Wall clock time and date at job start Tue Mar 31 2020 18:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48501 * 109.47259 * 239.99948 * 3 2 1 5 5 H 1.48499 * 109.47362 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47363 * 119.99824 * 3 2 1 7 7 C 1.38955 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00043 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99825 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00218 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.72893 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53038 * 109.52423 * 185.84163 * 14 13 12 16 16 C 1.53125 * 109.27545 * 300.81993 * 15 14 13 17 17 N 1.46509 * 109.51897 * 177.55934 * 16 15 14 18 18 C 1.34772 * 119.99730 * 85.32040 * 17 16 15 19 19 O 1.21286 * 120.00269 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99825 * 179.97438 * 18 17 16 21 21 C 1.50698 * 109.47023 * 180.02562 * 20 18 17 22 22 C 1.34505 * 125.79317 * 89.99767 * 21 20 18 23 23 C 1.41385 * 106.84232 * 179.97438 * 22 21 20 24 24 C 1.34516 * 106.84118 * 0.02562 * 23 22 21 25 25 O 1.34307 * 108.41921 * 359.73424 * 24 23 22 26 26 C 1.53119 * 109.16101 * 57.65935 * 16 15 14 27 27 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 28 28 H 0.96995 * 120.00108 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00153 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.46989 * 293.72634 * 12 10 9 31 31 H 1.08994 * 109.47105 * 53.72813 * 12 10 9 32 32 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 33 33 H 1.09004 * 109.46392 * 65.82754 * 14 13 12 34 34 H 1.08998 * 109.50374 * 180.88473 * 15 14 13 35 35 H 1.09001 * 109.50604 * 60.76106 * 15 14 13 36 36 H 1.08999 * 109.57664 * 297.71802 * 16 15 14 37 37 H 0.97001 * 119.99306 * 265.31544 * 17 16 15 38 38 H 1.08997 * 109.46851 * 300.00193 * 20 18 17 39 39 H 1.08995 * 109.46741 * 59.99941 * 20 18 17 40 40 H 1.07997 * 126.57908 * 0.03772 * 22 21 20 41 41 H 1.07995 * 126.58062 * 179.97438 * 23 22 21 42 42 H 1.07998 * 125.79419 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.50519 * 182.40701 * 26 16 15 44 44 H 1.08998 * 109.53606 * 62.29826 * 26 16 15 45 45 H 1.08994 * 109.45963 * 294.17267 * 27 13 12 46 46 H 1.09003 * 109.46062 * 54.15362 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0022 13 7 2.1913 -5.9755 -0.1480 14 6 1.5325 -7.2646 0.0982 15 6 2.5756 -8.3843 0.0769 16 6 3.2740 -8.3987 -1.2857 17 7 4.3139 -9.4307 -1.2919 18 6 3.9964 -10.7054 -1.5932 19 8 2.8498 -10.9983 -1.8588 20 6 5.0662 -11.7668 -1.6002 21 6 4.4542 -13.0944 -1.9661 22 6 4.3279 -13.5858 -3.2118 23 6 3.7041 -14.8490 -3.0926 24 6 3.4860 -15.0537 -1.7811 25 8 3.9473 -13.9901 -1.1031 26 6 3.9106 -7.0293 -1.5387 27 6 2.8288 -5.9489 -1.4706 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.7037 -4.9702 0.9428 31 1 0.5359 -4.8742 -0.8266 32 1 1.0434 -7.2425 1.0720 33 1 0.7887 -7.4464 -0.6777 34 1 2.0841 -9.3427 0.2440 35 1 3.3121 -8.2105 0.8615 36 1 2.5449 -8.6116 -2.0675 37 1 5.2308 -9.1964 -1.0792 38 1 5.8318 -11.5063 -2.3310 39 1 5.5171 -11.8347 -0.6101 40 1 4.6435 -13.1077 -4.1273 41 1 3.4505 -15.5203 -3.8997 42 1 3.0230 -15.9274 -1.3466 43 1 4.3728 -7.0196 -2.5258 44 1 4.6683 -6.8339 -0.7800 45 1 2.0789 -6.1369 -2.2390 46 1 3.2813 -4.9712 -1.6361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229670538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:16 Heat of formation + Delta-G solvation = -79.097597 kcal Electronic energy + Delta-G solvation = -28030.357031 eV Core-core repulsion = 23920.473368 eV Total energy + Delta-G solvation = -4109.883663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.46670 -41.15040 -40.34447 -39.01873 -36.22902 -35.71119 -34.14750 -33.44597 -33.20762 -32.27842 -31.83556 -28.92534 -27.84010 -26.26490 -24.33081 -23.88816 -22.67415 -21.98494 -21.28896 -21.02335 -20.75357 -19.85224 -18.48109 -18.14865 -17.74780 -17.34603 -16.76299 -16.59501 -16.46557 -16.32453 -16.20505 -15.59827 -15.37227 -15.28737 -15.00190 -14.78629 -14.45418 -14.19480 -13.91661 -13.73182 -13.66224 -13.53606 -13.47255 -13.20394 -12.94166 -12.71106 -12.68584 -12.43505 -12.37508 -12.18583 -12.11402 -11.82438 -11.61439 -11.38124 -11.01954 -10.80907 -10.26070 -10.07982 -9.97554 -9.37569 -9.21195 -8.44243 -5.92821 0.77086 1.41099 1.42782 1.53639 1.60322 1.68430 2.03797 2.08163 2.29567 2.36200 2.75122 3.22693 3.39774 3.61304 3.70588 3.86091 3.95283 4.08770 4.15641 4.18284 4.19276 4.30207 4.36474 4.39747 4.46002 4.49843 4.52572 4.56051 4.64925 4.71962 4.91454 4.94172 4.97314 5.02602 5.05015 5.12749 5.23280 5.30159 5.42755 5.49376 5.62826 5.89477 6.09424 6.21479 6.21613 6.56022 6.63070 7.15175 7.24691 7.59279 8.14753 8.72963 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.043062 B = 0.001718 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.066936 B =16291.066282 C =16559.766228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.081 0.919 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.611 6.611 12 C 0.056 3.944 13 N -0.529 5.529 14 C 0.059 3.941 15 C -0.115 4.115 16 C 0.152 3.848 17 N -0.709 5.709 18 C 0.513 3.487 19 O -0.580 6.580 20 C -0.055 4.055 21 C -0.016 4.016 22 C -0.214 4.214 23 C -0.230 4.230 24 C -0.045 4.045 25 O -0.194 6.194 26 C -0.106 4.106 27 C 0.058 3.942 28 H 0.277 0.723 29 H 0.395 0.605 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.419 0.581 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.233 0.767 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.031 0.969 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 -26.879 -4.043 28.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.461 4.461 8 H 0.099 0.901 9 N -0.213 5.213 10 C 0.230 3.770 11 O -0.496 6.496 12 C -0.075 4.075 13 N -0.254 5.254 14 C -0.069 4.069 15 C -0.154 4.154 16 C 0.047 3.953 17 N -0.361 5.361 18 C 0.300 3.700 19 O -0.460 6.460 20 C -0.094 4.094 21 C -0.066 4.066 22 C -0.233 4.233 23 C -0.249 4.249 24 C -0.112 4.112 25 O -0.091 6.091 26 C -0.144 4.144 27 C -0.070 4.070 28 H 0.086 0.914 29 H 0.228 0.772 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.256 0.744 38 H 0.176 0.824 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.250 0.750 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.049 0.951 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.290 -26.829 -3.574 28.307 hybrid contribution -0.806 0.987 -0.725 1.466 sum 7.484 -25.842 -4.299 27.246 Atomic orbital electron populations 1.69672 1.06866 1.29265 1.50498 1.26037 0.96520 1.02418 0.96400 0.84987 0.77722 0.76672 0.78941 1.19682 1.19691 1.19697 1.19635 0.92732 0.83947 1.49803 0.90129 1.41952 1.09278 1.04742 1.65374 1.20702 0.88336 0.85756 0.82177 1.90467 1.15448 1.87763 1.55945 1.21730 0.93487 0.88802 1.03479 1.61517 1.31339 1.01773 1.30781 1.22115 0.95432 0.87604 1.01758 1.21852 0.98528 0.97320 0.97673 1.20861 0.90115 0.86872 0.97419 1.45898 1.12951 1.06983 1.70267 1.20957 0.89749 0.83774 0.75516 1.90737 1.23329 1.81950 1.49941 1.20236 0.96386 0.84304 1.08466 1.21996 1.03059 0.93069 0.88462 1.21875 1.05993 0.97515 0.97893 1.22167 1.05926 0.98966 0.97836 1.24722 1.02737 0.91915 0.91856 1.83979 1.60436 1.26118 1.38537 1.21700 0.97943 0.91513 1.03249 1.22044 0.96557 1.00048 0.88381 0.91401 0.77156 0.87205 0.91922 0.89410 0.94604 0.91499 0.90520 0.91386 0.74366 0.82446 0.84486 0.82548 0.81715 0.75045 0.89536 0.90299 0.95129 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 13.05 21.66 0.28 -49.60 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.58 -29.50 5.29 -306.98 -1.62 -31.12 16 10 C 0.44 20.90 7.31 87.66 0.64 21.54 16 11 O -0.61 -32.92 14.29 -3.07 -0.04 -32.96 16 12 C 0.06 1.96 5.45 85.56 0.47 2.43 16 13 N -0.53 -16.87 4.35 -900.94 -3.92 -20.78 16 14 C 0.06 1.48 5.46 86.33 0.47 1.96 16 15 C -0.11 -2.60 5.67 30.65 0.17 -2.43 16 16 C 0.15 3.27 2.52 45.07 0.11 3.38 16 17 N -0.71 -11.16 5.08 -442.12 -2.25 -13.40 16 18 C 0.51 9.81 7.79 87.66 0.68 10.50 16 19 O -0.58 -17.17 15.70 -3.05 -0.05 -17.22 16 20 C -0.05 -0.64 6.23 29.10 0.18 -0.46 16 21 C -0.02 -0.29 5.81 24.83 0.14 -0.15 16 22 C -0.21 -3.90 10.81 22.19 0.24 -3.66 16 23 C -0.23 -3.80 10.91 22.19 0.24 -3.56 16 24 C -0.05 -0.72 12.09 66.97 0.81 0.09 16 25 O -0.19 -4.03 10.65 -2.60 -0.03 -4.06 16 26 C -0.11 -2.43 5.57 30.65 0.17 -2.26 16 27 C 0.06 1.80 5.12 86.33 0.44 2.24 16 28 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.39 19.35 7.90 -92.71 -0.73 18.62 16 30 H 0.11 3.40 7.98 -2.39 -0.02 3.38 16 31 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 32 H 0.09 2.03 8.01 -2.39 -0.02 2.01 16 33 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.74 7.58 -2.39 -0.02 1.72 16 37 H 0.42 3.80 8.61 -92.71 -0.80 3.00 16 38 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 41 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 42 H 0.23 1.73 8.06 -2.91 -0.02 1.71 16 43 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 2.52 6.06 -2.39 -0.01 2.51 16 Total: -1.00 -77.61 384.21 -0.05 -77.66 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.52 Total: 35.26 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.06 Total: 11.41 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -7.50 Total: -114.91 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.12 Total: -54.24 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -77.61 -0.05 -77.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229670538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.435 kcal (2) G-P(sol) polarization free energy of solvation -77.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds