Wall clock time and date at job start Tue Mar 31 2020 18:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76197 * 100.00061 * 2 1 4 4 N 1.32357 * 119.24181 * 179.97438 * 3 2 1 5 5 C 1.32992 * 121.17329 * 179.97438 * 4 3 2 6 6 C 1.37468 * 119.01266 * 359.82282 * 5 4 3 7 7 C 1.39839 * 118.56306 * 0.31055 * 6 5 4 8 8 O 1.35512 * 120.35608 * 179.79356 * 7 6 5 9 9 C 1.42906 * 116.99999 * 179.97438 * 8 7 6 10 10 H 1.09000 * 110.63784 * 333.13879 * 9 8 7 11 11 C 1.55155 * 110.71957 * 210.00079 * 9 8 7 12 12 C 1.54911 * 101.57843 * 206.13348 * 11 9 8 13 13 N 1.47424 * 104.83166 * 37.01025 * 12 11 9 14 14 C 1.36935 * 125.64655 * 155.90742 * 13 12 11 15 15 H 1.08002 * 120.00062 * 179.97438 * 14 13 12 16 16 C 1.38814 * 120.00393 * 359.97364 * 14 13 12 17 17 N 1.31623 * 119.99810 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00418 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47092 * 89.99884 * 18 16 14 20 20 H 1.48493 * 109.47070 * 209.99944 * 18 16 14 21 21 H 1.48500 * 109.46903 * 329.99810 * 18 16 14 22 22 C 1.47020 * 108.70317 * 335.86908 * 13 12 11 23 23 N 1.32527 * 119.24156 * 359.97438 * 3 2 1 24 24 C 1.50363 * 122.82749 * 180.61822 * 6 5 4 25 25 C 1.52741 * 110.60736 * 342.53985 * 24 6 5 26 26 C 1.53319 * 108.49376 * 50.51852 * 25 24 6 27 27 C 1.50475 * 118.39722 * 179.77132 * 5 4 3 28 28 H 1.09005 * 109.46831 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47203 * 299.99176 * 1 2 3 30 30 H 1.08998 * 109.47426 * 60.00277 * 1 2 3 31 31 H 1.08997 * 111.00697 * 324.20696 * 11 9 8 32 32 H 1.09001 * 111.00356 * 88.02251 * 11 9 8 33 33 H 1.09006 * 110.36646 * 155.84581 * 12 11 9 34 34 H 1.09001 * 110.36803 * 278.17005 * 12 11 9 35 35 H 0.96998 * 120.00236 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.87830 * 241.64205 * 22 13 12 37 37 H 1.08999 * 109.87858 * 120.47646 * 22 13 12 38 38 H 1.09001 * 109.30392 * 102.70722 * 24 6 5 39 39 H 1.09000 * 109.30570 * 222.29996 * 24 6 5 40 40 H 1.08994 * 109.46666 * 290.90959 * 25 24 6 41 41 H 1.09003 * 109.78037 * 170.30633 * 25 24 6 42 42 H 1.09002 * 109.63564 * 170.78020 * 26 25 24 43 43 H 1.08999 * 109.63077 * 50.38026 * 26 25 24 44 44 H 1.09002 * 109.29824 * 42.00412 * 27 5 4 45 45 H 1.09004 * 109.13346 * 282.51707 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.3656 2.1714 0.0005 5 6 3.6406 3.4726 0.0000 6 6 2.6022 4.3734 -0.0048 7 6 1.2923 3.8839 -0.0023 8 8 0.2415 4.7395 -0.0026 9 6 -1.0656 4.1617 -0.0005 10 1 -1.0495 3.1734 -0.4599 11 6 -2.0764 5.0882 -0.7266 12 6 -3.4101 4.6837 -0.0503 13 7 -3.0576 4.4326 1.3590 14 6 -3.9182 4.5039 2.4218 15 1 -3.5609 4.3007 3.4205 16 6 -5.2498 4.8375 2.2155 17 7 -5.6854 5.0848 0.9983 18 14 -6.4236 4.9355 3.6654 19 1 -6.4205 6.3161 4.2123 20 1 -7.7948 4.5839 3.2168 21 1 -5.9885 3.9844 4.7196 22 6 -1.6294 4.0920 1.4343 23 7 1.0896 2.5736 -0.0005 24 6 2.8145 5.8619 -0.0193 25 6 4.2421 6.2055 0.4015 26 6 5.2117 5.3578 -0.4303 27 6 5.0836 3.8991 0.0059 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -1.8471 6.1376 -0.5418 32 1 -2.1005 4.8781 -1.7959 33 1 -4.1333 5.4963 -0.1215 34 1 -3.8088 3.7787 -0.5087 35 1 -6.6157 5.3182 0.8542 36 1 -1.5092 3.0841 1.8313 37 1 -1.1107 4.8082 2.0716 38 1 2.6379 6.2413 -1.0258 39 1 2.1146 6.3325 0.6711 40 1 4.3731 5.9795 1.4597 41 1 4.4348 7.2634 0.2231 42 1 6.2329 5.7012 -0.2650 43 1 4.9618 5.4472 -1.4875 44 1 5.6488 3.2671 -0.6791 45 1 5.4850 3.7876 1.0133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229160783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:56 Heat of formation + Delta-G solvation = 24.280067 kcal Electronic energy + Delta-G solvation = -27106.041919 eV Core-core repulsion = 23443.393919 eV Total energy + Delta-G solvation = -3662.648000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.42933 -38.96845 -37.18222 -36.45933 -33.35730 -32.36468 -31.48514 -30.08052 -29.31149 -28.92759 -27.40177 -25.05873 -24.72608 -23.96571 -22.75503 -20.82786 -20.37297 -20.06906 -18.51519 -17.97305 -16.96784 -16.75612 -16.07143 -15.27878 -14.99352 -14.78386 -14.53015 -14.38996 -14.14682 -14.08870 -13.65591 -13.59975 -13.36970 -13.24876 -12.99525 -12.55432 -12.53871 -12.36992 -11.95217 -11.76544 -11.57674 -11.16987 -11.09606 -11.06354 -10.86512 -10.83777 -10.65358 -10.54446 -10.28815 -10.16965 -9.96779 -9.87890 -9.66327 -9.35809 -9.09909 -8.72959 -7.77605 -6.93601 -5.73092 -3.15441 0.76001 1.14152 1.18246 2.05814 2.98669 3.36559 3.41590 3.43580 3.56285 3.92688 4.37322 4.45116 4.51962 4.63024 4.65622 4.80660 5.07973 5.14286 5.21882 5.22322 5.22747 5.29208 5.32445 5.37449 5.43261 5.56952 5.58695 5.64897 5.70427 5.76342 5.83574 5.87023 5.99467 6.06824 6.11063 6.22578 6.35532 6.41754 6.54007 6.58776 6.88008 7.35163 7.38817 7.54194 7.74504 7.86913 8.25755 9.13434 9.73590 10.36738 11.31344 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.003336 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.282076 B = 8390.712985 C = 9738.315691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.004 6.004 3 C 0.332 3.668 4 N -0.532 5.532 5 C 0.210 3.790 6 C -0.209 4.209 7 C 0.388 3.612 8 O -0.282 6.282 9 C 0.073 3.927 10 H 0.093 0.907 11 C -0.139 4.139 12 C 0.155 3.845 13 N -0.600 5.600 14 C -0.224 4.224 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.917 3.083 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.281 1.281 22 C 0.128 3.872 23 N -0.577 5.577 24 C -0.061 4.061 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.067 4.067 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.017 0.983 35 H 0.254 0.746 36 H 0.027 0.973 37 H 0.030 0.970 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.232 -2.889 -5.320 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.229 5.771 3 C -0.044 4.044 4 N -0.254 5.254 5 C 0.067 3.933 6 C -0.218 4.218 7 C 0.197 3.803 8 O -0.184 6.184 9 C 0.017 3.983 10 H 0.111 0.889 11 C -0.178 4.178 12 C 0.030 3.970 13 N -0.327 5.327 14 C -0.352 4.352 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.571 5.571 18 Si 0.747 3.253 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.207 1.207 22 C 0.001 3.999 23 N -0.312 5.312 24 C -0.099 4.099 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.104 4.104 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.461 -4.497 -5.269 21.601 hybrid contribution -1.609 1.676 0.756 2.443 sum 18.852 -2.820 -4.512 19.589 Atomic orbital electron populations 1.23588 0.93467 1.06401 1.07708 1.85631 1.07422 0.93480 1.90583 1.24466 0.86277 0.99846 0.93794 1.68431 1.20610 1.16242 1.20100 1.21087 0.96050 0.87206 0.89003 1.20143 0.90427 0.98943 1.12257 1.20121 0.87886 0.86308 0.85993 1.86327 1.14504 1.32658 1.84922 1.23754 0.77236 0.98451 0.98869 0.88884 1.23283 0.96578 0.99364 0.98593 1.21981 0.91692 1.00994 0.82325 1.44364 1.03118 1.81344 1.03908 1.19074 0.89383 1.40083 0.86640 0.90408 1.24794 0.96906 1.01827 0.96956 1.69751 1.15115 1.53747 1.18523 0.86035 0.80275 0.77832 0.81139 1.21478 1.21546 1.20681 1.21517 0.87508 0.97886 0.92946 1.68395 1.35539 1.03040 1.24207 1.20117 0.97596 0.89461 1.02751 1.21589 0.94089 0.99987 1.00176 1.21597 1.00063 0.93581 1.00495 1.20384 0.89455 0.96991 1.03619 0.87567 0.88739 0.89089 0.90851 0.91594 0.86808 0.96516 0.93570 0.95476 0.95192 0.90483 0.89938 0.91471 0.90816 0.90623 0.91304 0.89066 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.62 101.05 0.97 -0.68 16 2 S 0.00 -0.06 22.89 -107.50 -2.46 -2.52 16 3 C 0.33 5.14 7.85 -91.04 -0.71 4.43 16 4 N -0.53 -7.93 10.27 -9.92 -0.10 -8.04 16 5 C 0.21 2.75 6.62 -82.48 -0.55 2.21 16 6 C -0.21 -2.91 5.75 -104.47 -0.60 -3.51 16 7 C 0.39 6.38 7.49 -16.62 -0.12 6.26 16 8 O -0.28 -4.95 9.04 -18.23 -0.16 -5.11 16 9 C 0.07 1.38 3.26 -24.90 -0.08 1.30 16 10 H 0.09 1.74 6.98 -51.93 -0.36 1.38 16 11 C -0.14 -2.70 6.81 -24.58 -0.17 -2.87 16 12 C 0.15 3.73 5.89 -2.53 -0.01 3.71 16 13 N -0.60 -15.52 3.39 -170.07 -0.58 -16.10 16 14 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 15 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 16 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 17 N -0.92 -26.50 10.09 55.49 0.56 -25.94 16 18 Si 0.92 21.93 29.55 -169.99 -5.02 16.90 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C 0.13 2.82 7.02 -3.07 -0.02 2.80 16 23 N -0.58 -9.53 7.48 -13.47 -0.10 -9.63 16 24 C -0.06 -0.68 5.34 -28.18 -0.15 -0.83 16 25 C -0.12 -1.00 5.98 -26.70 -0.16 -1.16 16 26 C -0.12 -0.87 5.96 -26.67 -0.16 -1.03 16 27 C -0.07 -0.60 5.96 -28.10 -0.17 -0.77 16 28 H 0.11 0.95 8.14 -51.91 -0.42 0.53 16 29 H 0.09 1.24 8.11 -51.92 -0.42 0.82 16 30 H 0.09 1.11 8.11 -51.92 -0.42 0.69 16 31 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.11 3.05 5.88 -51.93 -0.31 2.75 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 40 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -30.86 372.12 -11.40 -42.26 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.95 Total: -0.53 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.19 Total: 3.10 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.22 Total: -59.71 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.16 Total: -5.11 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.46 Total: -2.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.86 -11.40 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229160783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.543 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds