Wall clock time and date at job start Tue Mar 31 2020 18:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99890 * 2 1 4 4 H 1.48498 * 109.46680 * 239.99862 * 3 2 1 5 5 H 1.48496 * 109.46939 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47298 * 119.99754 * 3 2 1 7 7 C 1.38949 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99448 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99518 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00709 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46843 * 110.99752 * 66.04687 * 13 12 10 15 15 C 1.53037 * 109.52380 * 185.83754 * 14 13 12 16 16 C 1.53120 * 109.28005 * 300.82188 * 15 14 13 17 17 C 1.53123 * 109.15662 * 57.65176 * 16 15 14 18 18 H 1.08995 * 109.50687 * 62.29115 * 17 16 15 19 19 N 1.46502 * 109.49932 * 182.36465 * 17 16 15 20 20 C 1.34771 * 120.00484 * 275.00188 * 19 17 16 21 21 O 1.21289 * 119.99460 * 359.97438 * 20 19 17 22 22 C 1.50702 * 120.00632 * 180.02562 * 20 19 17 23 23 C 1.50697 * 109.47402 * 179.97438 * 22 20 19 24 24 C 1.34520 * 125.79141 * 89.71145 * 23 22 20 25 25 C 1.41381 * 106.83885 * 179.89246 * 24 23 22 26 26 C 1.34511 * 106.84258 * 0.37078 * 25 24 23 27 27 O 1.34300 * 125.78864 * 270.02476 * 23 22 20 28 28 C 1.46851 * 110.99829 * 190.25614 * 13 12 10 29 29 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00213 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47103 * 60.00237 * 12 10 9 32 32 H 1.09000 * 109.47247 * 300.00115 * 12 10 9 33 33 H 1.09002 * 109.46627 * 305.85583 * 14 13 12 34 34 H 1.09004 * 109.46436 * 65.83473 * 14 13 12 35 35 H 1.09005 * 109.50037 * 60.76071 * 15 14 13 36 36 H 1.08998 * 109.50502 * 180.87519 * 15 14 13 37 37 H 1.08994 * 109.52195 * 177.55396 * 16 15 14 38 38 H 1.09001 * 109.52346 * 297.74567 * 16 15 14 39 39 H 0.97002 * 119.99774 * 95.00328 * 19 17 16 40 40 H 1.09003 * 109.46504 * 299.99549 * 22 20 19 41 41 H 1.09000 * 109.47213 * 59.99367 * 22 20 19 42 42 H 1.07997 * 126.57674 * 0.02564 * 24 23 22 43 43 H 1.08004 * 126.57872 * 180.16654 * 25 24 23 44 44 H 1.07999 * 125.79330 * 179.75556 * 26 25 24 45 45 H 1.08998 * 109.46520 * 294.17463 * 28 13 12 46 46 H 1.08993 * 109.46107 * 54.14758 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0011 12 6 1.2438 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 2.9634 -6.0172 1.2556 15 6 4.0436 -7.0973 1.1630 16 6 3.3814 -8.4539 0.9064 17 6 2.5520 -8.3733 -0.3782 18 1 3.2078 -8.1593 -1.2220 19 7 1.8697 -9.6505 -0.6007 20 6 2.5095 -10.6555 -1.2307 21 8 3.6500 -10.5024 -1.6138 22 6 1.8074 -11.9692 -1.4601 23 6 2.7342 -12.9152 -2.1791 24 6 3.5927 -13.7709 -1.5956 25 6 4.2556 -14.4599 -2.6371 26 6 3.7685 -13.9783 -3.7948 27 8 2.8474 -13.0429 -3.5112 28 6 1.5150 -7.2562 -0.2408 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 0.0016 31 1 0.6168 -4.9208 -0.8876 32 1 0.6175 -4.9204 0.8924 33 1 3.4326 -5.0478 1.4240 34 1 2.2926 -6.2448 2.0840 35 1 4.7230 -6.8632 0.3433 36 1 4.6011 -7.1356 2.0988 37 1 4.1497 -9.2192 0.7965 38 1 2.7317 -8.7063 1.7444 39 1 0.9574 -9.7727 -0.2946 40 1 1.5205 -12.4000 -0.5008 41 1 0.9162 -11.8040 -2.0654 42 1 3.7446 -13.9070 -0.5351 43 1 5.0108 -15.2238 -2.5248 44 1 4.0676 -14.2905 -4.7844 45 1 0.8509 -7.4779 0.5946 46 1 0.9322 -7.1868 -1.1593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265228981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:53 Heat of formation + Delta-G solvation = -51.269064 kcal Electronic energy + Delta-G solvation = -28138.621085 eV Core-core repulsion = 24029.944157 eV Total energy + Delta-G solvation = -4108.676928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.79548 -40.19856 -38.92806 -37.55298 -34.84110 -33.84756 -33.44441 -32.79612 -32.26234 -31.19732 -29.72096 -27.55985 -27.11104 -24.69240 -23.02601 -22.84741 -21.99753 -21.18233 -20.45382 -19.83748 -19.17817 -17.89939 -17.72802 -17.45356 -16.36763 -16.05754 -15.91494 -15.61637 -15.11523 -14.90444 -14.70120 -14.57954 -14.09277 -13.89116 -13.80098 -13.56186 -13.36761 -13.16575 -13.06256 -12.93190 -12.91298 -12.47394 -12.10425 -12.06138 -11.53695 -11.45452 -11.30644 -11.04398 -10.81631 -10.60675 -10.47401 -10.43010 -10.21210 -10.15263 -10.06303 -9.45526 -9.22274 -8.71287 -8.45009 -7.98167 -7.87035 -6.41498 -3.82198 1.44747 2.34848 2.38655 2.65778 3.01837 3.20492 3.26175 3.30774 3.90030 4.02624 4.22311 4.25322 4.53000 4.65073 4.75763 4.77851 4.82863 4.91413 4.96898 5.05131 5.12456 5.24881 5.30451 5.36719 5.55339 5.57492 5.62066 5.66049 5.70996 5.79467 5.83371 5.90127 5.98490 6.06794 6.10785 6.23981 6.25379 6.30275 6.47671 6.55729 6.88535 7.20944 7.29086 7.37841 7.55457 7.99514 8.06459 8.62044 9.18403 9.54509 10.06421 10.76143 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029790 B = 0.001809 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.694185 B =15472.206577 C =15640.175949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.576 6.576 12 C 0.048 3.952 13 N -0.511 5.511 14 C 0.050 3.950 15 C -0.111 4.111 16 C -0.128 4.128 17 C 0.149 3.851 18 H 0.099 0.901 19 N -0.725 5.725 20 C 0.514 3.486 21 O -0.523 6.523 22 C -0.061 4.061 23 C 0.004 3.996 24 C -0.196 4.196 25 C -0.214 4.214 26 C -0.037 4.037 27 O -0.172 6.172 28 C 0.051 3.949 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.022 0.978 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.399 0.601 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.202 0.798 45 H 0.034 0.966 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 -27.147 -0.424 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.460 6.460 12 C -0.083 4.083 13 N -0.236 5.236 14 C -0.077 4.077 15 C -0.149 4.149 16 C -0.166 4.166 17 C 0.045 3.955 18 H 0.117 0.883 19 N -0.377 5.377 20 C 0.299 3.701 21 O -0.398 6.398 22 C -0.101 4.101 23 C -0.046 4.046 24 C -0.215 4.215 25 C -0.233 4.233 26 C -0.105 4.105 27 O -0.068 6.068 28 C -0.078 4.078 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.040 0.960 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.233 0.767 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.219 0.781 45 H 0.052 0.948 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.111 -26.602 -1.298 26.634 hybrid contribution -1.166 0.483 0.884 1.541 sum -1.055 -26.118 -0.413 26.143 Atomic orbital electron populations 1.69605 1.05922 1.28233 1.50623 1.25256 0.95633 0.99703 0.97341 0.85917 0.78755 0.80474 0.79076 1.19891 1.21010 1.19936 1.19649 0.93345 0.82204 1.47628 0.87945 1.41853 1.09165 1.04566 1.64489 1.19705 0.88424 0.84503 0.84498 1.90494 1.13650 1.86830 1.54977 1.21836 0.93823 0.91119 1.01535 1.61375 1.25134 1.00716 1.36365 1.22319 0.95166 1.01848 0.88366 1.21507 0.98148 0.92980 1.02298 1.21970 0.99396 0.98546 0.96729 1.20973 0.94098 0.81095 0.99383 0.88262 1.45981 1.17784 1.13828 1.60076 1.20352 0.86983 0.85103 0.77700 1.90779 1.17729 1.81872 1.49432 1.20092 0.97359 0.91242 1.01417 1.21452 1.01917 1.00453 0.80812 1.21520 0.99370 1.00085 1.00526 1.21803 1.04610 1.04691 0.92232 1.24010 0.93376 0.92646 1.00461 1.83989 1.49694 1.48791 1.24327 1.22248 0.94853 0.89707 1.00971 0.91852 0.77515 0.89303 0.93413 0.87603 0.95968 0.90587 0.91425 0.91562 0.92340 0.76729 0.85897 0.86952 0.83630 0.83474 0.78102 0.94784 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.11 5.29 -10.97 -0.06 -14.17 16 10 C 0.44 10.30 7.46 -10.99 -0.08 10.22 16 11 O -0.58 -15.30 13.92 5.55 0.08 -15.22 16 12 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 13 N -0.51 -8.31 4.39 -236.11 -1.04 -9.35 16 14 C 0.05 0.80 5.11 -3.84 -0.02 0.78 16 15 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 16 C -0.13 -1.52 5.58 -26.61 -0.15 -1.66 16 17 C 0.15 1.77 2.61 -67.85 -0.18 1.59 16 18 H 0.10 1.50 7.58 -51.93 -0.39 1.11 16 19 N -0.72 -6.36 5.08 -53.73 -0.27 -6.64 16 20 C 0.51 5.41 7.79 -10.99 -0.09 5.32 16 21 O -0.52 -8.15 15.70 5.55 0.09 -8.06 16 22 C -0.06 -0.43 6.23 -29.04 -0.18 -0.61 16 23 C 0.00 0.04 5.81 -35.62 -0.21 -0.16 16 24 C -0.20 -1.90 10.81 -39.70 -0.43 -2.33 16 25 C -0.21 -1.91 10.91 -39.70 -0.43 -2.35 16 26 C -0.04 -0.33 12.09 29.41 0.36 0.03 16 27 O -0.17 -1.91 10.65 5.71 0.06 -1.85 16 28 C 0.05 0.62 4.93 -3.83 -0.02 0.60 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 31 H 0.09 1.39 7.98 -51.93 -0.41 0.97 16 32 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.11 2.08 5.80 -51.93 -0.30 1.78 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.40 2.12 8.60 -40.82 -0.35 1.77 16 40 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.20 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -35.31 383.79 -8.30 -43.61 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.78 Total: 10.90 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.86 Total: 2.64 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.64 Total: -53.81 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: 0.23 Total: -25.13 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.31 -8.30 -43.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265228981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.657 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds