Wall clock time and date at job start Tue Mar 31 2020 18:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99791 * 2 1 4 4 H 1.48501 * 109.47462 * 269.99936 * 3 2 1 5 5 H 1.48498 * 109.47327 * 30.00287 * 3 2 1 6 6 H 1.48505 * 109.47146 * 150.00122 * 3 2 1 7 7 C 1.38807 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00151 * 163.07376 * 7 2 1 9 9 N 1.36938 * 120.00118 * 343.06768 * 7 2 1 10 10 C 1.46926 * 120.62836 * 331.85216 * 9 7 2 11 11 C 1.53192 * 108.77538 * 233.58206 * 10 9 7 12 12 C 1.53046 * 109.31299 * 305.36659 * 11 10 9 13 13 N 1.46499 * 109.45729 * 181.38145 * 12 11 10 14 14 C 1.34776 * 119.99836 * 154.96948 * 13 12 11 15 15 O 1.21283 * 119.99815 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00442 * 180.02562 * 14 13 12 17 17 C 1.52994 * 109.47635 * 180.02562 * 16 14 13 18 18 N 1.46492 * 109.47413 * 180.02562 * 17 16 14 19 19 C 1.34776 * 120.00299 * 179.97438 * 18 17 16 20 20 O 1.21703 * 119.99719 * 359.97438 * 19 18 17 21 21 C 1.46654 * 120.00553 * 179.97438 * 19 18 17 22 22 C 1.36545 * 125.99397 * 179.97438 * 21 19 18 23 23 C 1.40357 * 106.70839 * 180.02562 * 22 21 19 24 24 C 1.35125 * 107.11968 * 359.97438 * 23 22 21 25 25 O 1.33936 * 108.76471 * 0.02562 * 24 23 22 26 26 C 1.53038 * 109.52475 * 61.37212 * 12 11 10 27 27 C 1.46926 * 120.63006 * 151.82923 * 9 7 2 28 28 H 0.97006 * 119.99867 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.58769 * 113.79573 * 10 9 7 30 30 H 1.08994 * 109.70867 * 353.44602 * 10 9 7 31 31 H 1.08997 * 109.49889 * 185.41674 * 11 10 9 32 32 H 1.09001 * 109.49852 * 65.32063 * 11 10 9 33 33 H 1.08997 * 109.46080 * 301.35932 * 12 11 10 34 34 H 0.97001 * 120.00510 * 334.98221 * 13 12 11 35 35 H 1.09004 * 109.46646 * 59.99939 * 16 14 13 36 36 H 1.09006 * 109.46716 * 300.00929 * 16 14 13 37 37 H 1.09004 * 109.47236 * 59.99634 * 17 16 14 38 38 H 1.09006 * 109.46853 * 300.00225 * 17 16 14 39 39 H 0.97003 * 120.00144 * 359.97438 * 18 17 16 40 40 H 1.07996 * 126.64040 * 0.02562 * 22 21 19 41 41 H 1.08002 * 126.43778 * 179.97438 * 23 22 21 42 42 H 1.08001 * 125.61780 * 180.26293 * 24 23 22 43 43 H 1.08999 * 109.49730 * 58.57791 * 26 12 11 44 44 H 1.09000 * 109.49820 * 178.67477 * 26 12 11 45 45 H 1.09008 * 109.58311 * 246.20228 * 27 9 7 46 46 H 1.08992 * 109.58488 * 6.48357 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3702 -2.3625 0.3443 10 6 0.2262 -2.3408 1.2660 11 6 0.4975 -3.3208 2.4118 12 6 0.8120 -4.7021 1.8326 13 7 1.0397 -5.6496 2.9265 14 6 0.8357 -6.9673 2.7301 15 8 0.4641 -7.3686 1.6476 16 6 1.0693 -7.9420 3.8554 17 6 0.7677 -9.3617 3.3714 18 7 0.9942 -10.3091 4.4655 19 6 0.7901 -11.6268 4.2691 20 8 0.4172 -12.0295 3.1829 21 6 1.0174 -12.5754 5.3642 22 6 0.8492 -13.9290 5.3013 23 6 1.1767 -14.4356 6.5686 24 6 1.5265 -13.3826 7.3397 25 8 1.4291 -12.2634 6.6106 26 6 2.0676 -4.6177 0.9617 27 6 1.8140 -3.6527 -0.2007 28 1 -0.4850 0.8401 0.0004 29 1 -0.6770 -2.6410 0.7346 30 1 0.0967 -1.3359 1.6676 31 1 -0.3831 -3.3862 3.0508 32 1 1.3472 -2.9697 2.9973 33 1 -0.0280 -5.0417 1.2268 34 1 1.3370 -5.3287 3.7923 35 1 0.4141 -7.6958 4.6911 36 1 2.1086 -7.8816 4.1785 37 1 1.4231 -9.6076 2.5358 38 1 -0.2715 -9.4223 3.0480 39 1 1.2911 -9.9881 5.3314 40 1 0.5267 -14.4991 4.4427 41 1 1.1534 -15.4723 6.8706 42 1 1.8375 -13.4352 8.3727 43 1 2.9023 -4.2542 1.5610 44 1 2.3047 -5.6063 0.5684 45 1 1.0402 -4.0599 -0.8518 46 1 2.7332 -3.5124 -0.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230203697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:56 Heat of formation + Delta-G solvation = -66.761517 kcal Electronic energy + Delta-G solvation = -27648.678117 eV Core-core repulsion = 23539.329387 eV Total energy + Delta-G solvation = -4109.348731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.63442 -41.13180 -40.49137 -38.99878 -36.50555 -35.95125 -34.06848 -33.96024 -32.58551 -31.75079 -31.19839 -30.37003 -27.12888 -25.69957 -24.03111 -23.79560 -23.13887 -22.65535 -21.65331 -21.28671 -20.83644 -19.61029 -18.83372 -18.06739 -17.46729 -17.34201 -17.07252 -16.89098 -16.67017 -16.61619 -15.82752 -15.57797 -15.35505 -15.22562 -14.90816 -14.79030 -14.50081 -14.13893 -14.07605 -14.04949 -13.93300 -13.55478 -13.22060 -13.03825 -12.93459 -12.61580 -12.52051 -12.51055 -12.22199 -12.02046 -11.87628 -11.63058 -11.55706 -11.35448 -11.05362 -10.86093 -10.56050 -10.39684 -9.98691 -9.64830 -8.70859 -7.88161 -5.33999 0.00745 1.42902 1.48474 1.49541 1.55817 1.59672 1.66716 1.98735 2.05585 2.45529 2.52009 3.28026 3.55929 3.65693 3.77883 3.86779 3.95459 3.99188 4.04849 4.10282 4.13685 4.34061 4.46309 4.51258 4.61705 4.65021 4.81622 4.82363 4.85125 4.87268 4.92937 4.96838 5.04539 5.05960 5.15987 5.17332 5.29831 5.39403 5.47213 5.57344 5.64437 5.71511 5.81717 6.36811 6.38548 6.63556 6.95051 7.14271 7.32663 7.83729 8.36662 9.18895 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.041281 B = 0.001608 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.118251 B =17408.859881 C =17641.733879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.177 3.823 11 C -0.127 4.127 12 C 0.161 3.839 13 N -0.708 5.708 14 C 0.510 3.490 15 O -0.589 6.589 16 C -0.135 4.135 17 C 0.138 3.862 18 N -0.702 5.702 19 C 0.598 3.402 20 O -0.565 6.565 21 C -0.108 4.108 22 C -0.128 4.128 23 C -0.237 4.237 24 C 0.015 3.985 25 O -0.167 6.167 26 C -0.123 4.123 27 C 0.143 3.857 28 H 0.251 0.749 29 H -0.009 1.009 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.417 0.583 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.422 0.578 40 H 0.154 0.846 41 H 0.181 0.819 42 H 0.257 0.743 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.004 0.996 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.974 -24.860 22.860 34.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.167 4.167 12 C 0.055 3.945 13 N -0.360 5.360 14 C 0.298 3.702 15 O -0.470 6.470 16 C -0.175 4.175 17 C 0.013 3.987 18 N -0.354 5.354 19 C 0.386 3.614 20 O -0.446 6.446 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.256 4.256 24 C -0.054 4.054 25 O -0.062 6.062 26 C -0.163 4.163 27 C 0.016 3.984 28 H 0.060 0.940 29 H 0.010 0.990 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.255 0.745 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.260 0.740 40 H 0.172 0.828 41 H 0.199 0.801 42 H 0.273 0.727 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.022 0.978 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.416 -24.928 21.402 33.151 hybrid contribution 0.139 1.074 -0.179 1.098 sum 4.556 -23.854 21.223 32.252 Atomic orbital electron populations 1.70193 1.06730 1.25962 1.55293 1.25822 0.96027 1.01551 1.01053 0.85257 0.78154 0.79396 0.77482 1.21458 1.21728 1.19274 1.19521 0.92895 0.85857 1.41248 0.91498 1.44342 1.35959 1.02133 1.50758 1.20576 0.87606 0.97875 0.88873 1.22240 1.02087 0.93566 0.98774 1.20620 0.96990 0.88581 0.88266 1.46006 1.68373 1.05876 1.15702 1.21029 0.76113 0.83506 0.89571 1.90753 1.48191 1.79005 1.29008 1.21744 1.07649 0.90634 0.97459 1.20927 1.01654 0.87221 0.88850 1.45657 1.67957 1.05308 1.16465 1.16806 0.77208 0.82084 0.85338 1.90899 1.48966 1.79007 1.25747 1.21689 1.13959 0.95020 0.85347 1.22272 0.99697 0.92678 1.00289 1.22222 1.07986 1.02564 0.92803 1.25410 0.99318 0.81658 0.99017 1.84046 1.66054 1.36147 1.19944 1.22156 0.97950 0.98486 0.97723 1.20976 0.97242 0.86127 0.94015 0.94019 0.99042 0.91845 0.90373 0.90854 0.92795 0.74529 0.84563 0.84594 0.92348 0.92381 0.74005 0.82822 0.80131 0.72681 0.91216 0.92319 0.97836 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.08 11.19 21.65 0.24 -54.83 16 2 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 3 Si 0.97 44.22 29.59 68.60 2.03 46.25 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.27 -14.52 9.58 84.03 0.81 -13.72 16 8 H 0.07 3.57 7.88 -2.91 -0.02 3.54 16 9 N -0.61 -30.62 2.99 -699.11 -2.09 -32.72 16 10 C 0.18 8.37 5.30 86.36 0.46 8.83 16 11 C -0.13 -4.32 5.55 30.67 0.17 -4.15 16 12 C 0.16 5.21 2.42 45.02 0.11 5.32 16 13 N -0.71 -15.97 5.08 -442.41 -2.25 -18.22 16 14 C 0.51 12.22 7.79 87.66 0.68 12.90 16 15 O -0.59 -20.78 15.64 -3.04 -0.05 -20.83 16 16 C -0.14 -1.70 5.81 29.85 0.17 -1.53 16 17 C 0.14 2.69 4.96 86.38 0.43 3.12 16 18 N -0.70 -11.08 5.55 -467.11 -2.59 -13.67 16 19 C 0.60 13.31 7.79 86.44 0.67 13.98 16 20 O -0.57 -17.69 16.87 -4.36 -0.07 -17.76 16 21 C -0.11 -1.90 7.13 24.07 0.17 -1.73 16 22 C -0.13 -2.04 10.62 22.39 0.24 -1.80 16 23 C -0.24 -2.07 10.87 22.07 0.24 -1.83 16 24 C 0.02 0.09 12.08 67.10 0.81 0.90 16 25 O -0.17 -1.95 10.40 -5.08 -0.05 -2.00 16 26 C -0.12 -4.30 5.65 30.67 0.17 -4.12 16 27 C 0.14 6.21 6.52 86.36 0.56 6.77 16 28 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 29 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 30 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 34 H 0.42 6.12 8.60 -92.71 -0.80 5.33 16 35 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.14 0.86 8.14 -2.38 -0.02 0.85 16 37 H 0.06 1.44 8.10 -2.38 -0.02 1.42 16 38 H 0.06 1.43 8.10 -2.38 -0.02 1.41 16 39 H 0.42 3.57 8.23 -92.71 -0.76 2.81 16 40 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 42 H 0.26 -1.16 8.06 -2.91 -0.02 -1.19 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 46 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 Total: -1.00 -81.77 385.73 0.73 -81.04 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -0.55 Total: 12.14 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.11 Total: 20.62 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -6.69 Total: -119.44 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -0.17 Total: -40.60 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -81.77 0.73 -81.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230203697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.274 kcal (2) G-P(sol) polarization free energy of solvation -81.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds