Wall clock time and date at job start Tue Mar 31 2020 18:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 17 17 H 1.09002 * 109.47452 * 59.99785 * 16 10 9 18 18 N 1.46495 * 109.47436 * 300.00014 * 16 10 9 19 19 C 1.34770 * 120.00960 * 155.00040 * 18 16 10 20 20 O 1.21290 * 119.99674 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00782 * 180.02562 * 19 18 16 22 22 N 1.46501 * 109.47070 * 179.97438 * 21 19 18 23 23 C 1.34773 * 119.99704 * 179.97438 * 22 21 19 24 24 O 1.21698 * 120.00085 * 0.02562 * 23 22 21 25 25 C 1.46657 * 120.00051 * 180.02562 * 23 22 21 26 26 C 1.36546 * 125.98913 * 180.02562 * 25 23 22 27 27 C 1.40360 * 106.70988 * 179.97438 * 26 25 23 28 28 C 1.35126 * 107.11524 * 359.97438 * 27 26 25 29 29 O 1.33938 * 108.76682 * 359.77549 * 28 27 26 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 33 33 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 34 34 H 1.08994 * 109.47099 * 300.00232 * 13 12 10 35 35 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 38 38 H 1.08993 * 109.47008 * 299.99431 * 15 14 13 39 39 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 40 40 H 0.97002 * 119.99681 * 335.00269 * 18 16 10 41 41 H 1.08997 * 109.46897 * 299.99837 * 21 19 18 42 42 H 1.09002 * 109.46566 * 59.99847 * 21 19 18 43 43 H 0.96997 * 120.00036 * 0.02562 * 22 21 19 44 44 H 1.08005 * 126.64211 * 359.97438 * 26 25 23 45 45 H 1.07998 * 126.44572 * 180.02562 * 27 26 25 46 46 H 1.08003 * 125.61965 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 6 3.1873 -5.3528 -1.4594 14 6 2.3106 -6.4516 -0.8553 15 6 1.9467 -6.0802 0.5837 16 6 1.1807 -4.7552 0.5904 17 1 0.2700 -4.8584 0.0004 18 7 0.8323 -4.3998 1.9682 19 6 -0.2856 -4.8995 2.5311 20 8 -1.0032 -5.6440 1.8970 21 6 -0.6443 -4.5334 3.9482 22 7 -1.8941 -5.1995 4.3232 23 6 -2.4113 -5.0179 5.5545 24 8 -1.8404 -4.3003 6.3545 25 6 -3.6621 -5.6851 5.9301 26 6 -4.2922 -5.5876 7.1376 27 6 -5.4453 -6.3839 7.0565 28 6 -5.4685 -6.9252 5.8186 29 8 -4.3952 -6.4976 5.1411 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 1.5111 -4.1311 -2.0425 33 1 3.0467 -3.2455 -1.8827 34 1 4.0980 -5.2492 -0.8696 35 1 3.4468 -5.6170 -2.4846 36 1 2.8557 -7.3954 -0.8606 37 1 1.3998 -6.5551 -1.4451 38 1 2.8574 -5.9768 1.1735 39 1 1.3225 -6.8633 1.0142 40 1 1.4063 -3.8047 2.4755 41 1 0.1534 -4.8526 4.6189 42 1 -0.7718 -3.4535 4.0233 43 1 -2.3489 -5.7718 3.6857 44 1 -3.9665 -5.0097 7.9899 45 1 -6.1769 -6.5348 7.8365 46 1 -6.2295 -7.5897 5.4369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230056944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:27 Heat of formation + Delta-G solvation = -56.619711 kcal Electronic energy + Delta-G solvation = -28663.665565 eV Core-core repulsion = 24554.756616 eV Total energy + Delta-G solvation = -4108.908949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.91187 -40.17609 -39.26672 -37.89813 -34.69740 -34.09734 -33.85256 -33.28369 -31.19426 -30.63971 -29.61735 -28.15927 -27.03750 -23.77704 -23.42366 -22.16689 -21.92283 -21.12242 -20.52511 -20.27272 -19.65343 -18.86492 -17.33705 -16.86206 -16.61599 -16.52262 -16.02053 -15.67670 -15.56775 -14.95001 -14.47165 -14.38895 -14.03529 -13.81707 -13.63397 -13.39550 -13.25882 -13.13022 -12.99479 -12.92690 -12.69913 -12.66253 -12.14405 -12.08646 -11.12506 -10.94977 -10.90153 -10.79687 -10.63590 -10.53090 -10.37197 -10.33148 -10.19795 -9.87364 -9.70543 -9.65884 -9.40579 -8.96187 -8.92458 -8.70963 -7.03257 -5.81732 -3.11820 0.83110 2.09277 2.40413 2.72559 2.88201 3.00747 3.39809 3.45201 3.47252 3.53391 4.43694 4.52362 4.63038 4.71514 4.82737 5.01160 5.09264 5.24584 5.26792 5.35403 5.42159 5.46844 5.48794 5.49545 5.63244 5.66961 5.75621 5.84260 5.90238 5.92879 6.03835 6.05551 6.07925 6.26043 6.40948 6.42019 6.44061 6.53499 6.55590 6.77024 6.83617 7.01801 7.30705 7.64263 7.70695 7.91389 8.34533 8.36184 9.47262 10.02640 10.37741 11.40068 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.002845 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.190772 B = 9841.178486 C =11834.275266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.052 0.948 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.141 3.859 17 H 0.086 0.914 18 N -0.699 5.699 19 C 0.511 3.489 20 O -0.548 6.548 21 C 0.098 3.902 22 N -0.703 5.703 23 C 0.604 3.396 24 O -0.521 6.521 25 C -0.075 4.075 26 C -0.121 4.121 27 C -0.227 4.227 28 C -0.006 4.006 29 O -0.161 6.161 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.407 0.593 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.417 0.583 44 H 0.161 0.839 45 H 0.157 0.843 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 -16.640 9.312 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.070 0.930 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.036 3.964 17 H 0.104 0.896 18 N -0.348 5.348 19 C 0.296 3.704 20 O -0.427 6.427 21 C -0.029 4.029 22 N -0.357 5.357 23 C 0.390 3.610 24 O -0.399 6.399 25 C -0.127 4.127 26 C -0.141 4.141 27 C -0.246 4.246 28 C -0.076 4.076 29 O -0.056 6.056 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.242 0.758 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.255 0.745 44 H 0.179 0.821 45 H 0.174 0.826 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.477 -16.536 9.107 19.402 hybrid contribution 0.001 1.066 0.006 1.066 sum -4.476 -15.470 9.113 18.504 Atomic orbital electron populations 1.69665 1.05094 1.25719 1.57162 1.24742 0.95454 0.97662 1.02786 0.86231 0.78658 0.83993 0.77501 1.21781 1.21814 1.20765 1.19188 0.90906 0.83956 1.43285 0.91178 1.42415 1.05782 0.99473 1.88580 1.20472 0.93933 0.85718 0.93678 0.93046 1.22223 0.99971 0.95569 0.99642 1.21587 0.98534 0.95645 1.00035 1.21469 0.99941 0.98064 0.95703 1.21879 1.00023 0.97114 0.97270 1.21364 0.99171 0.94208 0.81658 0.89640 1.45794 1.24708 1.48875 1.15422 1.20284 0.81299 0.80539 0.88234 1.90674 1.50847 1.37252 1.63914 1.21167 0.87555 1.00132 0.94086 1.45560 1.25258 1.50123 1.14784 1.16474 0.81887 0.80584 0.82049 1.90903 1.59905 1.38227 1.50879 1.22012 0.96806 1.01756 0.92123 1.21986 0.94601 1.00100 0.97458 1.21868 1.00949 1.02961 0.98848 1.24449 0.90126 1.00899 0.92108 1.84107 1.30723 1.50150 1.40628 0.93467 0.78161 0.92450 0.91547 0.92350 0.92656 0.92354 0.91964 0.91935 0.91945 0.75796 0.88091 0.87429 0.74455 0.82125 0.82556 0.77301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.30 9.93 -15.06 -0.15 -6.44 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -16.69 4.95 -53.42 -0.26 -16.95 16 10 C 0.17 3.10 2.29 -67.93 -0.16 2.95 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.22 5.50 -26.72 -0.15 -2.37 16 13 C -0.12 -1.57 5.92 -26.73 -0.16 -1.72 16 14 C -0.11 -1.40 5.92 -26.73 -0.16 -1.56 16 15 C -0.12 -1.64 5.50 -26.70 -0.15 -1.79 16 16 C 0.14 2.24 1.98 -67.91 -0.13 2.11 16 17 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 18 N -0.70 -10.48 4.91 -53.78 -0.26 -10.74 16 19 C 0.51 7.77 7.86 -10.99 -0.09 7.69 16 20 O -0.55 -9.71 15.33 5.55 0.09 -9.62 16 21 C 0.10 1.29 6.15 -5.19 -0.03 1.25 16 22 N -0.70 -9.44 5.52 -62.81 -0.35 -9.79 16 23 C 0.60 8.51 7.79 -12.86 -0.10 8.41 16 24 O -0.52 -8.58 16.86 5.19 0.09 -8.50 16 25 C -0.07 -0.92 7.13 -36.80 -0.26 -1.18 16 26 C -0.12 -1.28 10.62 -39.39 -0.42 -1.69 16 27 C -0.23 -1.82 10.87 -39.89 -0.43 -2.26 16 28 C -0.01 -0.04 12.08 29.63 0.36 0.31 16 29 O -0.16 -1.76 10.40 4.99 0.05 -1.71 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.38 9.85 7.80 -40.82 -0.32 9.54 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.41 5.74 8.60 -40.82 -0.35 5.38 16 41 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.42 5.56 7.19 -40.82 -0.29 5.27 16 44 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 45 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.21 0.71 8.06 -52.48 -0.42 0.28 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -32.34 387.94 -8.04 -40.38 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -6.82 Total: 17.53 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.12 Total: 3.33 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -0.15 Total: -64.02 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.22 Total: -19.83 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.34 -8.04 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230056944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.240 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds