Wall clock time and date at job start Tue Mar 31 2020 18:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 119.99895 * 2 1 4 4 H 1.48505 * 109.47149 * 269.99777 * 3 2 1 5 5 H 1.48498 * 109.47388 * 29.99745 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00141 * 3 2 1 7 7 C 1.38953 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00237 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99358 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99848 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00026 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99978 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47109 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.50076 * 35.06192 * 14 13 12 16 16 C 1.53048 * 109.49493 * 155.16054 * 14 13 12 17 17 C 1.53042 * 109.53665 * 181.31311 * 16 14 13 18 18 C 1.53194 * 109.31489 * 298.63586 * 17 16 14 19 19 N 1.46922 * 108.77421 * 54.63715 * 18 17 16 20 20 C 1.34776 * 120.63494 * 126.40932 * 19 18 17 21 21 O 1.21278 * 120.00326 * 179.97438 * 20 19 18 22 22 C 1.50700 * 119.99447 * 359.97438 * 20 19 18 23 23 C 1.50706 * 109.46967 * 179.97438 * 22 20 19 24 24 C 1.34510 * 125.79109 * 89.99487 * 23 22 20 25 25 C 1.41382 * 106.84314 * 180.02562 * 24 23 22 26 26 C 1.34522 * 106.83898 * 0.02562 * 25 24 23 27 27 O 1.34299 * 125.78877 * 269.68903 * 23 22 20 28 28 C 1.46931 * 118.73852 * 306.38836 * 19 18 17 29 29 H 0.96997 * 120.00211 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00385 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.46894 * 60.00096 * 12 10 9 32 32 H 1.09004 * 109.47113 * 300.00247 * 12 10 9 33 33 H 1.00902 * 111.00068 * 56.04268 * 13 12 10 34 34 H 1.08991 * 109.45680 * 301.33627 * 16 14 13 35 35 H 1.08995 * 109.45774 * 61.29885 * 16 14 13 36 36 H 1.09000 * 109.49412 * 178.68140 * 17 16 14 37 37 H 1.08998 * 109.52054 * 58.60563 * 17 16 14 38 38 H 1.08993 * 109.58415 * 294.84801 * 18 17 16 39 39 H 1.09000 * 109.70343 * 174.48802 * 18 17 16 40 40 H 1.09005 * 109.46683 * 299.98988 * 22 20 19 41 41 H 1.08995 * 109.47594 * 59.99494 * 22 20 19 42 42 H 1.08002 * 126.58350 * 0.03473 * 24 23 22 43 43 H 1.07995 * 126.58485 * 179.97438 * 25 24 23 44 44 H 1.07993 * 125.78811 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.58700 * 293.82489 * 28 19 18 46 46 H 1.09000 * 109.58608 * 173.39906 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0017 14 6 7.5188 -3.7947 0.0011 15 1 7.9052 -2.9634 0.5906 16 6 7.9948 -5.1168 0.6077 17 6 9.5246 -5.1448 0.6376 18 6 10.0613 -5.0488 -0.7941 19 7 9.4920 -3.8547 -1.4333 20 6 10.2931 -2.9340 -2.0052 21 8 9.8109 -1.9528 -2.5301 22 6 11.7880 -3.1238 -1.9923 23 6 12.4478 -1.9633 -2.6917 24 6 12.8521 -0.8204 -2.1090 25 6 13.4118 -0.0165 -3.1285 26 6 13.3154 -0.7160 -4.2734 27 8 12.7370 -1.8972 -4.0015 28 6 8.0327 -3.6835 -1.4378 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 -0.0004 31 1 5.9240 -1.8560 0.8905 32 1 5.9240 -1.8575 -0.8894 33 1 5.6748 -4.2723 -0.7794 34 1 7.6099 -5.2097 1.6232 35 1 7.6282 -5.9464 0.0033 36 1 9.8626 -6.0765 1.0912 37 1 9.8930 -4.3013 1.2215 38 1 9.7695 -5.9373 -1.3539 39 1 11.1482 -4.9697 -0.7746 40 1 12.1389 -3.1743 -0.9615 41 1 12.0412 -4.0500 -2.5082 42 1 12.7660 -0.5658 -1.0630 43 1 13.8347 0.9702 -3.0108 44 1 13.6518 -0.3863 -5.2452 45 1 7.5755 -4.4607 -2.0502 46 1 7.7811 -2.7025 -1.8408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210243616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:58 Heat of formation + Delta-G solvation = -73.632625 kcal Electronic energy + Delta-G solvation = -28417.474235 eV Core-core repulsion = 24307.827551 eV Total energy + Delta-G solvation = -4109.646684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.49141 -41.32466 -40.33841 -38.83531 -36.44354 -35.84109 -34.15600 -33.79804 -33.46192 -33.01057 -31.06460 -28.59072 -27.77354 -26.07454 -25.63185 -23.36851 -22.70112 -22.21451 -21.49519 -21.22972 -20.38080 -19.97099 -18.48873 -18.28305 -17.78234 -17.27901 -16.98376 -16.70763 -16.56517 -16.22192 -15.96713 -15.57857 -15.37707 -15.12504 -15.06936 -14.67255 -14.48928 -14.28021 -14.18578 -13.95848 -13.75111 -13.74637 -13.56467 -13.42995 -13.28303 -12.92755 -12.71071 -12.45066 -12.32996 -12.01897 -11.89292 -11.80897 -11.60088 -11.55475 -11.04629 -10.82740 -10.48483 -10.28562 -9.94851 -9.40710 -9.26705 -8.44557 -6.05220 0.74287 1.27595 1.32048 1.40782 1.51983 1.63860 1.89590 1.93637 2.18968 2.19525 2.67375 3.11488 3.32113 3.48074 3.68533 3.78149 3.95674 4.03435 4.09119 4.13457 4.14393 4.14751 4.27764 4.30537 4.35012 4.41783 4.45168 4.55986 4.71757 4.75567 4.82473 4.91695 4.96554 5.00702 5.13611 5.22253 5.31305 5.35410 5.47194 5.50422 5.60814 5.87115 5.99145 6.19304 6.28469 6.34580 6.55546 6.83844 7.07754 7.35264 7.90514 8.72921 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.002520 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.047667 B =11106.980620 C =13030.054296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.961 3.039 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.235 1.235 7 C -0.329 4.329 8 H 0.058 0.942 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.611 6.611 12 C 0.060 3.940 13 N -0.669 5.669 14 C 0.082 3.918 15 H 0.079 0.921 16 C -0.107 4.107 17 C -0.126 4.126 18 C 0.097 3.903 19 N -0.602 5.602 20 C 0.508 3.492 21 O -0.586 6.586 22 C -0.051 4.051 23 C -0.018 4.018 24 C -0.212 4.212 25 C -0.231 4.231 26 C -0.045 4.045 27 O -0.194 6.194 28 C 0.085 3.915 29 H 0.280 0.720 30 H 0.388 0.612 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.346 0.654 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.160 0.840 41 H 0.140 0.860 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.233 0.767 45 H 0.072 0.928 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.874 -6.150 -2.353 36.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.212 4.212 3 Si 0.782 3.218 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.158 1.158 7 C -0.458 4.458 8 H 0.076 0.924 9 N -0.233 5.233 10 C 0.238 3.762 11 O -0.495 6.495 12 C -0.072 4.072 13 N -0.300 5.300 14 C -0.028 4.028 15 H 0.098 0.902 16 C -0.145 4.145 17 C -0.165 4.165 18 C -0.024 4.024 19 N -0.335 5.335 20 C 0.297 3.703 21 O -0.466 6.466 22 C -0.090 4.090 23 C -0.068 4.068 24 C -0.232 4.232 25 C -0.250 4.250 26 C -0.112 4.112 27 O -0.090 6.090 28 C -0.040 4.040 29 H 0.089 0.911 30 H 0.224 0.776 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.166 0.834 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.139 0.861 40 H 0.178 0.822 41 H 0.157 0.843 42 H 0.175 0.825 43 H 0.183 0.817 44 H 0.249 0.751 45 H 0.091 0.909 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 34.883 -6.556 -2.131 35.558 hybrid contribution -0.562 1.686 -0.988 2.033 sum 34.322 -4.870 -3.119 34.805 Atomic orbital electron populations 1.69791 1.07986 1.29265 1.50153 1.26068 0.96467 1.02537 0.96079 0.85411 0.79476 0.77092 0.79868 1.18393 1.19615 1.15812 1.19020 0.81342 0.95034 1.50373 0.92357 1.42063 1.05971 1.07580 1.67682 1.20857 0.90731 0.83374 0.81256 1.90538 1.71268 1.32595 1.55102 1.21666 0.89925 0.92224 1.03402 1.60322 1.07149 1.11443 1.51106 1.22019 0.85792 1.00568 0.94430 0.90233 1.21507 0.96232 0.95204 1.01534 1.21915 0.93866 1.04433 0.96236 1.22222 1.00480 0.86321 0.93397 1.48147 1.05742 1.23248 1.56376 1.21105 0.90087 0.81819 0.77244 1.90741 1.77529 1.31564 1.46782 1.20284 0.88448 0.96370 1.03883 1.22022 1.03894 0.99416 0.81443 1.21881 1.05042 0.94388 1.01848 1.22181 1.07037 1.02919 0.92848 1.24718 1.00881 0.83685 1.01920 1.83969 1.61673 1.36797 1.26605 1.22336 0.81023 1.02222 0.98455 0.91063 0.77625 0.87065 0.91601 0.83430 0.91426 0.91511 0.87535 0.91071 0.89663 0.86093 0.82225 0.84259 0.82497 0.81744 0.75066 0.90948 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.96 21.66 0.30 -56.72 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 3 Si 0.96 40.31 27.74 68.60 1.90 42.22 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.23 -8.47 6.52 99.48 0.65 -7.82 16 7 C -0.33 -19.71 10.16 84.04 0.85 -18.86 16 8 H 0.06 4.13 7.39 -2.91 -0.02 4.10 16 9 N -0.59 -29.05 5.09 -306.98 -1.56 -30.61 16 10 C 0.45 21.04 7.82 87.66 0.69 21.73 16 11 O -0.61 -34.39 15.78 -3.08 -0.05 -34.44 16 12 C 0.06 1.98 5.97 85.56 0.51 2.49 16 13 N -0.67 -19.76 5.88 -495.16 -2.91 -22.67 16 14 C 0.08 1.74 2.62 45.00 0.12 1.86 16 15 H 0.08 1.71 7.80 -2.39 -0.02 1.69 16 16 C -0.11 -1.66 5.49 30.62 0.17 -1.49 16 17 C -0.13 -0.98 6.08 30.67 0.19 -0.79 16 18 C 0.10 0.65 6.34 86.36 0.55 1.20 16 19 N -0.60 -9.62 2.97 -818.90 -2.43 -12.05 16 20 C 0.51 10.19 7.69 87.66 0.67 10.87 16 21 O -0.59 -18.55 15.45 -3.02 -0.05 -18.60 16 22 C -0.05 -0.58 4.58 29.10 0.13 -0.44 16 23 C -0.02 -0.33 5.81 24.83 0.14 -0.19 16 24 C -0.21 -3.95 10.81 22.19 0.24 -3.71 16 25 C -0.23 -3.96 10.91 22.19 0.24 -3.72 16 26 C -0.05 -0.74 12.09 66.97 0.81 0.07 16 27 O -0.19 -4.07 10.65 -2.44 -0.03 -4.09 16 28 C 0.08 1.81 5.69 86.36 0.49 2.30 16 29 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.39 16.13 5.76 -92.71 -0.53 15.59 16 31 H 0.11 3.18 8.06 -2.39 -0.02 3.16 16 32 H 0.07 1.95 7.56 -2.38 -0.02 1.93 16 33 H 0.35 10.86 8.11 -89.69 -0.73 10.14 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.12 0.00 5.93 -2.39 -0.01 -0.01 16 40 H 0.16 0.57 7.70 -2.38 -0.02 0.56 16 41 H 0.14 0.79 7.94 -2.39 -0.02 0.77 16 42 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 44 H 0.23 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.07 1.50 8.04 -2.38 -0.02 1.48 16 46 H 0.06 1.75 6.48 -2.39 -0.02 1.73 16 Total: -1.00 -89.24 379.75 1.15 -88.09 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.30 Total: 37.80 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.27 Total: 11.07 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -6.60 Total: -122.05 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -0.12 Total: -57.13 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.90 Total: 42.22 kcal Total: -89.24 1.15 -88.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210243616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.460 kcal (2) G-P(sol) polarization free energy of solvation -89.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds