Wall clock time and date at job start Tue Mar 31 2020 18:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48495 * 109.47142 * 239.99872 * 3 2 1 5 5 H 1.48499 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47332 * 119.99969 * 3 2 1 7 7 C 1.38817 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00254 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99535 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99678 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.52589 * 34.91646 * 10 9 7 12 12 C 1.53036 * 109.49830 * 155.00142 * 10 9 7 13 13 C 1.53045 * 109.53995 * 181.31580 * 12 10 9 14 14 C 1.53191 * 109.31061 * 298.63600 * 13 12 10 15 15 N 1.46924 * 108.77693 * 54.63266 * 14 13 12 16 16 C 1.34773 * 120.63180 * 126.37172 * 15 14 13 17 17 O 1.21283 * 120.00360 * 179.72484 * 16 15 14 18 18 C 1.50706 * 120.00081 * 359.97438 * 16 15 14 19 19 C 1.52998 * 109.47348 * 179.72561 * 18 16 15 20 20 N 1.46496 * 109.47238 * 179.97438 * 19 18 16 21 21 C 1.34769 * 120.00209 * 179.97438 * 20 19 18 22 22 O 1.21691 * 120.00116 * 0.02562 * 21 20 19 23 23 C 1.46666 * 120.00118 * 179.97438 * 21 20 19 24 24 C 1.36546 * 125.98647 * 180.02562 * 23 21 20 25 25 C 1.40364 * 106.70707 * 179.97438 * 24 23 21 26 26 C 1.35136 * 107.11233 * 359.97438 * 25 24 23 27 27 O 1.33932 * 108.76958 * 359.77638 * 26 25 24 28 28 C 1.46931 * 118.74139 * 306.64213 * 15 14 13 29 29 H 0.97002 * 120.00013 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00699 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.46377 * 61.29370 * 12 10 9 32 32 H 1.09005 * 109.44856 * 301.32559 * 12 10 9 33 33 H 1.08990 * 109.49843 * 178.68071 * 13 12 10 34 34 H 1.09006 * 109.49499 * 58.58279 * 13 12 10 35 35 H 1.08999 * 109.58467 * 294.84696 * 14 13 12 36 36 H 1.08996 * 109.70609 * 174.48858 * 14 13 12 37 37 H 1.09001 * 109.46564 * 299.73030 * 18 16 15 38 38 H 1.08998 * 109.47012 * 59.72084 * 18 16 15 39 39 H 1.09000 * 109.46986 * 300.00089 * 19 18 16 40 40 H 1.09002 * 109.46857 * 60.00224 * 19 18 16 41 41 H 0.97005 * 119.99809 * 0.02562 * 20 19 18 42 42 H 1.07996 * 126.64442 * 0.02562 * 24 23 21 43 43 H 1.07997 * 126.44102 * 180.02562 * 25 24 23 44 44 H 1.07995 * 125.61116 * 180.02562 * 26 25 24 45 45 H 1.08995 * 109.59030 * 173.14421 * 28 15 14 46 46 H 1.08998 * 109.58220 * 293.57198 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9693 -3.5509 0.5904 12 6 1.1807 -4.7526 0.6111 13 6 1.9568 -6.0713 0.6429 14 6 2.3179 -6.4811 -0.7884 15 7 3.0375 -5.3727 -1.4304 16 6 4.2409 -5.5750 -2.0024 17 8 4.8226 -4.6528 -2.5336 18 6 4.8614 -6.9483 -1.9868 19 6 6.2127 -6.9057 -2.7029 20 7 6.8161 -8.2405 -2.6872 21 6 8.0168 -8.4441 -3.2643 22 8 8.6001 -7.5191 -3.7981 23 6 8.6211 -9.7804 -3.2480 24 6 9.8258 -10.1228 -3.7921 25 6 10.0053 -11.4928 -3.5449 26 6 8.9164 -11.9210 -2.8689 27 8 8.0871 -10.8851 -2.6873 28 6 2.4228 -4.0381 -1.4319 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 0.2811 -4.8752 0.0078 32 1 0.9014 -4.4712 1.6265 33 1 1.3398 -6.8457 1.0984 34 1 2.8690 -5.9425 1.2255 35 1 1.4075 -6.6981 -1.3470 36 1 2.9537 -7.3662 -0.7679 37 1 5.0067 -7.2695 -0.9553 38 1 4.2020 -7.6507 -2.4965 39 1 6.0673 -6.5844 -3.7343 40 1 6.8721 -6.2033 -2.1930 41 1 6.3510 -8.9780 -2.2620 42 1 10.5085 -9.4665 -4.3112 43 1 10.8545 -12.0918 -3.8390 44 1 8.7452 -12.9311 -2.5274 45 1 3.1287 -3.3111 -1.8336 46 1 1.5211 -4.0518 -2.0442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210996022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:38 Heat of formation + Delta-G solvation = -43.936883 kcal Electronic energy + Delta-G solvation = -27974.668138 eV Core-core repulsion = 23866.309158 eV Total energy + Delta-G solvation = -4108.358980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.10883 -40.20961 -39.58771 -37.46540 -35.54146 -34.51805 -33.52488 -32.40375 -31.68722 -31.12965 -30.01498 -28.25512 -25.80763 -24.38417 -23.88421 -22.67340 -22.13300 -21.92810 -20.84675 -20.20236 -19.15485 -18.49267 -17.30680 -17.10124 -16.82462 -16.71525 -16.09783 -15.84177 -15.48201 -15.06601 -14.68755 -14.46705 -14.23799 -14.01119 -13.69042 -13.51475 -13.45276 -13.39266 -13.26723 -13.08030 -12.71079 -12.44906 -12.37893 -12.06874 -11.72090 -11.36292 -11.05106 -10.83696 -10.69397 -10.68545 -10.60936 -10.52150 -10.23756 -9.85217 -9.79277 -9.58235 -9.54034 -9.10687 -9.07544 -8.38372 -7.01227 -5.79090 -3.09087 0.63956 1.91190 2.21346 2.70970 2.73689 2.82943 3.26079 3.46604 3.50255 3.52541 4.20536 4.43174 4.45095 4.54749 4.59754 4.62698 4.78115 4.84647 5.03202 5.13625 5.17515 5.19991 5.31798 5.43217 5.46766 5.50877 5.58161 5.62443 5.74302 5.76063 5.85712 5.89347 5.97015 5.99587 6.12955 6.17993 6.31392 6.35346 6.46320 6.68850 6.81097 6.98073 7.06177 7.60096 7.71095 7.71639 8.31345 8.39248 9.50857 10.04345 10.39550 11.42960 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020412 B = 0.001967 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.413648 B =14235.055327 C =15316.160641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.605 5.605 16 C 0.513 3.487 17 O -0.537 6.537 18 C -0.153 4.153 19 C 0.133 3.867 20 N -0.720 5.720 21 C 0.602 3.398 22 O -0.513 6.513 23 C -0.079 4.079 24 C -0.120 4.120 25 C -0.225 4.225 26 C -0.007 4.007 27 O -0.165 6.165 28 C 0.092 3.908 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.404 0.596 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.091 0.909 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.069 -29.720 -2.935 32.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.339 5.339 16 C 0.300 3.700 17 O -0.414 6.414 18 C -0.193 4.193 19 C 0.009 3.991 20 N -0.372 5.372 21 C 0.387 3.613 22 O -0.390 6.390 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.244 4.244 26 C -0.077 4.077 27 O -0.061 6.061 28 C -0.033 4.033 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.239 0.761 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.227 0.773 45 H 0.110 0.890 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.579 -28.317 -3.438 31.175 hybrid contribution -0.013 0.317 0.161 0.355 sum 12.567 -28.000 -3.277 30.865 Atomic orbital electron populations 1.69650 1.05117 1.25894 1.57350 1.24747 0.95523 0.97768 1.02583 0.86259 0.78557 0.83331 0.78026 1.21072 1.21674 1.21204 1.19226 0.91079 0.83976 1.43232 0.91085 1.42361 1.05778 0.99550 1.88155 1.20406 0.94907 0.86507 0.92497 0.93208 1.21828 0.98705 0.94087 1.01869 1.21885 1.00959 0.98281 0.95786 1.21751 0.97015 0.88958 0.93971 1.48284 1.18756 1.11182 1.55708 1.20194 0.81177 0.89898 0.78752 1.90757 1.61527 1.44390 1.44698 1.21837 0.97184 0.97023 1.03271 1.21162 0.92740 0.82666 1.02488 1.45879 1.20134 1.12900 1.58255 1.16507 0.81055 0.84679 0.79027 1.90935 1.62182 1.40954 1.44916 1.22116 0.97056 0.87176 1.06714 1.22027 0.95881 0.95972 1.00179 1.21898 1.01314 0.95496 1.05689 1.24436 0.90005 0.92142 1.01134 1.84053 1.44245 1.16627 1.61126 1.22721 0.97915 0.81520 1.01101 0.93414 0.78063 0.92019 0.91385 0.90982 0.91575 0.91326 0.90338 0.88205 0.88319 0.89934 0.89873 0.76106 0.82124 0.82513 0.77252 0.89044 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.72 -17.68 5.12 -53.52 -0.27 -17.95 16 10 C 0.17 3.26 2.91 -68.03 -0.20 3.06 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.13 -1.89 5.36 -26.69 -0.14 -2.04 16 13 C -0.13 -1.40 6.08 -26.61 -0.16 -1.57 16 14 C 0.11 1.06 6.34 -3.71 -0.02 1.03 16 15 N -0.61 -8.61 2.98 -173.03 -0.52 -9.12 16 16 C 0.51 7.44 7.70 -10.98 -0.08 7.35 16 17 O -0.54 -10.35 15.40 5.56 0.09 -10.26 16 18 C -0.15 -1.37 4.16 -27.88 -0.12 -1.49 16 19 C 0.13 1.44 4.96 -4.04 -0.02 1.42 16 20 N -0.72 -6.45 5.55 -61.63 -0.34 -6.80 16 21 C 0.60 6.86 7.79 -12.86 -0.10 6.76 16 22 O -0.51 -7.81 16.86 5.20 0.09 -7.72 16 23 C -0.08 -0.74 7.13 -36.79 -0.26 -1.00 16 24 C -0.12 -1.02 10.62 -39.39 -0.42 -1.43 16 25 C -0.22 -1.32 10.88 -39.89 -0.43 -1.75 16 26 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 27 O -0.17 -1.21 10.40 5.00 0.05 -1.16 16 28 C 0.09 1.70 5.99 -3.93 -0.02 1.67 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.39 9.97 7.80 -40.82 -0.32 9.65 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 37 H 0.10 0.67 7.71 -51.93 -0.40 0.27 16 38 H 0.10 0.64 7.93 -51.93 -0.41 0.22 16 39 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 41 H 0.40 2.41 8.23 -40.82 -0.34 2.08 16 42 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.16 0.54 8.06 -52.49 -0.42 0.11 16 44 H 0.21 0.14 8.06 -52.49 -0.42 -0.28 16 45 H 0.09 2.01 7.01 -51.93 -0.36 1.65 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -36.01 385.70 -8.02 -44.02 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.75 Total: 7.66 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.87 Total: 5.00 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.41 Total: -61.11 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.23 Total: -19.14 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.01 -8.02 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210996022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.087 kcal (2) G-P(sol) polarization free energy of solvation -36.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds