Wall clock time and date at job start Tue Mar 31 2020 18:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86807 * 119.99960 * 2 1 4 4 H 1.48493 * 109.47102 * 239.72200 * 3 2 1 5 5 H 1.48498 * 109.46806 * 359.72604 * 3 2 1 6 6 H 1.48501 * 109.46820 * 119.72112 * 3 2 1 7 7 C 1.38946 * 119.99955 * 179.72303 * 2 1 3 8 8 H 1.08006 * 120.00000 * 180.27611 * 7 2 1 9 9 N 1.37097 * 120.00413 * 0.27711 * 7 2 1 10 10 C 1.34780 * 120.00287 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99809 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99896 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.46973 * 180.02562 * 12 10 9 14 14 C 1.46846 * 111.00406 * 63.76652 * 13 12 10 15 15 C 1.53037 * 109.52806 * 174.16031 * 14 13 12 16 16 C 1.53112 * 109.27580 * 59.18021 * 15 14 13 17 17 C 1.53117 * 109.16338 * 302.34431 * 16 15 14 18 18 C 1.46848 * 111.00135 * 299.55372 * 13 12 10 19 19 H 1.09004 * 109.45639 * 65.82619 * 18 13 12 20 20 C 1.53000 * 109.46492 * 305.85648 * 18 13 12 21 21 N 1.46495 * 109.47196 * 305.70873 * 20 18 13 22 22 C 1.34778 * 120.00346 * 184.98534 * 21 20 18 23 23 O 1.21689 * 119.99657 * 359.97438 * 22 21 20 24 24 C 1.46651 * 120.00125 * 180.02562 * 22 21 20 25 25 C 1.36545 * 125.98928 * 180.02562 * 24 22 21 26 26 C 1.40365 * 106.71284 * 179.97438 * 25 24 22 27 27 C 1.35131 * 107.11316 * 359.97438 * 26 25 24 28 28 O 1.33934 * 108.76506 * 359.75350 * 27 26 25 29 29 H 0.97004 * 119.99947 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99954 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47431 * 300.00376 * 12 10 9 32 32 H 1.09002 * 109.47168 * 60.00597 * 12 10 9 33 33 H 1.09002 * 109.45957 * 294.18077 * 14 13 12 34 34 H 1.09001 * 109.45739 * 54.15352 * 14 13 12 35 35 H 1.08995 * 109.50293 * 179.12160 * 15 14 13 36 36 H 1.09004 * 109.50177 * 299.23601 * 15 14 13 37 37 H 1.08999 * 109.52606 * 62.25069 * 16 15 14 38 38 H 1.09008 * 109.52191 * 182.44254 * 16 15 14 39 39 H 1.09004 * 109.50845 * 177.60176 * 17 16 15 40 40 H 1.08999 * 109.50371 * 297.67913 * 17 16 15 41 41 H 1.08999 * 109.46635 * 65.70281 * 20 18 13 42 42 H 1.08996 * 109.46740 * 185.70271 * 20 18 13 43 43 H 0.97002 * 119.99958 * 4.97912 * 21 20 18 44 44 H 1.08004 * 126.63853 * 359.97438 * 25 24 22 45 45 H 1.07995 * 126.44315 * 179.97438 * 26 25 24 46 46 H 1.07996 * 125.61717 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1069 1.6935 -1.2090 5 1 1.2831 2.7464 -0.0067 6 1 3.0967 1.6994 1.2159 7 6 2.0088 -1.2033 0.0058 8 1 3.0888 -1.2033 0.0103 9 7 1.3234 -2.3906 0.0058 10 6 1.9973 -3.5578 0.0109 11 8 3.2102 -3.5578 0.0160 12 6 1.2438 -4.8629 0.0103 13 7 2.1984 -5.9794 0.0172 14 6 2.9954 -5.9830 1.2505 15 6 3.8725 -7.2364 1.2892 16 6 4.7922 -7.2478 0.0651 17 6 3.9389 -7.1949 -1.2052 18 6 3.0598 -5.9426 -1.1716 19 1 3.6925 -5.0557 -1.1342 20 6 2.1906 -5.8959 -2.4298 21 7 1.2450 -7.0146 -2.4118 22 6 0.4422 -7.2356 -3.4716 23 8 0.5026 -6.5055 -4.4433 24 6 -0.5049 -8.3552 -3.4533 25 6 -1.3706 -8.6902 -4.4546 26 6 -2.0801 -9.8185 -4.0142 27 6 -1.6216 -10.1193 -2.7791 28 8 -0.6686 -9.2388 -2.4470 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3534 -2.3907 0.0014 31 1 0.6134 -4.9189 0.8977 32 1 0.6210 -4.9225 -0.8822 33 1 3.6283 -5.0959 1.2765 34 1 2.3293 -5.9792 2.1133 35 1 4.4753 -7.2309 2.1973 36 1 3.2397 -8.1239 1.2773 37 1 5.4520 -6.3807 0.0971 38 1 5.3882 -8.1605 0.0657 39 1 4.5892 -7.1597 -2.0793 40 1 3.3077 -8.0819 -1.2567 41 1 1.6403 -4.9555 -2.4565 42 1 2.8253 -5.9708 -3.3127 43 1 1.1966 -7.5964 -1.6371 44 1 -1.4870 -8.1849 -5.4021 45 1 -2.8479 -10.3468 -4.5598 46 1 -1.9645 -10.9372 -2.1629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265639533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:49 Heat of formation + Delta-G solvation = -51.086972 kcal Electronic energy + Delta-G solvation = -29848.146984 eV Core-core repulsion = 25739.477953 eV Total energy + Delta-G solvation = -4108.669031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.84222 -40.20181 -39.06075 -37.54042 -34.84038 -34.46684 -33.26575 -33.00180 -31.35399 -31.16878 -29.88839 -27.48575 -26.30334 -24.39713 -23.30288 -22.79318 -21.95894 -21.29615 -20.48121 -19.87236 -19.17732 -18.66041 -17.92915 -16.54641 -16.51892 -16.31807 -16.04349 -15.54437 -15.35074 -14.57935 -14.51864 -14.30116 -14.15176 -13.85139 -13.81015 -13.73282 -13.21884 -13.18965 -13.08109 -12.86895 -12.75483 -12.27571 -11.89346 -11.76255 -11.40369 -11.28557 -11.11085 -10.70499 -10.59971 -10.32242 -10.27261 -10.24487 -10.21083 -10.11730 -9.92118 -9.53082 -9.32498 -9.13368 -8.78842 -8.09821 -7.54715 -6.81856 -3.95338 0.92456 2.15708 2.53261 3.14423 3.22533 3.26681 3.31425 3.51500 3.73099 4.13459 4.21585 4.54355 4.69050 4.75870 4.81294 4.89366 4.95521 5.06164 5.17962 5.34148 5.35224 5.43111 5.55285 5.60210 5.66270 5.69398 5.77385 5.81946 5.86639 5.92369 5.93450 6.03449 6.06209 6.10166 6.15435 6.23070 6.30894 6.34894 6.51460 6.63647 6.67393 7.22676 7.31851 7.53669 7.71926 8.01381 8.10956 8.50926 8.71310 9.39732 9.77175 10.60906 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.003390 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.380905 B = 8257.190837 C = 9857.402018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.007 4.007 3 Si 1.090 2.910 4 H -0.283 1.283 5 H -0.278 1.278 6 H -0.284 1.284 7 C -0.385 4.385 8 H 0.099 0.901 9 N -0.566 5.566 10 C 0.408 3.592 11 O -0.588 6.588 12 C 0.035 3.965 13 N -0.508 5.508 14 C 0.041 3.959 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.107 4.107 18 C 0.053 3.947 19 H 0.105 0.895 20 C 0.125 3.875 21 N -0.701 5.701 22 C 0.594 3.406 23 O -0.525 6.525 24 C -0.071 4.071 25 C -0.127 4.127 26 C -0.226 4.226 27 C -0.011 4.011 28 O -0.162 6.162 29 H 0.262 0.738 30 H 0.376 0.624 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.413 0.587 44 H 0.159 0.841 45 H 0.155 0.845 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 -20.975 -2.195 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.210 4.210 3 Si 0.916 3.084 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.210 1.210 7 C -0.514 4.514 8 H 0.117 0.883 9 N -0.202 5.202 10 C 0.194 3.806 11 O -0.475 6.475 12 C -0.096 4.096 13 N -0.232 5.232 14 C -0.087 4.087 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.145 4.145 18 C -0.056 4.056 19 H 0.123 0.877 20 C 0.001 3.999 21 N -0.352 5.352 22 C 0.380 3.620 23 O -0.404 6.404 24 C -0.123 4.123 25 C -0.148 4.148 26 C -0.245 4.245 27 C -0.081 4.081 28 O -0.056 6.056 29 H 0.074 0.926 30 H 0.209 0.791 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.250 0.750 44 H 0.177 0.823 45 H 0.173 0.827 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.464 -19.163 -2.599 19.344 hybrid contribution -0.356 -1.329 0.275 1.403 sum -0.820 -20.492 -2.324 20.639 Atomic orbital electron populations 1.70901 1.06559 1.29533 1.46357 1.26536 0.96510 1.02754 0.95220 0.83147 0.74496 0.73677 0.77077 1.20939 1.20326 1.21005 1.20540 0.94674 0.83981 1.52246 0.88318 1.42137 1.08305 1.05929 1.63820 1.20951 0.88823 0.85601 0.85189 1.90393 1.13762 1.86690 1.56683 1.22121 0.95686 0.88402 1.03436 1.62410 1.18089 1.40202 1.02492 1.22259 0.96473 0.98751 0.91206 1.21540 0.97531 0.98292 0.97582 1.21539 0.97810 1.01478 0.94801 1.21583 0.97586 0.97540 0.97769 1.22261 0.94344 1.00447 0.88532 0.87722 1.21579 0.91056 0.89073 0.98165 1.45882 1.38157 1.32385 1.18786 1.16618 0.79645 0.82142 0.83620 1.90897 1.68945 1.46598 1.33929 1.22217 1.04524 0.95980 0.89575 1.21983 0.95577 0.97130 1.00061 1.21855 1.05159 1.00384 0.97115 1.24392 0.91042 0.95156 0.97499 1.84090 1.47296 1.33859 1.40405 0.92646 0.79101 0.89450 0.89258 0.90853 0.91787 0.92040 0.91916 0.91823 0.92399 0.91789 0.91913 0.91091 0.90665 0.75046 0.82312 0.82713 0.77457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 13.68 55.50 0.76 -24.20 16 2 C -0.01 -0.18 5.50 -17.47 -0.10 -0.28 16 3 Si 1.09 24.13 29.92 -169.99 -5.09 19.04 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.38 -10.60 9.68 -14.93 -0.14 -10.74 16 8 H 0.10 2.87 7.16 -52.48 -0.38 2.49 16 9 N -0.57 -13.86 5.28 -10.96 -0.06 -13.92 16 10 C 0.41 9.03 7.14 -10.99 -0.08 8.95 16 11 O -0.59 -14.44 11.19 5.55 0.06 -14.38 16 12 C 0.04 0.60 5.33 -4.98 -0.03 0.57 16 13 N -0.51 -7.60 4.03 -228.13 -0.92 -8.52 16 14 C 0.04 0.61 5.06 -3.83 -0.02 0.60 16 15 C -0.11 -1.35 6.09 -26.65 -0.16 -1.52 16 16 C -0.12 -1.42 6.00 -26.61 -0.16 -1.58 16 17 C -0.11 -1.32 5.26 -26.65 -0.14 -1.46 16 18 C 0.05 0.79 1.66 -67.72 -0.11 0.68 16 19 H 0.11 1.99 5.54 -51.93 -0.29 1.70 16 20 C 0.12 1.89 4.55 -4.04 -0.02 1.87 16 21 N -0.70 -9.46 4.97 -61.63 -0.31 -9.76 16 22 C 0.59 8.84 7.79 -12.86 -0.10 8.74 16 23 O -0.53 -9.53 16.86 5.20 0.09 -9.45 16 24 C -0.07 -0.90 7.13 -36.80 -0.26 -1.16 16 25 C -0.13 -1.43 10.62 -39.39 -0.42 -1.85 16 26 C -0.23 -1.92 10.88 -39.89 -0.43 -2.36 16 27 C -0.01 -0.09 12.08 29.63 0.36 0.27 16 28 O -0.16 -1.75 10.40 4.99 0.05 -1.70 16 29 H 0.26 7.05 6.78 -40.82 -0.28 6.77 16 30 H 0.38 8.69 6.73 -40.82 -0.27 8.41 16 31 H 0.09 1.37 8.10 -51.93 -0.42 0.94 16 32 H 0.09 1.48 6.24 -51.93 -0.32 1.15 16 33 H 0.07 1.38 5.81 -51.93 -0.30 1.08 16 34 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.72 7.33 -51.93 -0.38 0.34 16 41 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.41 5.08 7.19 -40.82 -0.29 4.79 16 44 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 45 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.21 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -32.30 371.04 -7.93 -40.24 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -6.30 Total: 16.32 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.81 Total: 0.73 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.52 Total: -56.40 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: 0.20 Total: -25.52 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.09 Total: 19.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.30 -7.93 -40.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265639533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.850 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds