Wall clock time and date at job start Tue Mar 31 2020 18:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48501 * 109.47259 * 239.99948 * 3 2 1 5 5 H 1.48499 * 109.47362 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47363 * 119.99824 * 3 2 1 7 7 C 1.38955 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00043 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99825 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00218 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.72893 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53038 * 109.52423 * 185.84163 * 14 13 12 16 16 C 1.53125 * 109.27545 * 300.81993 * 15 14 13 17 17 N 1.46509 * 109.51897 * 177.55934 * 16 15 14 18 18 C 1.34772 * 119.99730 * 85.32040 * 17 16 15 19 19 O 1.21286 * 120.00269 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99825 * 179.97438 * 18 17 16 21 21 C 1.50698 * 109.47023 * 180.02562 * 20 18 17 22 22 C 1.34505 * 125.79317 * 89.99767 * 21 20 18 23 23 C 1.41385 * 106.84232 * 179.97438 * 22 21 20 24 24 C 1.34516 * 106.84118 * 0.02562 * 23 22 21 25 25 O 1.34307 * 108.41921 * 359.73424 * 24 23 22 26 26 C 1.53119 * 109.16101 * 57.65935 * 16 15 14 27 27 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 28 28 H 0.96995 * 120.00108 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00153 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.46989 * 293.72634 * 12 10 9 31 31 H 1.08994 * 109.47105 * 53.72813 * 12 10 9 32 32 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 33 33 H 1.09004 * 109.46392 * 65.82754 * 14 13 12 34 34 H 1.08998 * 109.50374 * 180.88473 * 15 14 13 35 35 H 1.09001 * 109.50604 * 60.76106 * 15 14 13 36 36 H 1.08999 * 109.57664 * 297.71802 * 16 15 14 37 37 H 0.97001 * 119.99306 * 265.31544 * 17 16 15 38 38 H 1.08997 * 109.46851 * 300.00193 * 20 18 17 39 39 H 1.08995 * 109.46741 * 59.99941 * 20 18 17 40 40 H 1.07997 * 126.57908 * 0.03772 * 22 21 20 41 41 H 1.07995 * 126.58062 * 179.97438 * 23 22 21 42 42 H 1.07998 * 125.79419 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.50519 * 182.40701 * 26 16 15 44 44 H 1.08998 * 109.53606 * 62.29826 * 26 16 15 45 45 H 1.08994 * 109.45963 * 294.17267 * 27 13 12 46 46 H 1.09003 * 109.46062 * 54.15362 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0022 13 7 2.1913 -5.9755 -0.1480 14 6 1.5325 -7.2646 0.0982 15 6 2.5756 -8.3843 0.0769 16 6 3.2740 -8.3987 -1.2857 17 7 4.3139 -9.4307 -1.2919 18 6 3.9964 -10.7054 -1.5932 19 8 2.8498 -10.9983 -1.8588 20 6 5.0662 -11.7668 -1.6002 21 6 4.4542 -13.0944 -1.9661 22 6 4.3279 -13.5858 -3.2118 23 6 3.7041 -14.8490 -3.0926 24 6 3.4860 -15.0537 -1.7811 25 8 3.9473 -13.9901 -1.1031 26 6 3.9106 -7.0293 -1.5387 27 6 2.8288 -5.9489 -1.4706 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.7037 -4.9702 0.9428 31 1 0.5359 -4.8742 -0.8266 32 1 1.0434 -7.2425 1.0720 33 1 0.7887 -7.4464 -0.6777 34 1 2.0841 -9.3427 0.2440 35 1 3.3121 -8.2105 0.8615 36 1 2.5449 -8.6116 -2.0675 37 1 5.2308 -9.1964 -1.0792 38 1 5.8318 -11.5063 -2.3310 39 1 5.5171 -11.8347 -0.6101 40 1 4.6435 -13.1077 -4.1273 41 1 3.4505 -15.5203 -3.8997 42 1 3.0230 -15.9274 -1.3466 43 1 4.3728 -7.0196 -2.5258 44 1 4.6683 -6.8339 -0.7800 45 1 2.0789 -6.1369 -2.2390 46 1 3.2813 -4.9712 -1.6361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229670538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:17 Heat of formation + Delta-G solvation = -52.903721 kcal Electronic energy + Delta-G solvation = -28029.221179 eV Core-core repulsion = 23920.473368 eV Total energy + Delta-G solvation = -4108.747812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.81408 -40.18698 -38.91459 -37.54566 -35.03176 -33.84900 -33.46183 -32.63125 -31.49165 -31.08194 -30.74104 -27.81200 -26.73615 -24.53172 -23.18998 -22.75269 -22.01710 -21.18792 -20.47029 -19.83496 -19.16073 -17.86012 -17.75593 -17.42676 -16.46606 -16.03286 -15.94094 -15.59555 -15.25760 -14.94719 -14.65903 -14.52268 -14.03196 -13.90167 -13.85527 -13.54747 -13.37025 -13.08794 -13.06480 -12.94513 -12.90806 -12.28604 -12.12735 -11.87543 -11.61071 -11.45114 -11.26311 -11.10937 -11.01975 -10.79024 -10.44959 -10.42508 -10.21126 -10.17521 -10.07420 -9.46095 -9.19942 -8.72988 -8.43004 -7.96572 -7.84815 -6.40865 -3.81730 1.43184 2.33738 2.37238 2.64734 3.08375 3.20110 3.25952 3.30005 3.92163 3.98953 4.21571 4.24625 4.51764 4.64594 4.74837 4.78872 4.82563 4.90598 4.96498 5.07864 5.12785 5.25768 5.31434 5.46517 5.50369 5.53976 5.64499 5.65073 5.70205 5.80490 5.82774 5.87141 6.00683 6.01580 6.12382 6.21225 6.23591 6.30883 6.39526 6.41661 6.86453 7.24258 7.30789 7.41872 7.55481 7.98289 8.07098 8.62947 9.18843 9.55754 10.07630 10.76812 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.043062 B = 0.001718 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.066936 B =16291.066282 C =16559.766228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.058 3.942 15 C -0.122 4.122 16 C 0.144 3.856 17 N -0.723 5.723 18 C 0.513 3.487 19 O -0.529 6.529 20 C -0.062 4.062 21 C 0.005 3.995 22 C -0.197 4.197 23 C -0.214 4.214 24 C -0.038 4.038 25 O -0.173 6.173 26 C -0.118 4.118 27 C 0.059 3.941 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.402 0.598 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.202 0.798 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.025 0.975 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -25.864 -4.090 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.071 4.071 15 C -0.161 4.161 16 C 0.040 3.960 17 N -0.374 5.374 18 C 0.298 3.702 19 O -0.405 6.405 20 C -0.102 4.102 21 C -0.045 4.045 22 C -0.216 4.216 23 C -0.233 4.233 24 C -0.106 4.106 25 O -0.069 6.069 26 C -0.156 4.156 27 C -0.069 4.069 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.236 0.764 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.219 0.781 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.043 0.957 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.560 -25.802 -3.627 27.130 hybrid contribution -0.580 0.749 -0.689 1.171 sum 6.980 -25.053 -4.315 26.363 Atomic orbital electron populations 1.69603 1.05928 1.28235 1.50562 1.25257 0.95623 0.99696 0.97363 0.85922 0.78752 0.80522 0.79029 1.19961 1.21011 1.19912 1.19644 0.93314 0.82240 1.47700 0.87976 1.41880 1.09197 1.04598 1.64486 1.19752 0.88430 0.84518 0.84424 1.90494 1.13637 1.86961 1.55054 1.21845 0.93718 0.91208 1.01748 1.61522 1.31148 1.01041 1.30294 1.22052 0.95054 0.88918 1.01078 1.21929 0.98811 0.98060 0.97317 1.21137 0.89872 0.86723 0.98295 1.46080 1.12579 1.07770 1.70980 1.20381 0.89754 0.83203 0.76878 1.90756 1.21012 1.81150 1.47550 1.20105 0.97250 0.86921 1.05939 1.21460 1.02638 0.92131 0.88280 1.21526 1.05804 0.96904 0.97343 1.21806 1.05776 0.98712 0.96989 1.24003 1.03347 0.91609 0.91644 1.83989 1.59957 1.25318 1.37607 1.21827 0.99191 0.92339 1.02277 1.22112 0.95646 1.00782 0.88393 0.91843 0.77504 0.89246 0.93539 0.90471 0.95026 0.91356 0.90712 0.89766 0.76410 0.85854 0.86943 0.83609 0.83476 0.78119 0.91214 0.90151 0.95664 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.30 7.31 -10.99 -0.08 10.22 16 11 O -0.58 -15.18 14.29 5.55 0.08 -15.10 16 12 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 13 N -0.52 -8.42 4.35 -236.12 -1.03 -9.45 16 14 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 15 C -0.12 -1.48 5.67 -26.65 -0.15 -1.63 16 16 C 0.14 1.64 2.52 -67.80 -0.17 1.47 16 17 N -0.72 -6.44 5.08 -53.68 -0.27 -6.71 16 18 C 0.51 5.32 7.79 -10.98 -0.09 5.24 16 19 O -0.53 -7.96 15.70 5.55 0.09 -7.87 16 20 C -0.06 -0.44 6.23 -29.03 -0.18 -0.62 16 21 C 0.01 0.05 5.81 -35.63 -0.21 -0.15 16 22 C -0.20 -1.89 10.81 -39.70 -0.43 -2.32 16 23 C -0.21 -1.87 10.91 -39.70 -0.43 -2.30 16 24 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 25 O -0.17 -1.87 10.65 5.68 0.06 -1.81 16 26 C -0.12 -1.43 5.57 -26.65 -0.15 -1.57 16 27 C 0.06 0.92 5.12 -3.83 -0.02 0.90 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 30 H 0.09 1.45 7.98 -51.93 -0.41 1.04 16 31 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.08 0.97 8.01 -51.93 -0.42 0.55 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.11 7.58 -51.93 -0.39 0.72 16 37 H 0.40 2.39 8.61 -40.82 -0.35 2.04 16 38 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.20 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 1.94 6.06 -51.93 -0.31 1.62 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -34.96 384.21 -8.27 -43.23 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.79 Total: 11.09 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.84 Total: 2.89 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.63 Total: -54.14 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.23 Total: -24.78 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.96 -8.27 -43.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229670538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.670 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds