Wall clock time and date at job start Tue Mar 31 2020 18:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00230 * 2 1 4 4 H 1.48501 * 109.47511 * 240.00247 * 3 2 1 5 5 H 1.48503 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47332 * 119.99796 * 3 2 1 7 7 C 1.38822 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00040 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99864 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99833 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.53043 * 109.46000 * 174.99739 * 11 10 9 13 13 C 1.53200 * 109.31313 * 181.38604 * 12 11 10 14 14 N 1.46921 * 108.77325 * 305.36642 * 13 12 11 15 15 C 1.34775 * 120.62950 * 233.58327 * 14 13 12 16 16 O 1.21289 * 119.99908 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00429 * 179.97438 * 15 14 13 18 18 N 1.46493 * 109.47398 * 180.02562 * 17 15 14 19 19 C 1.34779 * 119.99945 * 180.02562 * 18 17 15 20 20 O 1.21696 * 120.00128 * 359.97438 * 19 18 17 21 21 C 1.46665 * 119.99984 * 180.02562 * 19 18 17 22 22 C 1.36545 * 125.98674 * 179.97438 * 21 19 18 23 23 C 1.40357 * 106.70827 * 179.73780 * 22 21 19 24 24 C 1.35139 * 107.11426 * 359.97438 * 23 22 21 25 25 O 1.33930 * 108.76462 * 0.02562 * 24 23 22 26 26 C 1.46929 * 118.74310 * 53.85888 * 14 13 12 27 27 C 1.53044 * 109.46272 * 295.06421 * 11 10 9 28 28 H 0.96997 * 119.99706 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99700 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47475 * 59.99559 * 10 9 7 31 31 H 1.09000 * 109.46775 * 299.99516 * 10 9 7 32 32 H 1.08998 * 109.46306 * 55.02452 * 11 10 9 33 33 H 1.09000 * 109.50001 * 61.43313 * 12 11 10 34 34 H 1.09001 * 109.52518 * 301.34993 * 12 11 10 35 35 H 1.08999 * 109.58464 * 185.57753 * 13 12 11 36 36 H 1.09000 * 109.70163 * 65.22273 * 13 12 11 37 37 H 1.09002 * 109.46676 * 60.00259 * 17 15 14 38 38 H 1.09001 * 109.47391 * 300.00788 * 17 15 14 39 39 H 0.96998 * 120.00157 * 0.02562 * 18 17 15 40 40 H 1.08000 * 126.64337 * 359.70047 * 22 21 19 41 41 H 1.08003 * 126.44764 * 179.97438 * 23 22 21 42 42 H 1.08003 * 125.61194 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.58512 * 65.92533 * 26 14 13 44 44 H 1.08994 * 109.58600 * 186.34945 * 26 14 13 45 45 H 1.08998 * 109.49815 * 298.56812 * 27 11 10 46 46 H 1.08999 * 109.49556 * 58.66313 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8251 -6.1414 -0.1281 13 6 0.8247 -7.3010 -0.1632 14 7 -0.0418 -7.2140 1.0201 15 6 -0.1840 -8.2694 1.8461 16 8 0.4067 -9.3035 1.6160 17 6 -1.0760 -8.1645 3.0562 18 7 -1.0608 -9.4347 3.7858 19 6 -1.7913 -9.5751 4.9097 20 8 -2.4631 -8.6465 5.3188 21 6 -1.7756 -10.8467 5.6405 22 6 -2.4649 -11.1220 6.7866 23 6 -2.1629 -12.4488 7.1303 24 6 -1.3136 -12.9196 6.1904 25 8 -1.0825 -11.9512 5.2946 26 6 -0.7552 -5.9566 1.2826 27 6 0.2673 -4.8103 1.3046 28 1 -0.4849 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0016 30 1 2.6841 -3.7150 0.8888 31 1 2.6853 -3.7141 -0.8912 32 1 0.3804 -4.7127 -0.8446 33 1 2.4906 -6.2608 0.7269 34 1 2.4109 -6.1383 -1.0473 35 1 1.3632 -8.2486 -0.1530 36 1 0.2177 -7.2355 -1.0662 37 1 -2.0941 -7.9396 2.7386 38 1 -0.7140 -7.3680 3.7065 39 1 -0.5250 -10.1748 3.4600 40 1 -3.1159 -10.4488 7.3247 41 1 -2.5385 -12.9916 7.9851 42 1 -0.8902 -13.9129 6.1663 43 1 -1.4881 -5.7811 0.4951 44 1 -1.2593 -6.0170 2.2470 45 1 0.9474 -4.9422 2.1461 46 1 -0.2561 -3.8595 1.4047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206912905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:10 Heat of formation + Delta-G solvation = -43.860453 kcal Electronic energy + Delta-G solvation = -28019.150502 eV Core-core repulsion = 23910.794836 eV Total energy + Delta-G solvation = -4108.355666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.07834 -40.65589 -39.52134 -37.86687 -35.08474 -34.92448 -33.45898 -32.98245 -31.42608 -30.60229 -30.34986 -28.30817 -26.46614 -24.01099 -23.42977 -23.15865 -22.17387 -21.74228 -20.75416 -20.38305 -19.52116 -18.76340 -17.37856 -16.99718 -16.80992 -16.76167 -16.27527 -16.07527 -15.54368 -14.93153 -14.76733 -14.52190 -14.23775 -13.98290 -13.80743 -13.57747 -13.53325 -13.41705 -13.29386 -13.08427 -12.81170 -12.71317 -12.45102 -12.27888 -11.86529 -11.23021 -11.02310 -10.83937 -10.75665 -10.48726 -10.47911 -10.43874 -10.35121 -10.08464 -9.98189 -9.67274 -9.65737 -9.09962 -8.88393 -8.78722 -6.93366 -5.78339 -3.06528 0.65161 1.93549 2.18268 2.28544 2.56246 2.80084 3.03274 3.43288 3.47850 3.48664 4.10128 4.26679 4.47809 4.57375 4.59864 4.76536 4.92673 4.95899 5.00072 5.03823 5.09834 5.20756 5.28908 5.34515 5.39861 5.47197 5.51706 5.58904 5.70653 5.79084 5.87949 5.88513 5.89188 6.04875 6.13623 6.22837 6.31454 6.39149 6.41564 6.57690 6.76687 6.88074 7.05556 7.14920 7.66283 7.68550 7.82440 8.41055 9.52193 10.09889 10.44516 11.44506 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021035 B = 0.001901 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.802559 B =14725.180859 C =15608.712750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.158 3.842 11 C -0.095 4.095 12 C -0.126 4.126 13 C 0.113 3.887 14 N -0.600 5.600 15 C 0.511 3.489 16 O -0.546 6.546 17 C 0.099 3.901 18 N -0.707 5.707 19 C 0.606 3.394 20 O -0.518 6.518 21 C -0.079 4.079 22 C -0.117 4.117 23 C -0.226 4.226 24 C -0.004 4.004 25 O -0.162 6.162 26 C 0.100 3.900 27 C -0.125 4.125 28 H 0.256 0.744 29 H 0.383 0.617 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.417 0.583 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.211 0.789 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 -26.775 9.322 28.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.114 4.114 12 C -0.165 4.165 13 C -0.009 4.009 14 N -0.333 5.333 15 C 0.298 3.702 16 O -0.424 6.424 17 C -0.028 4.028 18 N -0.362 5.362 19 C 0.392 3.608 20 O -0.396 6.396 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.246 4.246 24 C -0.074 4.074 25 O -0.057 6.057 26 C -0.023 4.023 27 C -0.164 4.164 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.255 0.745 40 H 0.180 0.820 41 H 0.175 0.825 42 H 0.228 0.772 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.184 -26.498 9.180 28.353 hybrid contribution 0.322 0.658 0.039 0.733 sum -3.863 -25.840 9.219 27.706 Atomic orbital electron populations 1.69636 1.05072 1.25775 1.57792 1.24729 0.95537 0.97664 1.03041 0.86267 0.78526 0.83550 0.77834 1.21310 1.21686 1.21303 1.19186 0.91009 0.84236 1.42699 0.91322 1.42357 1.05791 0.99949 1.89503 1.20664 0.93152 0.85368 0.97784 1.21318 0.97901 0.94439 0.97698 1.21918 0.97692 0.93985 1.02857 1.21683 0.92462 1.00257 0.86506 1.48103 1.46344 1.12846 1.26000 1.20357 0.82188 0.83576 0.84034 1.90683 1.48495 1.29142 1.74112 1.21207 1.01280 0.87577 0.92744 1.45594 1.48608 1.16289 1.25696 1.16475 0.79806 0.84630 0.79898 1.90917 1.42388 1.38627 1.67651 1.21954 1.02882 0.88068 1.00194 1.22009 0.99971 0.96664 0.95156 1.21894 1.03670 0.95933 1.03055 1.24471 0.99985 0.93644 0.89317 1.84094 1.56017 1.19686 1.45940 1.22105 0.95020 0.82957 1.02178 1.22011 0.97871 0.98163 0.98312 0.93470 0.78268 0.96434 0.96349 0.90864 0.91522 0.90483 0.89119 0.91185 0.87760 0.87601 0.74466 0.82047 0.82459 0.77224 0.90452 0.89690 0.91606 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.84 5.32 -59.91 -0.32 -18.16 16 10 C 0.16 3.03 5.65 -4.05 -0.02 3.01 16 11 C -0.09 -1.38 2.19 -90.58 -0.20 -1.58 16 12 C -0.13 -1.52 5.36 -26.61 -0.14 -1.66 16 13 C 0.11 1.25 6.43 -3.71 -0.02 1.23 16 14 N -0.60 -6.69 2.97 -172.50 -0.51 -7.20 16 15 C 0.51 5.97 7.77 -10.99 -0.09 5.89 16 16 O -0.55 -7.74 15.08 5.55 0.08 -7.66 16 17 C 0.10 0.99 4.50 -5.20 -0.02 0.97 16 18 N -0.71 -7.49 5.52 -62.81 -0.35 -7.84 16 19 C 0.61 7.03 7.79 -12.86 -0.10 6.93 16 20 O -0.52 -7.30 16.87 5.19 0.09 -7.21 16 21 C -0.08 -0.80 7.13 -36.79 -0.26 -1.06 16 22 C -0.12 -1.02 10.62 -39.40 -0.42 -1.44 16 23 C -0.23 -1.43 10.87 -39.89 -0.43 -1.87 16 24 C 0.00 -0.02 12.08 29.63 0.36 0.33 16 25 O -0.16 -1.43 10.40 5.02 0.05 -1.38 16 26 C 0.10 1.05 6.37 -3.49 -0.02 1.03 16 27 C -0.13 -1.70 5.26 -26.39 -0.14 -1.84 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.38 9.68 6.84 -40.82 -0.28 9.40 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.05 7.01 -51.93 -0.36 0.69 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.93 7.93 -51.93 -0.41 0.52 16 38 H 0.11 1.02 7.70 -51.93 -0.40 0.62 16 39 H 0.42 4.36 7.19 -40.82 -0.29 4.06 16 40 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.16 0.59 8.06 -52.48 -0.42 0.17 16 42 H 0.21 0.34 8.06 -52.48 -0.42 -0.08 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.44 7.15 -51.93 -0.37 1.07 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -33.97 382.79 -7.87 -41.84 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.62 Total: 8.93 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.76 Total: 2.67 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.45 Total: -60.18 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.22 Total: -16.25 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.97 -7.87 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206912905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.025 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds