -16.64917 -16.52977 -15.94665 -15.46896 -15.41423 -15.19841 -15.01891 -14.87860 -14.50952 -14.23688 -14.06657 -13.93307 -13.73233 -13.54818 -13.37947 -13.12874 -12.85011 -12.81883 -12.62325 -12.53569 -12.16506 -12.12584 -11.97238 -11.68460 -11.62286 -11.29030 -11.04908 -10.98169 -10.78222 -10.39408 -9.67413 -9.64114 -8.99258 -7.92070 -5.20702 0.01075 1.43125 1.49220 1.50556 1.54364 1.58586 1.59563 1.92311 2.05855 2.30333 2.57975 3.41193 3.48354 3.67421 3.77571 3.83648 3.95816 3.97348 4.03263 4.11010 4.13923 4.21542 4.35491 4.43311 4.48456 4.61942 4.67041 4.77624 4.82630 4.83614 4.86602 4.89641 4.92652 4.97058 5.05221 5.10243 5.16544 5.32766 5.39718 5.51621 5.56276 5.65320 5.82128 6.29430 6.35334 6.43487 6.94198 7.12979 7.35443 8.11981 8.34302 9.31619 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.001882 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.851071 B =14872.001864 C =16019.068066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.291 1.291 5 H -0.300 1.300 6 H -0.265 1.265 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.740 5.740 10 C 0.171 3.829 11 C -0.128 4.128 12 C 0.122 3.878 13 N -0.606 5.606 14 C 0.515 3.485 15 O -0.588 6.588 16 C -0.141 4.141 17 C 0.140 3.860 18 N -0.704 5.704 19 C 0.599 3.401 20 O -0.564 6.564 21 C -0.109 4.109 22 C -0.128 4.128 23 C -0.237 4.237 24 C 0.014 3.986 25 O -0.167 6.167 26 C 0.113 3.887 27 C -0.143 4.143 28 H 0.249 0.751 29 H 0.369 0.631 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.421 0.579 40 H 0.155 0.845 41 H 0.182 0.818 42 H 0.256 0.744 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.606 -21.427 17.312 30.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.227 1.227 6 H -0.189 1.189 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.379 5.379 10 C 0.063 3.937 11 C -0.167 4.167 12 C -0.001 4.001 13 N -0.338 5.338 14 C 0.304 3.696 15 O -0.469 6.469 16 C -0.181 4.181 17 C 0.016 3.984 18 N -0.355 5.355 19 C 0.387 3.613 20 O -0.445 6.445 21 C -0.161 4.161 22 C -0.148 4.148 23 C -0.256 4.256 24 C -0.055 4.055 25 O -0.062 6.062 26 C -0.009 4.009 27 C -0.184 4.184 28 H 0.057 0.943 29 H 0.200 0.800 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.259 0.741 40 H 0.173 0.827 41 H 0.199 0.801 42 H 0.272 0.728 43 H 0.135 0.865 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.070 -21.986 16.419 30.394 hybrid contribution -0.528 1.298 -0.078 1.404 sum 12.541 -20.688 16.342 29.194 Atomic orbital electron populations 1.69828 1.06743 1.25854 1.59970 1.25564 0.96290 1.01147 1.04215 0.85169 0.77856 0.79676 0.77249 1.21807 1.22748 1.18926 1.19647 0.91549 0.85010 1.40272 0.90082 1.42688 1.05369 1.01137 1.88667 1.20451 0.94216 0.84491 0.94558 1.22056 0.98589 0.94769 1.01310 1.21491 0.99036 0.96107 0.83499 1.48242 1.53978 1.15015 1.16553 1.20879 0.78957 0.81025 0.88724 1.90712 1.42201 1.47471 1.66471 1.21815 1.05649 0.97326 0.93275 1.20921 0.99330 0.96138 0.81981 1.45685 1.55940 1.16642 1.17265 1.16778 0.79098 0.82308 0.83122 1.90889 1.41801 1.48018 1.63803 1.21715 1.07070 0.93185 0.94140 1.22271 1.00047 0.97827 0.94695 1.22226 1.04189 0.99873 0.99271 1.25406 0.99828 0.93104 0.87153 1.84050 1.55875 1.41348 1.24975 1.21899 0.94097 0.86067 0.98821 1.22385 1.00070 0.96987 0.98912 0.94269 0.79980 0.93184 0.91322 0.93372 0.89725 0.90146 0.85508 0.84366 0.91784 0.92511 0.74085 0.82700 0.80108 0.72787 0.86459 0.89341 0.91253 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.91 13.06 21.65 0.28 -58.63 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.23 -12.28 9.93 84.04 0.83 -11.45 16 8 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -35.54 5.12 -322.82 -1.65 -37.19 16 10 C 0.17 6.08 2.73 45.02 0.12 6.20 16 11 C -0.13 -4.07 5.55 30.67 0.17 -3.90 16 12 C 0.12 3.18 6.44 86.36 0.56 3.74 16 13 N -0.61 -13.92 2.98 -819.70 -2.44 -16.36 16 14 C 0.51 12.27 7.70 87.66 0.67 12.94 16 15 O -0.59 -19.27 15.39 -3.03 -0.05 -19.32 16 16 C -0.14 -1.99 4.16 29.85 0.12 -1.87 16 17 C 0.14 2.76 4.96 86.38 0.43 3.19 16 18 N -0.70 -11.53 5.55 -467.10 -2.59 -14.12 16 19 C 0.60 13.46 7.79 86.44 0.67 14.13 16 20 O -0.56 -17.46 16.87 -4.34 -0.07 -17.54 16 21 C -0.11 -1.97 7.13 24.07 0.17 -1.80 16 22 C -0.13 -2.07 10.62 22.39 0.24 -1.83 16 23 C -0.24 -2.21 10.88 22.07 0.24 -1.97 16 24 C 0.01 0.10 12.08 67.10 0.81 0.91 16 25 O -0.17 -2.11 10.40 -5.00 -0.05 -2.16 16 26 C 0.11 2.11 6.31 86.22 0.54 2.66 16 27 C -0.14 -4.10 5.64 30.53 0.17 -3.93 16 28 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.37 19.65 7.80 -92.70 -0.72 18.93 16 30 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.29 7.00 -2.39 -0.02 2.27 16 35 H 0.13 1.29 7.68 -2.39 -0.02 1.27 16 36 H 0.14 1.01 7.95 -2.39 -0.02 0.99 16 37 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 38 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 39 H 0.42 4.06 8.23 -92.71 -0.76 3.30 16 40 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 41 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 42 H 0.26 -0.87 8.06 -2.91 -0.02 -0.90 16 43 H 0.12 1.31 5.93 -2.38 -0.01 1.30 16 44 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 46 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -79.74 385.69 1.21 -78.53 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.47 Total: 26.95 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.23 Total: 13.01 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -6.40 Total: -126.30 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.17 Total: -39.02 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -79.74 1.21 -78.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203625149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.067 kcal (2) G-P(sol) polarization free energy of solvation -79.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds