Wall clock time and date at job start Tue Mar 31 2020 18:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99890 * 2 1 4 4 H 1.48498 * 109.46680 * 239.99862 * 3 2 1 5 5 H 1.48496 * 109.46939 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47298 * 119.99754 * 3 2 1 7 7 C 1.38949 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99448 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99518 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00709 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46843 * 110.99752 * 66.04687 * 13 12 10 15 15 C 1.53037 * 109.52380 * 185.83754 * 14 13 12 16 16 C 1.53120 * 109.28005 * 300.82188 * 15 14 13 17 17 C 1.53123 * 109.15662 * 57.65176 * 16 15 14 18 18 H 1.08995 * 109.50687 * 62.29115 * 17 16 15 19 19 N 1.46502 * 109.49932 * 182.36465 * 17 16 15 20 20 C 1.34771 * 120.00484 * 275.00188 * 19 17 16 21 21 O 1.21289 * 119.99460 * 359.97438 * 20 19 17 22 22 C 1.50702 * 120.00632 * 180.02562 * 20 19 17 23 23 C 1.50697 * 109.47402 * 179.97438 * 22 20 19 24 24 C 1.34520 * 125.79141 * 89.71145 * 23 22 20 25 25 C 1.41381 * 106.83885 * 179.89246 * 24 23 22 26 26 C 1.34511 * 106.84258 * 0.37078 * 25 24 23 27 27 O 1.34300 * 125.78864 * 270.02476 * 23 22 20 28 28 C 1.46851 * 110.99829 * 190.25614 * 13 12 10 29 29 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00213 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47103 * 60.00237 * 12 10 9 32 32 H 1.09000 * 109.47247 * 300.00115 * 12 10 9 33 33 H 1.09002 * 109.46627 * 305.85583 * 14 13 12 34 34 H 1.09004 * 109.46436 * 65.83473 * 14 13 12 35 35 H 1.09005 * 109.50037 * 60.76071 * 15 14 13 36 36 H 1.08998 * 109.50502 * 180.87519 * 15 14 13 37 37 H 1.08994 * 109.52195 * 177.55396 * 16 15 14 38 38 H 1.09001 * 109.52346 * 297.74567 * 16 15 14 39 39 H 0.97002 * 119.99774 * 95.00328 * 19 17 16 40 40 H 1.09003 * 109.46504 * 299.99549 * 22 20 19 41 41 H 1.09000 * 109.47213 * 59.99367 * 22 20 19 42 42 H 1.07997 * 126.57674 * 0.02564 * 24 23 22 43 43 H 1.08004 * 126.57872 * 180.16654 * 25 24 23 44 44 H 1.07999 * 125.79330 * 179.75556 * 26 25 24 45 45 H 1.08998 * 109.46520 * 294.17463 * 28 13 12 46 46 H 1.08993 * 109.46107 * 54.14758 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0011 12 6 1.2438 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 2.9634 -6.0172 1.2556 15 6 4.0436 -7.0973 1.1630 16 6 3.3814 -8.4539 0.9064 17 6 2.5520 -8.3733 -0.3782 18 1 3.2078 -8.1593 -1.2220 19 7 1.8697 -9.6505 -0.6007 20 6 2.5095 -10.6555 -1.2307 21 8 3.6500 -10.5024 -1.6138 22 6 1.8074 -11.9692 -1.4601 23 6 2.7342 -12.9152 -2.1791 24 6 3.5927 -13.7709 -1.5956 25 6 4.2556 -14.4599 -2.6371 26 6 3.7685 -13.9783 -3.7948 27 8 2.8474 -13.0429 -3.5112 28 6 1.5150 -7.2562 -0.2408 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 0.0016 31 1 0.6168 -4.9208 -0.8876 32 1 0.6175 -4.9204 0.8924 33 1 3.4326 -5.0478 1.4240 34 1 2.2926 -6.2448 2.0840 35 1 4.7230 -6.8632 0.3433 36 1 4.6011 -7.1356 2.0988 37 1 4.1497 -9.2192 0.7965 38 1 2.7317 -8.7063 1.7444 39 1 0.9574 -9.7727 -0.2946 40 1 1.5205 -12.4000 -0.5008 41 1 0.9162 -11.8040 -2.0654 42 1 3.7446 -13.9070 -0.5351 43 1 5.0108 -15.2238 -2.5248 44 1 4.0676 -14.2905 -4.7844 45 1 0.8509 -7.4779 0.5946 46 1 0.9322 -7.1868 -1.1593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265228981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:52 Heat of formation + Delta-G solvation = -78.440012 kcal Electronic energy + Delta-G solvation = -28139.799305 eV Core-core repulsion = 24029.944157 eV Total energy + Delta-G solvation = -4109.855148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.46346 -41.17318 -40.34133 -39.02189 -36.14083 -35.58379 -34.16994 -33.84921 -33.21923 -32.97717 -30.69702 -28.97045 -27.85885 -26.49807 -24.18957 -23.95882 -22.67133 -22.03194 -21.26580 -21.03385 -20.73897 -19.85179 -18.52716 -18.18410 -17.67630 -17.34848 -16.74522 -16.52662 -16.41251 -16.28150 -16.14346 -15.73781 -15.41642 -15.27064 -14.87341 -14.73351 -14.58452 -14.34195 -13.89684 -13.72641 -13.66952 -13.54762 -13.48188 -13.39055 -12.99719 -12.68678 -12.66403 -12.42037 -12.36075 -12.12871 -11.90588 -11.80971 -11.57761 -11.40798 -11.02921 -10.80588 -10.24895 -10.09113 -9.97747 -9.37179 -9.18263 -8.45000 -5.93111 0.76969 1.40045 1.41910 1.52397 1.61265 1.67596 2.00780 2.08205 2.24465 2.33341 2.90281 3.22077 3.39786 3.61532 3.71649 3.85756 3.96796 4.06497 4.16217 4.18160 4.19726 4.32673 4.36829 4.40603 4.44887 4.50805 4.55133 4.62164 4.63786 4.73213 4.90703 4.94361 5.00766 5.03044 5.05620 5.22836 5.26876 5.35813 5.42142 5.45927 5.63478 5.90368 6.09797 6.22040 6.24094 6.56572 6.63341 7.15329 7.27680 7.59255 8.15818 8.72048 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029790 B = 0.001809 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.694185 B =15472.206577 C =15640.175949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.615 6.615 12 C 0.062 3.938 13 N -0.538 5.538 14 C 0.055 3.945 15 C -0.107 4.107 16 C -0.117 4.117 17 C 0.155 3.845 18 H 0.059 0.941 19 N -0.706 5.706 20 C 0.512 3.488 21 O -0.582 6.582 22 C -0.052 4.052 23 C -0.018 4.018 24 C -0.212 4.212 25 C -0.230 4.230 26 C -0.047 4.047 27 O -0.195 6.195 28 C 0.057 3.943 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.421 0.579 40 H 0.162 0.838 41 H 0.139 0.861 42 H 0.158 0.842 43 H 0.165 0.835 44 H 0.232 0.768 45 H 0.067 0.933 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 -28.721 0.286 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.501 6.501 12 C -0.069 4.069 13 N -0.264 5.264 14 C -0.072 4.072 15 C -0.145 4.145 16 C -0.155 4.155 17 C 0.050 3.950 18 H 0.077 0.923 19 N -0.359 5.359 20 C 0.299 3.701 21 O -0.461 6.461 22 C -0.091 4.091 23 C -0.068 4.068 24 C -0.231 4.231 25 C -0.249 4.249 26 C -0.114 4.114 27 O -0.092 6.092 28 C -0.071 4.071 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.259 0.741 40 H 0.179 0.821 41 H 0.157 0.843 42 H 0.176 0.824 43 H 0.183 0.817 44 H 0.248 0.752 45 H 0.085 0.915 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.054 -28.204 -0.570 28.284 hybrid contribution -0.453 0.903 0.647 1.199 sum -2.507 -27.301 0.077 27.416 Atomic orbital electron populations 1.69660 1.06701 1.29260 1.50432 1.25990 0.96544 1.02252 0.96419 0.85023 0.77782 0.76902 0.78836 1.19978 1.19440 1.19762 1.19594 0.92629 0.84082 1.49861 0.90498 1.41913 1.09296 1.04620 1.65358 1.20832 0.88330 0.86028 0.82113 1.90478 1.15840 1.87762 1.56027 1.21695 0.93365 0.88078 1.03788 1.61260 1.25991 1.02314 1.36806 1.22159 0.95830 1.00065 0.89191 1.21446 0.97417 0.93755 1.01889 1.21864 0.99424 0.96639 0.97609 1.20666 0.93912 0.82597 0.97872 0.92262 1.45724 1.18533 1.12229 1.59382 1.21018 0.86337 0.86244 0.76485 1.90764 1.20493 1.82970 1.51857 1.20241 0.96884 0.88543 1.03454 1.22056 1.02833 1.01212 0.80667 1.21882 0.99466 1.00344 1.01453 1.22173 1.05154 1.05279 0.92302 1.24712 0.92714 0.91984 1.01965 1.83977 1.50488 1.49574 1.25135 1.22271 0.94804 0.87301 1.02762 0.91349 0.76963 0.87001 0.90803 0.92090 0.93773 0.93598 0.90024 0.92513 0.89668 0.74089 0.82064 0.84325 0.82385 0.81709 0.75174 0.91528 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -29.23 5.29 -306.99 -1.62 -30.85 16 10 C 0.44 20.75 7.46 87.66 0.65 21.40 16 11 O -0.62 -34.09 13.92 -3.06 -0.04 -34.13 16 12 C 0.06 2.04 5.45 85.56 0.47 2.51 16 13 N -0.54 -16.90 4.39 -900.92 -3.96 -20.85 16 14 C 0.06 1.73 5.11 86.33 0.44 2.18 16 15 C -0.11 -2.94 6.09 30.65 0.19 -2.76 16 16 C -0.12 -2.59 5.58 30.68 0.17 -2.42 16 17 C 0.16 3.45 2.61 45.04 0.12 3.57 16 18 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 19 N -0.71 -10.43 5.08 -442.28 -2.25 -12.67 16 20 C 0.51 9.93 7.79 87.66 0.68 10.61 16 21 O -0.58 -18.29 15.70 -3.06 -0.05 -18.34 16 22 C -0.05 -0.58 6.23 29.10 0.18 -0.40 16 23 C -0.02 -0.33 5.81 24.83 0.14 -0.19 16 24 C -0.21 -3.91 10.81 22.19 0.24 -3.67 16 25 C -0.23 -3.94 10.91 22.19 0.24 -3.70 16 26 C -0.05 -0.79 12.09 66.97 0.81 0.02 16 27 O -0.19 -4.21 10.65 -2.47 -0.03 -4.24 16 28 C 0.06 1.20 4.93 86.32 0.43 1.62 16 29 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.40 19.01 7.90 -92.71 -0.73 18.27 16 31 H 0.11 3.21 7.98 -2.38 -0.02 3.19 16 32 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 33 H 0.06 2.49 5.80 -2.39 -0.01 2.47 16 34 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.42 2.58 8.60 -92.71 -0.80 1.79 16 40 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 43 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.23 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.09 1.74 8.01 -2.39 -0.02 1.72 16 Total: -1.00 -81.72 383.79 -0.11 -81.83 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.52 Total: 32.60 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 6.04 Total: 10.54 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -7.54 Total: -113.44 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -0.12 Total: -56.71 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -81.72 -0.11 -81.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265228981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.387 kcal (2) G-P(sol) polarization free energy of solvation -81.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds