Wall clock time and date at job start Tue Mar 31 2020 18:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99791 * 2 1 4 4 H 1.48501 * 109.47462 * 269.99936 * 3 2 1 5 5 H 1.48498 * 109.47327 * 30.00287 * 3 2 1 6 6 H 1.48505 * 109.47146 * 150.00122 * 3 2 1 7 7 C 1.38807 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00151 * 163.07376 * 7 2 1 9 9 N 1.36938 * 120.00118 * 343.06768 * 7 2 1 10 10 C 1.46926 * 120.62836 * 331.85216 * 9 7 2 11 11 C 1.53192 * 108.77538 * 233.58206 * 10 9 7 12 12 C 1.53046 * 109.31299 * 305.36659 * 11 10 9 13 13 N 1.46499 * 109.45729 * 181.38145 * 12 11 10 14 14 C 1.34776 * 119.99836 * 154.96948 * 13 12 11 15 15 O 1.21283 * 119.99815 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00442 * 180.02562 * 14 13 12 17 17 C 1.52994 * 109.47635 * 180.02562 * 16 14 13 18 18 N 1.46492 * 109.47413 * 180.02562 * 17 16 14 19 19 C 1.34776 * 120.00299 * 179.97438 * 18 17 16 20 20 O 1.21703 * 119.99719 * 359.97438 * 19 18 17 21 21 C 1.46654 * 120.00553 * 179.97438 * 19 18 17 22 22 C 1.36545 * 125.99397 * 179.97438 * 21 19 18 23 23 C 1.40357 * 106.70839 * 180.02562 * 22 21 19 24 24 C 1.35125 * 107.11968 * 359.97438 * 23 22 21 25 25 O 1.33936 * 108.76471 * 0.02562 * 24 23 22 26 26 C 1.53038 * 109.52475 * 61.37212 * 12 11 10 27 27 C 1.46926 * 120.63006 * 151.82923 * 9 7 2 28 28 H 0.97006 * 119.99867 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.58769 * 113.79573 * 10 9 7 30 30 H 1.08994 * 109.70867 * 353.44602 * 10 9 7 31 31 H 1.08997 * 109.49889 * 185.41674 * 11 10 9 32 32 H 1.09001 * 109.49852 * 65.32063 * 11 10 9 33 33 H 1.08997 * 109.46080 * 301.35932 * 12 11 10 34 34 H 0.97001 * 120.00510 * 334.98221 * 13 12 11 35 35 H 1.09004 * 109.46646 * 59.99939 * 16 14 13 36 36 H 1.09006 * 109.46716 * 300.00929 * 16 14 13 37 37 H 1.09004 * 109.47236 * 59.99634 * 17 16 14 38 38 H 1.09006 * 109.46853 * 300.00225 * 17 16 14 39 39 H 0.97003 * 120.00144 * 359.97438 * 18 17 16 40 40 H 1.07996 * 126.64040 * 0.02562 * 22 21 19 41 41 H 1.08002 * 126.43778 * 179.97438 * 23 22 21 42 42 H 1.08001 * 125.61780 * 180.26293 * 24 23 22 43 43 H 1.08999 * 109.49730 * 58.57791 * 26 12 11 44 44 H 1.09000 * 109.49820 * 178.67477 * 26 12 11 45 45 H 1.09008 * 109.58311 * 246.20228 * 27 9 7 46 46 H 1.08992 * 109.58488 * 6.48357 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3702 -2.3625 0.3443 10 6 0.2262 -2.3408 1.2660 11 6 0.4975 -3.3208 2.4118 12 6 0.8120 -4.7021 1.8326 13 7 1.0397 -5.6496 2.9265 14 6 0.8357 -6.9673 2.7301 15 8 0.4641 -7.3686 1.6476 16 6 1.0693 -7.9420 3.8554 17 6 0.7677 -9.3617 3.3714 18 7 0.9942 -10.3091 4.4655 19 6 0.7901 -11.6268 4.2691 20 8 0.4172 -12.0295 3.1829 21 6 1.0174 -12.5754 5.3642 22 6 0.8492 -13.9290 5.3013 23 6 1.1767 -14.4356 6.5686 24 6 1.5265 -13.3826 7.3397 25 8 1.4291 -12.2634 6.6106 26 6 2.0676 -4.6177 0.9617 27 6 1.8140 -3.6527 -0.2007 28 1 -0.4850 0.8401 0.0004 29 1 -0.6770 -2.6410 0.7346 30 1 0.0967 -1.3359 1.6676 31 1 -0.3831 -3.3862 3.0508 32 1 1.3472 -2.9697 2.9973 33 1 -0.0280 -5.0417 1.2268 34 1 1.3370 -5.3287 3.7923 35 1 0.4141 -7.6958 4.6911 36 1 2.1086 -7.8816 4.1785 37 1 1.4231 -9.6076 2.5358 38 1 -0.2715 -9.4223 3.0480 39 1 1.2911 -9.9881 5.3314 40 1 0.5267 -14.4991 4.4427 41 1 1.1534 -15.4723 6.8706 42 1 1.8375 -13.4352 8.3727 43 1 2.9023 -4.2542 1.5610 44 1 2.3047 -5.6063 0.5684 45 1 1.0402 -4.0599 -0.8518 46 1 2.7332 -3.5124 -0.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230203697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:56 Heat of formation + Delta-G solvation = -40.608048 kcal Electronic energy + Delta-G solvation = -27647.544018 eV Core-core repulsion = 23539.329387 eV Total energy + Delta-G solvation = -4108.214631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.13388 -40.09546 -39.52537 -37.44551 -35.59730 -34.45023 -33.55065 -32.33266 -31.57582 -30.29865 -29.94754 -29.21256 -25.59989 -24.52662 -22.94222 -22.28936 -22.18175 -21.74428 -20.86749 -20.21083 -19.37074 -18.86780 -17.31959 -16.85316 -16.75744 -16.71776 -16.10224 -15.75182 -15.72231 -14.90963 -14.76052 -14.50487 -13.93883 -13.74347 -13.61155 -13.50176 -13.47504 -13.41036 -13.12905 -12.95008 -12.60869 -12.44027 -12.16690 -11.78591 -11.48155 -11.14534 -10.89206 -10.73370 -10.72075 -10.54585 -10.52239 -10.30537 -10.06388 -9.92947 -9.73203 -9.58063 -9.50125 -9.13327 -8.76168 -8.47510 -6.69766 -5.81213 -3.23374 0.61124 1.88796 2.18625 2.67649 2.69269 2.79511 3.35517 3.41101 3.43269 3.45239 4.18632 4.39650 4.42753 4.48107 4.58884 4.74720 4.78674 5.13108 5.15039 5.29504 5.31801 5.40399 5.41303 5.48204 5.54729 5.59132 5.69213 5.83262 5.84746 5.92533 6.05109 6.24220 6.30440 6.32733 6.50138 6.53349 6.56408 6.78087 6.87457 6.97712 7.02240 7.29256 7.55888 7.66349 7.67727 7.78168 8.31182 8.42985 9.19158 9.82375 10.39417 11.27750 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.041281 B = 0.001608 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.118251 B =17408.859881 C =17641.733879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.150 3.850 13 N -0.723 5.723 14 C 0.513 3.487 15 O -0.538 6.538 16 C -0.155 4.155 17 C 0.133 3.867 18 N -0.721 5.721 19 C 0.602 3.398 20 O -0.513 6.513 21 C -0.079 4.079 22 C -0.119 4.119 23 C -0.225 4.225 24 C -0.007 4.007 25 O -0.165 6.165 26 C -0.139 4.139 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.021 0.979 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.396 0.604 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.405 0.595 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.211 0.789 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.021 0.979 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 -24.050 18.898 30.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.186 4.186 12 C 0.047 3.953 13 N -0.373 5.373 14 C 0.298 3.702 15 O -0.414 6.414 16 C -0.196 4.196 17 C 0.010 3.990 18 N -0.372 5.372 19 C 0.388 3.612 20 O -0.390 6.390 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.244 4.244 24 C -0.077 4.077 25 O -0.061 6.061 26 C -0.179 4.179 27 C 0.020 3.980 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.239 0.761 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.228 0.772 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.511 -24.120 17.359 29.823 hybrid contribution 0.728 0.934 1.042 1.578 sum 3.239 -23.186 18.401 29.778 Atomic orbital electron populations 1.70029 1.05257 1.25535 1.53930 1.25054 0.95285 0.98424 1.00873 0.86307 0.79114 0.83630 0.77761 1.21366 1.21571 1.20525 1.19181 0.92584 0.84754 1.41727 0.91668 1.44087 1.35816 1.01659 1.49957 1.20738 0.88924 0.97897 0.87692 1.22535 1.00496 0.94741 1.00839 1.21071 0.98590 0.88224 0.87448 1.46341 1.68543 1.06460 1.15920 1.20206 0.77670 0.83210 0.89097 1.90755 1.46019 1.78240 1.26428 1.21824 1.04611 0.94177 0.98947 1.21140 1.03633 0.85437 0.88766 1.45881 1.68909 1.06272 1.16157 1.16508 0.78002 0.81300 0.85417 1.90936 1.46437 1.78068 1.23595 1.22103 1.11087 0.95299 0.84644 1.22026 1.00231 0.92608 0.99135 1.21898 1.07666 1.00905 0.93933 1.24443 1.02422 0.82893 0.97901 1.84054 1.66127 1.35143 1.20753 1.22369 0.97086 0.99560 0.98876 1.20878 0.97948 0.86551 0.92642 0.93600 0.96108 0.89028 0.92755 0.92180 0.89959 0.77042 0.88220 0.88210 0.89914 0.89931 0.76063 0.82112 0.82497 0.77239 0.92354 0.92715 0.96158 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 11.19 55.49 0.62 -25.26 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.66 2.99 -172.32 -0.52 -15.17 16 10 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 11 C -0.15 -2.58 5.55 -26.61 -0.15 -2.73 16 12 C 0.15 2.51 2.42 -67.89 -0.16 2.35 16 13 N -0.72 -9.14 5.08 -53.77 -0.27 -9.41 16 14 C 0.51 6.62 7.79 -10.99 -0.09 6.53 16 15 O -0.54 -9.40 15.64 5.55 0.09 -9.32 16 16 C -0.16 -1.23 5.81 -27.89 -0.16 -1.39 16 17 C 0.13 1.34 4.96 -4.05 -0.02 1.32 16 18 N -0.72 -6.10 5.55 -61.63 -0.34 -6.44 16 19 C 0.60 6.59 7.79 -12.86 -0.10 6.49 16 20 O -0.51 -7.53 16.87 5.19 0.09 -7.45 16 21 C -0.08 -0.72 7.13 -36.80 -0.26 -0.98 16 22 C -0.12 -0.97 10.62 -39.40 -0.42 -1.39 16 23 C -0.22 -1.26 10.87 -39.89 -0.43 -1.70 16 24 C -0.01 -0.03 12.08 29.62 0.36 0.33 16 25 O -0.17 -1.18 10.40 4.98 0.05 -1.13 16 26 C -0.14 -2.48 5.65 -26.61 -0.15 -2.63 16 27 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 2.36 6.07 -51.93 -0.31 2.04 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 34 H 0.40 3.78 8.60 -40.82 -0.35 3.43 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.40 2.27 8.23 -40.82 -0.34 1.94 16 40 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.16 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.21 0.11 8.06 -52.49 -0.42 -0.31 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -34.84 385.73 -8.21 -43.05 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.85 Total: 2.70 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.86 Total: 6.28 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.51 Total: -56.29 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.23 Total: -17.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.84 -8.21 -43.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230203697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.442 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds