Wall clock time and date at job start Tue Mar 31 2020 18:06:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.80999 * 1
3 3 C 1.76198 * 99.99771 * 2 1
4 4 N 1.32366 * 119.24493 * 180.02562 * 3 2 1
5 5 C 1.32989 * 121.17640 * 179.91577 * 4 3 2
6 6 C 1.37477 * 119.01190 * 359.55893 * 5 4 3
7 7 C 1.39834 * 118.55671 * 0.84346 * 6 5 4
8 8 O 1.35523 * 120.35203 * 179.49593 * 7 6 5
9 9 C 1.42903 * 116.99832 * 179.72698 * 8 7 6
10 10 C 1.53514 * 114.17081 * 149.99881 * 9 8 7
11 11 N 1.47483 * 87.92777 * 87.61994 * 10 9 8
12 12 C 1.46903 * 110.99717 * 138.70421 * 11 10 9
13 13 C 1.50694 * 109.47066 * 169.99804 * 12 11 10
14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11
15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11
16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12
17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12
18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13
19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13
20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13
21 21 C 1.47480 * 87.83900 * 27.00973 * 11 10 9
22 22 N 1.32530 * 119.24548 * 359.97438 * 3 2 1
23 23 C 1.50355 * 122.82069 * 180.34644 * 6 5 4
24 24 C 1.52822 * 110.53376 * 342.79108 * 23 6 5
25 25 C 1.53305 * 108.45804 * 50.63143 * 24 23 6
26 26 C 1.50470 * 118.39591 * 179.64667 * 5 4 3
27 27 H 1.09007 * 109.47019 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47508 * 300.00300 * 1 2 3
29 29 H 1.09007 * 109.47100 * 60.00329 * 1 2 3
30 30 H 1.08997 * 113.25538 * 17.04549 * 9 8 7
31 31 H 1.09000 * 113.47331 * 332.85672 * 10 9 8
32 32 H 1.08995 * 113.52785 * 202.39262 * 10 9 8
33 33 H 1.09007 * 109.47052 * 49.99488 * 12 11 10
34 34 H 1.09003 * 109.46808 * 290.00181 * 12 11 10
35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13
36 36 H 1.09004 * 113.47132 * 87.75237 * 21 11 10
37 37 H 1.09000 * 113.47538 * 218.21976 * 21 11 10
38 38 H 1.08999 * 109.45677 * 222.34481 * 23 6 5
39 39 H 1.09002 * 108.92369 * 102.89322 * 23 6 5
40 40 H 1.08997 * 109.63433 * 290.94182 * 24 23 6
41 41 H 1.09001 * 109.63986 * 170.32769 * 24 23 6
42 42 H 1.09008 * 109.63038 * 170.61641 * 25 24 23
43 43 H 1.08998 * 109.63034 * 50.03208 * 25 24 23
44 44 H 1.09008 * 109.29865 * 282.68446 * 26 5 4
45 45 H 1.09000 * 109.30669 * 42.26197 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8100 0.0000 0.0000
3 6 2.1159 1.7352 0.0000
4 7 3.3656 2.1716 -0.0005
5 6 3.6405 3.4727 -0.0022
6 6 2.6020 4.3736 -0.0127
7 6 1.2922 3.8839 -0.0031
8 8 0.2413 4.7396 -0.0026
9 6 -1.0657 4.1617 0.0014
10 6 -2.1296 5.0183 0.7022
11 7 -2.3508 5.7018 -0.5859
12 6 -3.7828 5.9282 -0.8225
13 6 -3.9579 6.8361 -2.0125
14 1 -3.0921 7.2081 -2.5401
15 6 -5.2236 7.1927 -2.4273
16 7 -6.2781 6.7401 -1.7846
17 14 -5.4406 8.3186 -3.9019
18 1 -6.8883 8.5473 -4.1412
19 1 -4.7711 9.6171 -3.6361
20 1 -4.8351 7.6858 -5.1011
21 6 -1.8929 4.4697 -1.2546
22 7 1.0895 2.5736 -0.0005
23 6 2.8144 5.8620 -0.0230
24 6 4.2420 6.2027 0.4030
25 6 5.2121 5.3579 -0.4309
26 6 5.0834 3.8993 0.0055
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3634 0.5139 0.8899
29 1 -0.3634 0.5138 -0.8901
30 1 -1.0715 3.1127 0.2971
31 1 -1.7222 5.6700 1.4752
32 1 -2.9923 4.4468 1.0442
33 1 -4.2275 6.3929 0.0576
34 1 -4.2740 4.9748 -1.0174
35 1 -7.1685 6.9913 -2.0762
36 1 -2.6922 3.7509 -1.4352
37 1 -1.2850 4.6564 -2.1400
38 1 2.1112 6.3339 0.6632
39 1 2.6402 6.2369 -1.0316
40 1 4.3730 5.9740 1.4606
41 1 4.4339 7.2612 0.2275
42 1 6.2331 5.7013 -0.2642
43 1 4.9605 5.4476 -1.4876
44 1 5.4868 3.7873 1.0119
45 1 5.6490 3.2695 -0.6813
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001229162903.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:06:53
Heat of formation + Delta-G solvation = 39.074960 kcal
Electronic energy + Delta-G solvation = -26591.673959 eV
Core-core repulsion = 22929.667513 eV
Total energy + Delta-G solvation = -3662.006446 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.141 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.54382 -39.86039 -37.55605 -37.09533 -33.39111 -32.85739 -31.65363 -30.13228
-29.27730 -29.08619 -25.67681 -25.43155 -25.00941 -24.16271 -22.89272 -21.79346
-20.64711 -19.76798 -18.50076 -17.82289 -16.85553 -16.38880 -16.19640 -15.41256
-15.32351 -14.89723 -14.71852 -14.48016 -14.40845 -14.10599 -13.89251 -13.63765
-13.54567 -13.42572 -13.26556 -13.08861 -12.67587 -12.41943 -12.08042 -12.00430
-11.77915 -11.30897 -11.19300 -11.10616 -10.99606 -10.93119 -10.64853 -10.54149
-10.36017 -10.31285 -10.01491 -9.74172 -9.48383 -9.32479 -9.19076 -8.47328
-7.94052 -7.87916 -6.07700 -4.08970 0.67019 1.03246 1.05749 1.92163
2.77717 3.31523 3.34959 3.38753 3.45836 3.83420 4.29486 4.38513
4.43839 4.57414 4.63919 4.66681 4.72742 4.81464 4.97122 5.02979
5.05103 5.18116 5.25685 5.27084 5.28433 5.34992 5.54765 5.57500
5.64971 5.71691 5.79538 5.80833 5.84179 5.94659 6.00264 6.05637
6.08153 6.16150 6.28563 6.51966 6.74983 7.07205 7.21379 7.58151
7.76085 7.79636 8.03923 8.39604 8.98248 9.55314 11.03378
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.012348 B = 0.003008 C = 0.002561
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2267.058574 B = 9305.185183 C =10929.020150
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 S -0.002 6.002
3 C 0.330 3.670
4 N -0.530 5.530
5 C 0.211 3.789
6 C -0.203 4.203
7 C 0.385 3.615
8 O -0.253 6.253
9 C 0.047 3.953
10 C -0.002 4.002
11 N -0.456 5.456
12 C 0.157 3.843
13 C -0.506 4.506
14 H 0.063 0.937
15 C 0.054 3.946
16 N -0.901 5.901
17 Si 0.900 3.100
18 H -0.287 1.287
19 H -0.275 1.275
20 H -0.277 1.277
21 C 0.002 3.998
22 N -0.581 5.581
23 C -0.063 4.063
24 C -0.120 4.120
25 C -0.121 4.121
26 C -0.067 4.067
27 H 0.106 0.894
28 H 0.090 0.910
29 H 0.092 0.908
30 H 0.102 0.898
31 H 0.083 0.917
32 H 0.079 0.921
33 H 0.030 0.970
34 H 0.004 0.996
35 H 0.262 0.738
36 H 0.078 0.922
37 H 0.080 0.920
38 H 0.084 0.916
39 H 0.080 0.920
40 H 0.066 0.934
41 H 0.074 0.926
42 H 0.076 0.924
43 H 0.070 0.930
44 H 0.091 0.909
45 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.075 -10.391 6.090 24.273
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.313 4.313
2 S 0.231 5.769
3 C -0.046 4.046
4 N -0.252 5.252
5 C 0.068 3.932
6 C -0.212 4.212
7 C 0.194 3.806
8 O -0.155 6.155
9 C -0.010 4.010
10 C -0.131 4.131
11 N -0.180 5.180
12 C 0.031 3.969
13 C -0.544 4.544
14 H 0.081 0.919
15 C -0.147 4.147
16 N -0.540 5.540
17 Si 0.728 3.272
18 H -0.213 1.213
19 H -0.201 1.201
20 H -0.202 1.202
21 C -0.128 4.128
22 N -0.316 5.316
23 C -0.101 4.101
24 C -0.158 4.158
25 C -0.159 4.159
26 C -0.105 4.105
27 H 0.124 0.876
28 H 0.109 0.891
29 H 0.111 0.889
30 H 0.120 0.880
31 H 0.102 0.898
32 H 0.097 0.903
33 H 0.048 0.952
34 H 0.022 0.978
35 H 0.072 0.928
36 H 0.096 0.904
37 H 0.098 0.902
38 H 0.102 0.898
39 H 0.099 0.901
40 H 0.085 0.915
41 H 0.093 0.907
42 H 0.094 0.906
43 H 0.088 0.912
44 H 0.109 0.891
45 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 21.608 -11.339 5.938 25.114
hybrid contribution -1.901 1.622 -0.675 2.588
sum 19.707 -9.718 5.263 22.594
Atomic orbital electron populations
1.23582 0.93936 1.06396 1.07432 1.85714 1.07016 0.93448 1.90685
1.24451 0.86327 0.99785 0.94012 1.68431 1.20563 1.16310 1.19899
1.21107 0.96123 0.87110 0.88888 1.20178 0.90255 0.99162 1.11573
1.20159 0.87936 0.86264 0.86235 1.86362 1.13290 1.31270 1.84604
1.23736 0.79102 0.97948 1.00164 1.24063 0.95536 0.96558 0.96978
1.69104 1.22452 1.25391 1.01015 1.20297 0.82078 0.96605 0.97952
1.21046 0.92194 1.28626 1.12545 0.91894 1.25006 0.95840 0.96521
0.97306 1.69942 0.98119 1.45274 1.40686 0.86522 0.76819 0.81178
0.82692 1.21300 1.20084 1.20243 1.24164 0.97615 0.93960 0.97011
1.68328 1.35639 1.03026 1.24609 1.20171 0.97577 0.89206 1.03168
1.21599 0.94049 1.00170 0.99980 1.21617 1.00121 0.93485 1.00635
1.20390 0.89332 0.97142 1.03614 0.87554 0.89118 0.88912 0.88036
0.89835 0.90292 0.95154 0.97818 0.92814 0.90359 0.90195 0.89770
0.90137 0.91536 0.90725 0.90551 0.91168 0.89058 0.89038
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.30 9.62 101.05 0.97 -0.33 16
2 S 0.00 -0.02 22.89 -107.50 -2.46 -2.48 16
3 C 0.33 4.62 7.85 -91.03 -0.71 3.91 16
4 N -0.53 -7.36 10.27 -9.92 -0.10 -7.46 16
5 C 0.21 2.60 6.62 -82.48 -0.55 2.06 16
6 C -0.20 -2.68 5.75 -104.47 -0.60 -3.28 16
7 C 0.39 5.84 7.49 -16.63 -0.12 5.72 16
8 O -0.25 -4.17 9.36 -18.26 -0.17 -4.34 16
9 C 0.05 0.77 4.54 -26.20 -0.12 0.65 16
10 C 0.00 -0.03 7.52 -7.53 -0.06 -0.09 16
11 N -0.46 -9.99 6.32 -246.08 -1.55 -11.55 16
12 C 0.16 4.06 4.57 -4.98 -0.02 4.04 16
13 C -0.51 -14.47 9.39 -34.44 -0.32 -14.79 16
14 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16
15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16
16 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16
17 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16
18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
21 C 0.00 0.04 7.55 -7.54 -0.06 -0.02 16
22 N -0.58 -8.53 7.44 -13.46 -0.10 -8.63 16
23 C -0.06 -0.70 5.35 -28.14 -0.15 -0.85 16
24 C -0.12 -0.97 5.98 -26.66 -0.16 -1.13 16
25 C -0.12 -0.86 5.97 -26.68 -0.16 -1.02 16
26 C -0.07 -0.57 5.95 -28.10 -0.17 -0.74 16
27 H 0.11 0.69 8.14 -51.91 -0.42 0.27 16
28 H 0.09 0.85 8.11 -51.92 -0.42 0.43 16
29 H 0.09 0.92 8.11 -51.91 -0.42 0.50 16
30 H 0.10 1.49 6.89 -51.93 -0.36 1.13 16
31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16
32 H 0.08 1.31 7.91 -51.93 -0.41 0.90 16
33 H 0.03 0.84 8.08 -51.92 -0.42 0.42 16
34 H 0.00 0.11 7.30 -51.93 -0.38 -0.27 16
35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
36 H 0.08 1.44 7.42 -51.93 -0.39 1.06 16
37 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16
38 H 0.08 1.00 7.85 -51.93 -0.41 0.59 16
39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
40 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16
41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
42 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16
43 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16
44 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16
45 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16
LS Contribution 379.18 15.07 5.71 5.71
Total: -1.00 -32.02 379.18 -12.26 -44.27
By element:
Atomic # 1 Polarization: 5.01 SS G_CDS: -6.97 Total: -1.96 kcal
Atomic # 6 Polarization: -2.09 SS G_CDS: -2.33 Total: -4.42 kcal
Atomic # 7 Polarization: -52.59 SS G_CDS: -1.02 Total: -53.61 kcal
Atomic # 8 Polarization: -4.17 SS G_CDS: -0.17 Total: -4.34 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Atomic # 16 Polarization: -0.02 SS G_CDS: -2.46 Total: -2.48 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -32.02 -12.26 -44.27 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001229162903.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.346 kcal
(2) G-P(sol) polarization free energy of solvation -32.015 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.331 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.256 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds