Wall clock time and date at job start Tue Mar 31 2020 18:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48495 * 109.47142 * 239.99872 * 3 2 1 5 5 H 1.48499 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47332 * 119.99969 * 3 2 1 7 7 C 1.38817 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00254 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99535 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99678 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.52589 * 34.91646 * 10 9 7 12 12 C 1.53036 * 109.49830 * 155.00142 * 10 9 7 13 13 C 1.53045 * 109.53995 * 181.31580 * 12 10 9 14 14 C 1.53191 * 109.31061 * 298.63600 * 13 12 10 15 15 N 1.46924 * 108.77693 * 54.63266 * 14 13 12 16 16 C 1.34773 * 120.63180 * 126.37172 * 15 14 13 17 17 O 1.21283 * 120.00360 * 179.72484 * 16 15 14 18 18 C 1.50706 * 120.00081 * 359.97438 * 16 15 14 19 19 C 1.52998 * 109.47348 * 179.72561 * 18 16 15 20 20 N 1.46496 * 109.47238 * 179.97438 * 19 18 16 21 21 C 1.34769 * 120.00209 * 179.97438 * 20 19 18 22 22 O 1.21691 * 120.00116 * 0.02562 * 21 20 19 23 23 C 1.46666 * 120.00118 * 179.97438 * 21 20 19 24 24 C 1.36546 * 125.98647 * 180.02562 * 23 21 20 25 25 C 1.40364 * 106.70707 * 179.97438 * 24 23 21 26 26 C 1.35136 * 107.11233 * 359.97438 * 25 24 23 27 27 O 1.33932 * 108.76958 * 359.77638 * 26 25 24 28 28 C 1.46931 * 118.74139 * 306.64213 * 15 14 13 29 29 H 0.97002 * 120.00013 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00699 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.46377 * 61.29370 * 12 10 9 32 32 H 1.09005 * 109.44856 * 301.32559 * 12 10 9 33 33 H 1.08990 * 109.49843 * 178.68071 * 13 12 10 34 34 H 1.09006 * 109.49499 * 58.58279 * 13 12 10 35 35 H 1.08999 * 109.58467 * 294.84696 * 14 13 12 36 36 H 1.08996 * 109.70609 * 174.48858 * 14 13 12 37 37 H 1.09001 * 109.46564 * 299.73030 * 18 16 15 38 38 H 1.08998 * 109.47012 * 59.72084 * 18 16 15 39 39 H 1.09000 * 109.46986 * 300.00089 * 19 18 16 40 40 H 1.09002 * 109.46857 * 60.00224 * 19 18 16 41 41 H 0.97005 * 119.99809 * 0.02562 * 20 19 18 42 42 H 1.07996 * 126.64442 * 0.02562 * 24 23 21 43 43 H 1.07997 * 126.44102 * 180.02562 * 25 24 23 44 44 H 1.07995 * 125.61116 * 180.02562 * 26 25 24 45 45 H 1.08995 * 109.59030 * 173.14421 * 28 15 14 46 46 H 1.08998 * 109.58220 * 293.57198 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9693 -3.5509 0.5904 12 6 1.1807 -4.7526 0.6111 13 6 1.9568 -6.0713 0.6429 14 6 2.3179 -6.4811 -0.7884 15 7 3.0375 -5.3727 -1.4304 16 6 4.2409 -5.5750 -2.0024 17 8 4.8226 -4.6528 -2.5336 18 6 4.8614 -6.9483 -1.9868 19 6 6.2127 -6.9057 -2.7029 20 7 6.8161 -8.2405 -2.6872 21 6 8.0168 -8.4441 -3.2643 22 8 8.6001 -7.5191 -3.7981 23 6 8.6211 -9.7804 -3.2480 24 6 9.8258 -10.1228 -3.7921 25 6 10.0053 -11.4928 -3.5449 26 6 8.9164 -11.9210 -2.8689 27 8 8.0871 -10.8851 -2.6873 28 6 2.4228 -4.0381 -1.4319 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 0.2811 -4.8752 0.0078 32 1 0.9014 -4.4712 1.6265 33 1 1.3398 -6.8457 1.0984 34 1 2.8690 -5.9425 1.2255 35 1 1.4075 -6.6981 -1.3470 36 1 2.9537 -7.3662 -0.7679 37 1 5.0067 -7.2695 -0.9553 38 1 4.2020 -7.6507 -2.4965 39 1 6.0673 -6.5844 -3.7343 40 1 6.8721 -6.2033 -2.1930 41 1 6.3510 -8.9780 -2.2620 42 1 10.5085 -9.4665 -4.3112 43 1 10.8545 -12.0918 -3.8390 44 1 8.7452 -12.9311 -2.5274 45 1 3.1287 -3.3111 -1.8336 46 1 1.5211 -4.0518 -2.0442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210996022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:37 Heat of formation + Delta-G solvation = -71.699994 kcal Electronic energy + Delta-G solvation = -27975.872037 eV Core-core repulsion = 23866.309158 eV Total energy + Delta-G solvation = -4109.562879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.62823 -41.33137 -40.53285 -38.78128 -36.46843 -36.21884 -34.07008 -33.95356 -32.75326 -32.46085 -30.75536 -29.80375 -26.91572 -25.87952 -25.16490 -23.49436 -23.20948 -22.66294 -21.74948 -21.38538 -20.08432 -19.41277 -19.10661 -18.36230 -17.47638 -17.33999 -17.04304 -16.82180 -16.61227 -16.57442 -15.96299 -15.57224 -15.43911 -15.29149 -15.16558 -14.70218 -14.57148 -14.10797 -13.99621 -13.93361 -13.79548 -13.64137 -13.54554 -13.21187 -12.90928 -12.86332 -12.56161 -12.46328 -12.26793 -11.98240 -11.87561 -11.66686 -11.61132 -11.32875 -11.12185 -11.04847 -10.83645 -10.40529 -9.73051 -9.64292 -9.02384 -8.00404 -5.29329 0.01104 1.42441 1.43463 1.45309 1.51320 1.53886 1.61595 1.91896 2.05615 2.30705 2.52333 3.32635 3.48005 3.69270 3.77519 3.81871 3.95952 4.00437 4.04507 4.10874 4.14279 4.24195 4.36786 4.41105 4.45370 4.61849 4.66852 4.76188 4.80524 4.83625 4.90569 4.93251 4.94593 4.97276 5.07466 5.15641 5.18405 5.39835 5.39944 5.43712 5.49506 5.59189 5.82126 6.22494 6.36787 6.49444 6.95374 7.18455 7.29064 8.02114 8.26720 9.21842 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020412 B = 0.001967 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.413648 B =14235.055327 C =15316.160641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.064 0.936 9 N -0.730 5.730 10 C 0.166 3.834 11 H 0.030 0.970 12 C -0.119 4.119 13 C -0.122 4.122 14 C 0.099 3.901 15 N -0.604 5.604 16 C 0.504 3.496 17 O -0.598 6.598 18 C -0.132 4.132 19 C 0.138 3.862 20 N -0.700 5.700 21 C 0.598 3.402 22 O -0.567 6.567 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.238 4.238 26 C 0.017 3.983 27 O -0.165 6.165 28 C 0.106 3.894 29 H 0.253 0.747 30 H 0.377 0.623 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.423 0.577 42 H 0.153 0.847 43 H 0.181 0.819 44 H 0.259 0.741 45 H 0.044 0.956 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 -34.578 -1.803 36.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.370 5.370 10 C 0.056 3.944 11 H 0.048 0.952 12 C -0.158 4.158 13 C -0.160 4.160 14 C -0.021 4.021 15 N -0.337 5.337 16 C 0.293 3.707 17 O -0.479 6.479 18 C -0.172 4.172 19 C 0.014 3.986 20 N -0.352 5.352 21 C 0.386 3.614 22 O -0.448 6.448 23 C -0.160 4.160 24 C -0.150 4.150 25 C -0.256 4.256 26 C -0.053 4.053 27 O -0.060 6.060 28 C -0.020 4.020 29 H 0.062 0.938 30 H 0.210 0.790 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.261 0.739 42 H 0.171 0.829 43 H 0.199 0.801 44 H 0.274 0.726 45 H 0.063 0.937 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.600 -33.278 -2.265 35.655 hybrid contribution 0.043 1.669 -0.195 1.681 sum 12.643 -31.609 -2.460 34.133 Atomic orbital electron populations 1.69777 1.06235 1.26223 1.58987 1.25470 0.96409 1.00746 1.03389 0.85317 0.77393 0.79702 0.78001 1.21168 1.21448 1.20366 1.19469 0.90986 0.85577 1.41819 0.91839 1.42508 1.05509 1.00641 1.88353 1.20594 0.94664 0.86117 0.92991 0.95204 1.21753 0.98514 0.94793 1.00724 1.21889 1.00912 0.96456 0.96792 1.22198 0.98393 0.88606 0.92950 1.48325 1.18984 1.10437 1.55918 1.21207 0.80646 0.91501 0.77306 1.90742 1.63043 1.46901 1.47229 1.21791 0.95836 0.93777 1.05777 1.20899 0.93598 0.83084 1.01008 1.45620 1.19432 1.12626 1.57540 1.16823 0.81213 0.85137 0.78275 1.90900 1.63634 1.42892 1.47335 1.21649 0.97791 0.87153 1.09362 1.22271 0.95560 0.97557 0.99613 1.22223 1.02833 0.94295 1.06274 1.25422 0.88518 0.92877 0.98434 1.84044 1.44599 1.16473 1.60910 1.22085 0.96598 0.83565 0.99720 0.93818 0.79018 0.91594 0.92295 0.86975 0.91622 0.89712 0.85360 0.84355 0.84083 0.92475 0.92740 0.73862 0.82943 0.80143 0.72565 0.93747 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.26 13.06 21.65 0.28 -58.98 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.97 48.09 29.55 68.60 2.03 50.12 16 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 7 C -0.25 -14.29 9.93 84.03 0.83 -13.45 16 8 H 0.06 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -37.34 5.12 -323.24 -1.66 -39.00 16 10 C 0.17 6.59 2.91 44.92 0.13 6.72 16 11 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 12 C -0.12 -3.41 5.36 30.62 0.16 -3.25 16 13 C -0.12 -2.12 6.08 30.67 0.19 -1.93 16 14 C 0.10 1.50 6.34 86.36 0.55 2.05 16 15 N -0.60 -16.31 2.98 -819.73 -2.44 -18.76 16 16 C 0.50 14.24 7.70 87.66 0.67 14.92 16 17 O -0.60 -24.36 15.40 -3.04 -0.05 -24.41 16 18 C -0.13 -1.94 4.16 29.85 0.12 -1.82 16 19 C 0.14 2.97 4.96 86.38 0.43 3.40 16 20 N -0.70 -11.63 5.55 -467.12 -2.59 -14.22 16 21 C 0.60 13.82 7.79 86.44 0.67 14.49 16 22 O -0.57 -18.46 16.86 -4.32 -0.07 -18.54 16 23 C -0.11 -1.94 7.13 24.08 0.17 -1.76 16 24 C -0.13 -2.12 10.62 22.39 0.24 -1.88 16 25 C -0.24 -2.13 10.88 22.07 0.24 -1.89 16 26 C 0.02 0.10 12.08 67.10 0.81 0.91 16 27 O -0.16 -1.92 10.40 -5.02 -0.05 -1.98 16 28 C 0.11 4.06 5.99 86.22 0.52 4.58 16 29 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.38 20.23 7.80 -92.71 -0.72 19.50 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.13 0.75 5.93 -2.39 -0.01 0.74 16 37 H 0.14 1.09 7.71 -2.39 -0.02 1.07 16 38 H 0.14 1.00 7.93 -2.39 -0.02 0.98 16 39 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 40 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 41 H 0.42 3.64 8.23 -92.70 -0.76 2.88 16 42 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.26 -1.23 8.06 -2.91 -0.02 -1.25 16 45 H 0.04 2.10 7.01 -2.39 -0.02 2.08 16 46 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -88.13 385.70 1.18 -86.95 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.47 Total: 21.22 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.21 Total: 17.58 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -6.41 Total: -130.95 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -0.17 Total: -44.92 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -88.13 1.18 -86.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210996022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.250 kcal (2) G-P(sol) polarization free energy of solvation -88.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds