Wall clock time and date at job start Tue Mar 31 2020 18:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 119.99895 * 2 1 4 4 H 1.48505 * 109.47149 * 269.99777 * 3 2 1 5 5 H 1.48498 * 109.47388 * 29.99745 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00141 * 3 2 1 7 7 C 1.38953 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00237 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99358 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99848 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00026 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99978 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47109 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.50076 * 35.06192 * 14 13 12 16 16 C 1.53048 * 109.49493 * 155.16054 * 14 13 12 17 17 C 1.53042 * 109.53665 * 181.31311 * 16 14 13 18 18 C 1.53194 * 109.31489 * 298.63586 * 17 16 14 19 19 N 1.46922 * 108.77421 * 54.63715 * 18 17 16 20 20 C 1.34776 * 120.63494 * 126.40932 * 19 18 17 21 21 O 1.21278 * 120.00326 * 179.97438 * 20 19 18 22 22 C 1.50700 * 119.99447 * 359.97438 * 20 19 18 23 23 C 1.50706 * 109.46967 * 179.97438 * 22 20 19 24 24 C 1.34510 * 125.79109 * 89.99487 * 23 22 20 25 25 C 1.41382 * 106.84314 * 180.02562 * 24 23 22 26 26 C 1.34522 * 106.83898 * 0.02562 * 25 24 23 27 27 O 1.34299 * 125.78877 * 269.68903 * 23 22 20 28 28 C 1.46931 * 118.73852 * 306.38836 * 19 18 17 29 29 H 0.96997 * 120.00211 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00385 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.46894 * 60.00096 * 12 10 9 32 32 H 1.09004 * 109.47113 * 300.00247 * 12 10 9 33 33 H 1.00902 * 111.00068 * 56.04268 * 13 12 10 34 34 H 1.08991 * 109.45680 * 301.33627 * 16 14 13 35 35 H 1.08995 * 109.45774 * 61.29885 * 16 14 13 36 36 H 1.09000 * 109.49412 * 178.68140 * 17 16 14 37 37 H 1.08998 * 109.52054 * 58.60563 * 17 16 14 38 38 H 1.08993 * 109.58415 * 294.84801 * 18 17 16 39 39 H 1.09000 * 109.70343 * 174.48802 * 18 17 16 40 40 H 1.09005 * 109.46683 * 299.98988 * 22 20 19 41 41 H 1.08995 * 109.47594 * 59.99494 * 22 20 19 42 42 H 1.08002 * 126.58350 * 0.03473 * 24 23 22 43 43 H 1.07995 * 126.58485 * 179.97438 * 25 24 23 44 44 H 1.07993 * 125.78811 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.58700 * 293.82489 * 28 19 18 46 46 H 1.09000 * 109.58608 * 173.39906 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0017 14 6 7.5188 -3.7947 0.0011 15 1 7.9052 -2.9634 0.5906 16 6 7.9948 -5.1168 0.6077 17 6 9.5246 -5.1448 0.6376 18 6 10.0613 -5.0488 -0.7941 19 7 9.4920 -3.8547 -1.4333 20 6 10.2931 -2.9340 -2.0052 21 8 9.8109 -1.9528 -2.5301 22 6 11.7880 -3.1238 -1.9923 23 6 12.4478 -1.9633 -2.6917 24 6 12.8521 -0.8204 -2.1090 25 6 13.4118 -0.0165 -3.1285 26 6 13.3154 -0.7160 -4.2734 27 8 12.7370 -1.8972 -4.0015 28 6 8.0327 -3.6835 -1.4378 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 -0.0004 31 1 5.9240 -1.8560 0.8905 32 1 5.9240 -1.8575 -0.8894 33 1 5.6748 -4.2723 -0.7794 34 1 7.6099 -5.2097 1.6232 35 1 7.6282 -5.9464 0.0033 36 1 9.8626 -6.0765 1.0912 37 1 9.8930 -4.3013 1.2215 38 1 9.7695 -5.9373 -1.3539 39 1 11.1482 -4.9697 -0.7746 40 1 12.1389 -3.1743 -0.9615 41 1 12.0412 -4.0500 -2.5082 42 1 12.7660 -0.5658 -1.0630 43 1 13.8347 0.9702 -3.0108 44 1 13.6518 -0.3863 -5.2452 45 1 7.5755 -4.4607 -2.0502 46 1 7.7811 -2.7025 -1.8408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210243616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:59 Heat of formation + Delta-G solvation = -44.390414 kcal Electronic energy + Delta-G solvation = -28416.206198 eV Core-core repulsion = 24307.827551 eV Total energy + Delta-G solvation = -4108.378647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.82913 -40.52894 -38.62014 -37.78897 -35.27575 -33.91266 -33.46033 -32.71155 -32.38767 -31.64747 -30.07915 -27.73948 -26.37191 -25.36662 -23.97773 -22.53965 -22.02997 -21.45749 -20.64391 -19.50758 -19.25374 -18.31135 -17.77600 -17.58630 -16.39012 -16.30191 -15.90359 -15.74323 -15.26318 -14.87166 -14.79121 -14.64438 -14.53100 -14.07375 -13.75861 -13.66404 -13.40275 -13.12958 -13.08686 -13.01565 -12.93516 -12.72362 -12.48860 -12.15349 -12.05763 -11.78663 -11.60590 -11.22415 -11.16771 -11.11550 -10.83056 -10.56977 -10.21969 -10.13006 -9.95747 -9.55544 -9.12302 -8.74265 -8.57478 -8.18153 -8.12208 -6.29591 -3.80916 1.41365 2.27364 2.30917 2.57565 2.82307 3.05667 3.10026 3.17636 3.75212 3.98668 4.10326 4.12614 4.25299 4.51438 4.55814 4.62361 4.66986 4.70964 4.73870 4.85934 4.91744 4.92975 4.99025 5.14703 5.22142 5.32774 5.43032 5.52632 5.52921 5.56853 5.63145 5.64174 5.72204 5.80405 5.85164 5.93042 6.02811 6.09205 6.13453 6.22988 6.85426 7.01056 7.06179 7.50950 7.59615 7.83533 8.15796 8.61130 8.96299 9.44078 9.83855 10.83466 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.002520 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.047667 B =11106.980620 C =13030.054296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.045 3.955 13 N -0.656 5.656 14 C 0.076 3.924 15 H 0.081 0.919 16 C -0.108 4.108 17 C -0.134 4.134 18 C 0.103 3.897 19 N -0.608 5.608 20 C 0.513 3.487 21 O -0.526 6.526 22 C -0.059 4.059 23 C 0.002 3.998 24 C -0.194 4.194 25 C -0.213 4.213 26 C -0.037 4.037 27 O -0.173 6.173 28 C 0.080 3.920 29 H 0.273 0.727 30 H 0.371 0.629 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.352 0.648 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.203 0.797 45 H 0.071 0.929 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.668 -6.600 -2.921 32.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.236 3.764 11 O -0.447 6.447 12 C -0.088 4.088 13 N -0.287 5.287 14 C -0.036 4.036 15 H 0.099 0.901 16 C -0.147 4.147 17 C -0.173 4.173 18 C -0.020 4.020 19 N -0.342 5.342 20 C 0.300 3.700 21 O -0.402 6.402 22 C -0.098 4.098 23 C -0.049 4.049 24 C -0.214 4.214 25 C -0.233 4.233 26 C -0.105 4.105 27 O -0.069 6.069 28 C -0.044 4.044 29 H 0.084 0.916 30 H 0.204 0.796 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.172 0.828 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.219 0.781 45 H 0.089 0.911 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 30.629 -6.958 -2.728 31.528 hybrid contribution 0.796 1.964 -0.802 2.266 sum 31.425 -4.994 -3.531 32.015 Atomic orbital electron populations 1.69621 1.05635 1.27503 1.49363 1.25038 0.95500 0.97988 0.97614 0.86678 0.79811 0.84021 0.78950 1.19602 1.20143 1.19453 1.19431 0.79218 0.96629 1.48063 0.86257 1.42213 1.07562 1.06194 1.66966 1.19671 0.88111 0.84579 0.84043 1.90563 1.69427 1.30910 1.53843 1.21787 0.95147 0.90369 1.01468 1.60257 1.04611 1.12745 1.51119 1.21975 0.88365 0.99041 0.94196 0.90117 1.21503 0.93676 0.96907 1.02567 1.21936 0.96708 1.02908 0.95753 1.21862 0.98459 0.87657 0.93989 1.48051 1.06836 1.22468 1.56881 1.20418 0.88516 0.82675 0.78352 1.90768 1.76290 1.29027 1.44065 1.20117 0.91733 0.96236 1.01738 1.21461 1.03591 0.98238 0.81569 1.21535 1.04801 0.94053 1.00980 1.21819 1.06712 1.02012 0.92709 1.24013 1.01614 0.84332 1.00542 1.83978 1.61175 1.35822 1.25916 1.22578 0.79200 1.03755 0.98850 0.91616 0.79649 0.89407 0.93512 0.82781 0.90373 0.91475 0.90157 0.91325 0.90816 0.89725 0.85855 0.87047 0.83578 0.83405 0.78069 0.91103 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.07 13.96 55.50 0.77 -25.30 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.86 27.74 -169.99 -4.71 15.14 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 7 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 9 N -0.59 -14.37 5.09 -10.96 -0.06 -14.43 16 10 C 0.45 10.37 7.82 -10.98 -0.09 10.28 16 11 O -0.57 -15.25 15.78 5.54 0.09 -15.17 16 12 C 0.05 0.76 5.97 -4.97 -0.03 0.73 16 13 N -0.66 -9.85 5.88 -107.86 -0.63 -10.48 16 14 C 0.08 0.85 2.62 -67.59 -0.18 0.68 16 15 H 0.08 0.95 7.80 -51.93 -0.41 0.55 16 16 C -0.11 -0.96 5.49 -26.69 -0.15 -1.11 16 17 C -0.13 -0.79 6.08 -26.61 -0.16 -0.95 16 18 C 0.10 0.56 6.34 -3.71 -0.02 0.54 16 19 N -0.61 -5.58 2.97 -172.77 -0.51 -6.10 16 20 C 0.51 5.62 7.69 -10.99 -0.08 5.54 16 21 O -0.53 -8.35 15.45 5.56 0.09 -8.27 16 22 C -0.06 -0.42 4.58 -29.03 -0.13 -0.56 16 23 C 0.00 0.02 5.81 -35.62 -0.21 -0.19 16 24 C -0.19 -1.94 10.81 -39.70 -0.43 -2.36 16 25 C -0.21 -1.95 10.91 -39.70 -0.43 -2.39 16 26 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 27 O -0.17 -1.91 10.65 5.72 0.06 -1.85 16 28 C 0.08 0.89 5.69 -3.71 -0.02 0.87 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.37 8.02 5.76 -40.82 -0.24 7.78 16 31 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 32 H 0.05 0.73 7.56 -51.93 -0.39 0.33 16 33 H 0.35 5.46 8.11 -39.29 -0.32 5.14 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.24 5.93 -51.93 -0.31 -0.06 16 40 H 0.12 0.51 7.70 -51.93 -0.40 0.12 16 41 H 0.11 0.55 7.94 -51.93 -0.41 0.14 16 42 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 46 H 0.09 1.26 6.48 -51.93 -0.34 0.93 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -37.37 379.75 -7.59 -44.96 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.58 Total: 12.50 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.82 Total: 3.26 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.43 Total: -56.31 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: 0.23 Total: -25.28 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.71 Total: 15.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.37 -7.59 -44.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210243616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.572 kcal (2) G-P(sol) polarization free energy of solvation -37.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds