Wall clock time and date at job start Tue Mar 31 2020 18:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 17 17 H 1.09002 * 109.47452 * 59.99785 * 16 10 9 18 18 N 1.46495 * 109.47436 * 300.00014 * 16 10 9 19 19 C 1.34770 * 120.00960 * 155.00040 * 18 16 10 20 20 O 1.21290 * 119.99674 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00782 * 180.02562 * 19 18 16 22 22 N 1.46501 * 109.47070 * 179.97438 * 21 19 18 23 23 C 1.34773 * 119.99704 * 179.97438 * 22 21 19 24 24 O 1.21698 * 120.00085 * 0.02562 * 23 22 21 25 25 C 1.46657 * 120.00051 * 180.02562 * 23 22 21 26 26 C 1.36546 * 125.98913 * 180.02562 * 25 23 22 27 27 C 1.40360 * 106.70988 * 179.97438 * 26 25 23 28 28 C 1.35126 * 107.11524 * 359.97438 * 27 26 25 29 29 O 1.33938 * 108.76682 * 359.77549 * 28 27 26 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 33 33 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 34 34 H 1.08994 * 109.47099 * 300.00232 * 13 12 10 35 35 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 38 38 H 1.08993 * 109.47008 * 299.99431 * 15 14 13 39 39 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 40 40 H 0.97002 * 119.99681 * 335.00269 * 18 16 10 41 41 H 1.08997 * 109.46897 * 299.99837 * 21 19 18 42 42 H 1.09002 * 109.46566 * 59.99847 * 21 19 18 43 43 H 0.96997 * 120.00036 * 0.02562 * 22 21 19 44 44 H 1.08005 * 126.64211 * 359.97438 * 26 25 23 45 45 H 1.07998 * 126.44572 * 180.02562 * 27 26 25 46 46 H 1.08003 * 125.61965 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 6 3.1873 -5.3528 -1.4594 14 6 2.3106 -6.4516 -0.8553 15 6 1.9467 -6.0802 0.5837 16 6 1.1807 -4.7552 0.5904 17 1 0.2700 -4.8584 0.0004 18 7 0.8323 -4.3998 1.9682 19 6 -0.2856 -4.8995 2.5311 20 8 -1.0032 -5.6440 1.8970 21 6 -0.6443 -4.5334 3.9482 22 7 -1.8941 -5.1995 4.3232 23 6 -2.4113 -5.0179 5.5545 24 8 -1.8404 -4.3003 6.3545 25 6 -3.6621 -5.6851 5.9301 26 6 -4.2922 -5.5876 7.1376 27 6 -5.4453 -6.3839 7.0565 28 6 -5.4685 -6.9252 5.8186 29 8 -4.3952 -6.4976 5.1411 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 1.5111 -4.1311 -2.0425 33 1 3.0467 -3.2455 -1.8827 34 1 4.0980 -5.2492 -0.8696 35 1 3.4468 -5.6170 -2.4846 36 1 2.8557 -7.3954 -0.8606 37 1 1.3998 -6.5551 -1.4451 38 1 2.8574 -5.9768 1.1735 39 1 1.3225 -6.8633 1.0142 40 1 1.4063 -3.8047 2.4755 41 1 0.1534 -4.8526 4.6189 42 1 -0.7718 -3.4535 4.0233 43 1 -2.3489 -5.7718 3.6857 44 1 -3.9665 -5.0097 7.9899 45 1 -6.1769 -6.5348 7.8365 46 1 -6.2295 -7.5897 5.4369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230056944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:26 Heat of formation + Delta-G solvation = -80.278353 kcal Electronic energy + Delta-G solvation = -28664.691480 eV Core-core repulsion = 24554.756616 eV Total energy + Delta-G solvation = -4109.934865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.66436 -41.40134 -40.43346 -39.20340 -35.86202 -35.75608 -35.17604 -34.04376 -32.99552 -31.58814 -30.72519 -29.60904 -28.24861 -25.62918 -24.38650 -23.30081 -22.70577 -22.48776 -21.58612 -21.43286 -20.85042 -19.87554 -19.14565 -17.94929 -17.76891 -17.49171 -17.07095 -16.87292 -16.76133 -16.46353 -15.73440 -15.67258 -15.36108 -15.28861 -14.87212 -14.61732 -14.36371 -14.13370 -14.08656 -13.93861 -13.90319 -13.57313 -13.52301 -13.42715 -12.92523 -12.80535 -12.24456 -12.16717 -12.03397 -12.01018 -11.67900 -11.63455 -11.43196 -11.20229 -11.06361 -11.03662 -10.80435 -10.50207 -10.00267 -9.68256 -8.99091 -7.91417 -5.19768 -0.01950 1.40519 1.46258 1.48818 1.49148 1.52729 1.57332 1.94306 2.02122 2.39488 2.57069 3.41924 3.53520 3.68752 3.72971 3.84249 3.94956 4.09598 4.14648 4.22566 4.26961 4.30289 4.33983 4.44858 4.50794 4.60262 4.60419 4.70867 4.89503 4.93191 4.96073 4.99103 5.02660 5.16525 5.25322 5.30583 5.32030 5.38883 5.46772 5.53148 5.56088 5.67020 5.80518 6.27364 6.28627 6.47209 6.83964 7.11442 7.35842 8.09868 8.33255 9.31454 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.002845 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.190772 B = 9841.178486 C =11834.275266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.966 3.034 4 H -0.293 1.293 5 H -0.302 1.302 6 H -0.266 1.266 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.171 3.829 11 H 0.060 0.940 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.111 4.111 15 C -0.115 4.115 16 C 0.149 3.851 17 H 0.057 0.943 18 N -0.697 5.697 19 C 0.513 3.487 20 O -0.574 6.574 21 C 0.103 3.897 22 N -0.702 5.702 23 C 0.603 3.397 24 O -0.555 6.555 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.232 4.232 28 C 0.010 3.990 29 O -0.176 6.176 30 H 0.247 0.753 31 H 0.369 0.631 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.412 0.588 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.417 0.583 44 H 0.163 0.837 45 H 0.187 0.813 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 -18.643 9.927 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.796 3.204 4 H -0.220 1.220 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.370 5.370 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.154 4.154 16 C 0.044 3.956 17 H 0.075 0.925 18 N -0.346 5.346 19 C 0.299 3.701 20 O -0.455 6.455 21 C -0.023 4.023 22 N -0.356 5.356 23 C 0.391 3.609 24 O -0.436 6.436 25 C -0.166 4.166 26 C -0.140 4.140 27 C -0.251 4.251 28 C -0.059 4.059 29 O -0.071 6.071 30 H 0.056 0.944 31 H 0.200 0.800 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.248 0.752 41 H 0.141 0.859 42 H 0.119 0.881 43 H 0.256 0.744 44 H 0.181 0.819 45 H 0.205 0.795 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -3.707 -18.579 9.714 21.291 hybrid contribution -0.288 1.571 -0.190 1.608 sum -3.994 -17.008 9.524 19.898 Atomic orbital electron populations 1.69828 1.06617 1.25668 1.59878 1.25467 0.96139 1.00811 1.04247 0.85246 0.77900 0.80153 0.77092 1.22045 1.22919 1.19090 1.19565 0.91384 0.84846 1.40233 0.90255 1.42582 1.05167 1.00736 1.88549 1.20694 0.93970 0.84240 0.94869 0.92178 1.22094 0.99498 0.97478 0.97846 1.21520 0.98419 0.93345 1.01549 1.21476 0.99838 0.99004 0.94545 1.21818 1.00147 0.94938 0.98455 1.21215 0.97848 0.95035 0.81541 0.92515 1.45782 1.24837 1.48856 1.15108 1.20549 0.80814 0.79955 0.88768 1.90657 1.51573 1.38531 1.64722 1.21144 0.88327 0.99741 0.93130 1.45568 1.25259 1.49972 1.14758 1.16723 0.82368 0.80148 0.81613 1.90865 1.61189 1.39870 1.51652 1.21727 0.97365 1.04225 0.93241 1.22290 0.95184 0.99708 0.96814 1.22244 1.00597 1.02311 0.99949 1.25444 0.89124 0.99584 0.91771 1.84097 1.31655 1.50230 1.41144 0.94408 0.79998 0.94083 0.93252 0.90953 0.90996 0.89494 0.92789 0.90181 0.92131 0.75185 0.85900 0.88094 0.74436 0.81931 0.79539 0.72950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 4 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.23 -11.88 9.93 84.04 0.83 -11.05 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.73 -34.32 4.95 -322.93 -1.60 -35.92 16 10 C 0.17 6.07 2.29 44.99 0.10 6.17 16 11 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 12 C -0.13 -4.19 5.50 30.60 0.17 -4.03 16 13 C -0.11 -2.59 5.92 30.60 0.18 -2.41 16 14 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 15 C -0.11 -2.81 5.50 30.61 0.17 -2.65 16 16 C 0.15 4.70 1.98 45.01 0.09 4.79 16 17 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 18 N -0.70 -20.89 4.91 -442.47 -2.17 -23.06 16 19 C 0.51 15.82 7.86 87.66 0.69 16.51 16 20 O -0.57 -20.74 15.33 -3.06 -0.05 -20.79 16 21 C 0.10 2.78 6.15 85.63 0.53 3.30 16 22 N -0.70 -19.43 5.52 -470.84 -2.60 -22.03 16 23 C 0.60 17.58 7.79 86.44 0.67 18.25 16 24 O -0.55 -18.93 16.86 -4.34 -0.07 -19.00 16 25 C -0.11 -2.82 7.13 24.07 0.17 -2.65 16 26 C -0.12 -2.45 10.62 22.39 0.24 -2.21 16 27 C -0.23 -3.17 10.87 22.07 0.24 -2.93 16 28 C 0.01 0.13 12.08 67.10 0.81 0.94 16 29 O -0.18 -3.70 10.40 -5.05 -0.05 -3.75 16 30 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 31 H 0.37 19.56 7.80 -92.71 -0.72 18.84 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.41 11.49 8.60 -92.71 -0.80 10.70 16 41 H 0.12 2.74 8.14 -2.39 -0.02 2.73 16 42 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.42 11.50 7.19 -92.71 -0.67 10.83 16 44 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 46 H 0.25 0.63 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -72.20 387.94 0.14 -72.06 By element: Atomic # 1 Polarization: 48.54 SS G_CDS: -1.16 Total: 47.37 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 5.54 Total: 16.11 kcal Atomic # 7 Polarization: -133.23 SS G_CDS: -6.09 Total: -139.31 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.17 Total: -43.54 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.20 0.14 -72.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230056944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.220 kcal (2) G-P(sol) polarization free energy of solvation -72.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds