Wall clock time and date at job start Tue Mar 31 2020 18:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00230 * 2 1 4 4 H 1.48501 * 109.47511 * 240.00247 * 3 2 1 5 5 H 1.48503 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47332 * 119.99796 * 3 2 1 7 7 C 1.38822 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00040 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99864 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99833 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.53043 * 109.46000 * 174.99739 * 11 10 9 13 13 C 1.53200 * 109.31313 * 181.38604 * 12 11 10 14 14 N 1.46921 * 108.77325 * 305.36642 * 13 12 11 15 15 C 1.34775 * 120.62950 * 233.58327 * 14 13 12 16 16 O 1.21289 * 119.99908 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00429 * 179.97438 * 15 14 13 18 18 N 1.46493 * 109.47398 * 180.02562 * 17 15 14 19 19 C 1.34779 * 119.99945 * 180.02562 * 18 17 15 20 20 O 1.21696 * 120.00128 * 359.97438 * 19 18 17 21 21 C 1.46665 * 119.99984 * 180.02562 * 19 18 17 22 22 C 1.36545 * 125.98674 * 179.97438 * 21 19 18 23 23 C 1.40357 * 106.70827 * 179.73780 * 22 21 19 24 24 C 1.35139 * 107.11426 * 359.97438 * 23 22 21 25 25 O 1.33930 * 108.76462 * 0.02562 * 24 23 22 26 26 C 1.46929 * 118.74310 * 53.85888 * 14 13 12 27 27 C 1.53044 * 109.46272 * 295.06421 * 11 10 9 28 28 H 0.96997 * 119.99706 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99700 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47475 * 59.99559 * 10 9 7 31 31 H 1.09000 * 109.46775 * 299.99516 * 10 9 7 32 32 H 1.08998 * 109.46306 * 55.02452 * 11 10 9 33 33 H 1.09000 * 109.50001 * 61.43313 * 12 11 10 34 34 H 1.09001 * 109.52518 * 301.34993 * 12 11 10 35 35 H 1.08999 * 109.58464 * 185.57753 * 13 12 11 36 36 H 1.09000 * 109.70163 * 65.22273 * 13 12 11 37 37 H 1.09002 * 109.46676 * 60.00259 * 17 15 14 38 38 H 1.09001 * 109.47391 * 300.00788 * 17 15 14 39 39 H 0.96998 * 120.00157 * 0.02562 * 18 17 15 40 40 H 1.08000 * 126.64337 * 359.70047 * 22 21 19 41 41 H 1.08003 * 126.44764 * 179.97438 * 23 22 21 42 42 H 1.08003 * 125.61194 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.58512 * 65.92533 * 26 14 13 44 44 H 1.08994 * 109.58600 * 186.34945 * 26 14 13 45 45 H 1.08998 * 109.49815 * 298.56812 * 27 11 10 46 46 H 1.08999 * 109.49556 * 58.66313 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8251 -6.1414 -0.1281 13 6 0.8247 -7.3010 -0.1632 14 7 -0.0418 -7.2140 1.0201 15 6 -0.1840 -8.2694 1.8461 16 8 0.4067 -9.3035 1.6160 17 6 -1.0760 -8.1645 3.0562 18 7 -1.0608 -9.4347 3.7858 19 6 -1.7913 -9.5751 4.9097 20 8 -2.4631 -8.6465 5.3188 21 6 -1.7756 -10.8467 5.6405 22 6 -2.4649 -11.1220 6.7866 23 6 -2.1629 -12.4488 7.1303 24 6 -1.3136 -12.9196 6.1904 25 8 -1.0825 -11.9512 5.2946 26 6 -0.7552 -5.9566 1.2826 27 6 0.2673 -4.8103 1.3046 28 1 -0.4849 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0016 30 1 2.6841 -3.7150 0.8888 31 1 2.6853 -3.7141 -0.8912 32 1 0.3804 -4.7127 -0.8446 33 1 2.4906 -6.2608 0.7269 34 1 2.4109 -6.1383 -1.0473 35 1 1.3632 -8.2486 -0.1530 36 1 0.2177 -7.2355 -1.0662 37 1 -2.0941 -7.9396 2.7386 38 1 -0.7140 -7.3680 3.7065 39 1 -0.5250 -10.1748 3.4600 40 1 -3.1159 -10.4488 7.3247 41 1 -2.5385 -12.9916 7.9851 42 1 -0.8902 -13.9129 6.1663 43 1 -1.4881 -5.7811 0.4951 44 1 -1.2593 -6.0170 2.2470 45 1 0.9474 -4.9422 2.1461 46 1 -0.2561 -3.8595 1.4047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206912905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:09 Heat of formation + Delta-G solvation = -67.686559 kcal Electronic energy + Delta-G solvation = -28020.183680 eV Core-core repulsion = 23910.794836 eV Total energy + Delta-G solvation = -4109.388844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.66233 -41.59011 -40.42738 -38.98562 -36.60632 -35.82476 -34.54528 -34.04345 -32.63876 -31.92007 -31.29129 -29.24642 -27.83859 -25.52051 -24.42708 -24.16724 -23.11385 -22.69671 -21.54560 -21.50314 -20.39521 -19.64399 -19.10825 -18.08028 -17.55507 -17.50871 -17.10278 -16.91716 -16.69340 -16.35869 -15.80606 -15.62710 -15.40846 -15.33159 -15.26200 -14.77539 -14.48410 -14.15214 -13.97717 -13.96619 -13.89685 -13.71507 -13.56637 -13.45673 -13.10591 -12.92011 -12.72126 -12.24049 -12.18388 -11.94854 -11.68062 -11.65993 -11.55807 -11.31745 -11.06261 -11.02769 -10.89176 -10.51280 -9.76185 -9.67745 -8.96786 -7.94072 -5.21633 -0.01995 1.35328 1.41344 1.45039 1.47941 1.50147 1.56351 1.84856 2.01926 2.23145 2.56922 3.22049 3.39270 3.66964 3.76581 3.79928 3.88957 3.94954 4.09251 4.10413 4.18416 4.23781 4.30533 4.36934 4.42054 4.59337 4.60712 4.72544 4.80052 4.84793 4.89792 4.93030 4.95744 4.96665 5.07106 5.09283 5.17888 5.27669 5.38600 5.47643 5.53334 5.55393 5.79945 6.20755 6.27582 6.28885 6.82133 6.90607 7.35731 8.12513 8.36442 9.28889 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021035 B = 0.001901 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.802559 B =14725.180859 C =15608.712750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.741 5.741 10 C 0.156 3.844 11 C -0.085 4.085 12 C -0.116 4.116 13 C 0.115 3.885 14 N -0.599 5.599 15 C 0.515 3.485 16 O -0.571 6.571 17 C 0.099 3.901 18 N -0.704 5.704 19 C 0.605 3.395 20 O -0.553 6.553 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.234 4.234 24 C 0.011 3.989 25 O -0.174 6.174 26 C 0.107 3.893 27 C -0.121 4.121 28 H 0.251 0.749 29 H 0.377 0.623 30 H 0.013 0.987 31 H 0.018 0.982 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.418 0.582 40 H 0.162 0.838 41 H 0.185 0.815 42 H 0.254 0.746 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.059 0.941 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 -28.676 9.708 30.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.385 5.385 10 C 0.029 3.971 11 C -0.104 4.104 12 C -0.154 4.154 13 C -0.006 4.006 14 N -0.331 5.331 15 C 0.303 3.697 16 O -0.451 6.451 17 C -0.027 4.027 18 N -0.358 5.358 19 C 0.393 3.607 20 O -0.433 6.433 21 C -0.166 4.166 22 C -0.141 4.141 23 C -0.253 4.253 24 C -0.058 4.058 25 O -0.070 6.070 26 C -0.015 4.015 27 C -0.159 4.159 28 H 0.060 0.940 29 H 0.209 0.791 30 H 0.031 0.969 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.256 0.744 40 H 0.180 0.820 41 H 0.202 0.798 42 H 0.270 0.730 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.078 0.922 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.814 -28.424 9.552 30.228 hybrid contribution 0.280 1.124 -0.045 1.159 sum -3.535 -27.300 9.506 29.123 Atomic orbital electron populations 1.69783 1.06387 1.26100 1.59366 1.25508 0.96416 1.00877 1.03745 0.85259 0.77258 0.79448 0.78070 1.20528 1.22074 1.20628 1.19576 0.91406 0.85604 1.41368 0.91087 1.42535 1.05684 1.00943 1.89303 1.20825 0.93948 0.85070 0.97213 1.21205 0.97082 0.93868 0.98222 1.21820 0.97642 0.92706 1.03251 1.21680 0.92428 0.99476 0.87059 1.48129 1.46215 1.12823 1.25893 1.20539 0.81872 0.83174 0.84137 1.90672 1.49601 1.30125 1.74748 1.21269 1.01681 0.87625 0.92129 1.45588 1.48283 1.16423 1.25493 1.16671 0.79217 0.84964 0.79816 1.90882 1.43913 1.39946 1.68589 1.21742 1.05175 0.88389 1.01274 1.22288 0.99245 0.97946 0.94596 1.22246 1.03884 0.94941 1.04182 1.25423 0.98463 0.94209 0.87742 1.84086 1.56125 1.19870 1.46908 1.22083 0.94112 0.81379 1.03911 1.21898 0.98194 0.98333 0.97495 0.93991 0.79076 0.96909 0.96398 0.90978 0.92051 0.89341 0.89261 0.89739 0.86386 0.87057 0.74379 0.82045 0.79776 0.72993 0.89199 0.87684 0.92195 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.04 13.06 21.65 0.28 -57.76 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.25 -13.73 9.99 84.04 0.84 -12.89 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -36.55 5.32 -343.46 -1.83 -38.38 16 10 C 0.16 5.97 5.65 86.38 0.49 6.46 16 11 C -0.08 -2.42 2.19 -10.77 -0.02 -2.44 16 12 C -0.12 -2.62 5.36 30.68 0.16 -2.45 16 13 C 0.12 2.36 6.43 86.37 0.56 2.91 16 14 N -0.60 -12.40 2.97 -818.07 -2.43 -14.83 16 15 C 0.51 11.41 7.77 87.66 0.68 12.10 16 16 O -0.57 -15.68 15.08 -3.06 -0.05 -15.72 16 17 C 0.10 1.91 4.50 85.63 0.39 2.30 16 18 N -0.70 -14.78 5.52 -470.84 -2.60 -17.38 16 19 C 0.61 14.23 7.79 86.44 0.67 14.90 16 20 O -0.55 -15.89 16.87 -4.34 -0.07 -15.96 16 21 C -0.11 -2.30 7.13 24.08 0.17 -2.13 16 22 C -0.12 -2.02 10.62 22.39 0.24 -1.78 16 23 C -0.23 -2.43 10.87 22.07 0.24 -2.19 16 24 C 0.01 0.10 12.08 67.11 0.81 0.91 16 25 O -0.17 -2.88 10.40 -4.95 -0.05 -2.93 16 26 C 0.11 2.10 6.37 86.51 0.55 2.65 16 27 C -0.12 -3.23 5.26 30.82 0.16 -3.07 16 28 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.38 19.39 6.84 -92.71 -0.63 18.75 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 1.92 7.01 -2.39 -0.02 1.90 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.12 1.96 7.93 -2.39 -0.02 1.94 16 38 H 0.11 2.04 7.70 -2.39 -0.02 2.03 16 39 H 0.42 8.67 7.19 -92.71 -0.67 8.00 16 40 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.25 -0.24 8.06 -2.91 -0.02 -0.27 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.10 1.67 5.93 -2.39 -0.01 1.65 16 45 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.07 2.14 7.15 -2.39 -0.02 2.12 16 Total: -1.00 -73.90 382.79 1.40 -72.49 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: -0.29 Total: 30.97 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 6.40 Total: 11.58 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -6.57 Total: -128.35 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.17 Total: -34.61 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -73.90 1.40 -72.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206912905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.805 kcal (2) G-P(sol) polarization free energy of solvation -73.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds