Wall clock time and date at job start Tue Mar 31 2020 18:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86807 * 119.99960 * 2 1 4 4 H 1.48493 * 109.47102 * 239.72200 * 3 2 1 5 5 H 1.48498 * 109.46806 * 359.72604 * 3 2 1 6 6 H 1.48501 * 109.46820 * 119.72112 * 3 2 1 7 7 C 1.38946 * 119.99955 * 179.72303 * 2 1 3 8 8 H 1.08006 * 120.00000 * 180.27611 * 7 2 1 9 9 N 1.37097 * 120.00413 * 0.27711 * 7 2 1 10 10 C 1.34780 * 120.00287 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99809 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99896 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.46973 * 180.02562 * 12 10 9 14 14 C 1.46846 * 111.00406 * 63.76652 * 13 12 10 15 15 C 1.53037 * 109.52806 * 174.16031 * 14 13 12 16 16 C 1.53112 * 109.27580 * 59.18021 * 15 14 13 17 17 C 1.53117 * 109.16338 * 302.34431 * 16 15 14 18 18 C 1.46848 * 111.00135 * 299.55372 * 13 12 10 19 19 H 1.09004 * 109.45639 * 65.82619 * 18 13 12 20 20 C 1.53000 * 109.46492 * 305.85648 * 18 13 12 21 21 N 1.46495 * 109.47196 * 305.70873 * 20 18 13 22 22 C 1.34778 * 120.00346 * 184.98534 * 21 20 18 23 23 O 1.21689 * 119.99657 * 359.97438 * 22 21 20 24 24 C 1.46651 * 120.00125 * 180.02562 * 22 21 20 25 25 C 1.36545 * 125.98928 * 180.02562 * 24 22 21 26 26 C 1.40365 * 106.71284 * 179.97438 * 25 24 22 27 27 C 1.35131 * 107.11316 * 359.97438 * 26 25 24 28 28 O 1.33934 * 108.76506 * 359.75350 * 27 26 25 29 29 H 0.97004 * 119.99947 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99954 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47431 * 300.00376 * 12 10 9 32 32 H 1.09002 * 109.47168 * 60.00597 * 12 10 9 33 33 H 1.09002 * 109.45957 * 294.18077 * 14 13 12 34 34 H 1.09001 * 109.45739 * 54.15352 * 14 13 12 35 35 H 1.08995 * 109.50293 * 179.12160 * 15 14 13 36 36 H 1.09004 * 109.50177 * 299.23601 * 15 14 13 37 37 H 1.08999 * 109.52606 * 62.25069 * 16 15 14 38 38 H 1.09008 * 109.52191 * 182.44254 * 16 15 14 39 39 H 1.09004 * 109.50845 * 177.60176 * 17 16 15 40 40 H 1.08999 * 109.50371 * 297.67913 * 17 16 15 41 41 H 1.08999 * 109.46635 * 65.70281 * 20 18 13 42 42 H 1.08996 * 109.46740 * 185.70271 * 20 18 13 43 43 H 0.97002 * 119.99958 * 4.97912 * 21 20 18 44 44 H 1.08004 * 126.63853 * 359.97438 * 25 24 22 45 45 H 1.07995 * 126.44315 * 179.97438 * 26 25 24 46 46 H 1.07996 * 125.61717 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1069 1.6935 -1.2090 5 1 1.2831 2.7464 -0.0067 6 1 3.0967 1.6994 1.2159 7 6 2.0088 -1.2033 0.0058 8 1 3.0888 -1.2033 0.0103 9 7 1.3234 -2.3906 0.0058 10 6 1.9973 -3.5578 0.0109 11 8 3.2102 -3.5578 0.0160 12 6 1.2438 -4.8629 0.0103 13 7 2.1984 -5.9794 0.0172 14 6 2.9954 -5.9830 1.2505 15 6 3.8725 -7.2364 1.2892 16 6 4.7922 -7.2478 0.0651 17 6 3.9389 -7.1949 -1.2052 18 6 3.0598 -5.9426 -1.1716 19 1 3.6925 -5.0557 -1.1342 20 6 2.1906 -5.8959 -2.4298 21 7 1.2450 -7.0146 -2.4118 22 6 0.4422 -7.2356 -3.4716 23 8 0.5026 -6.5055 -4.4433 24 6 -0.5049 -8.3552 -3.4533 25 6 -1.3706 -8.6902 -4.4546 26 6 -2.0801 -9.8185 -4.0142 27 6 -1.6216 -10.1193 -2.7791 28 8 -0.6686 -9.2388 -2.4470 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3534 -2.3907 0.0014 31 1 0.6134 -4.9189 0.8977 32 1 0.6210 -4.9225 -0.8822 33 1 3.6283 -5.0959 1.2765 34 1 2.3293 -5.9792 2.1133 35 1 4.4753 -7.2309 2.1973 36 1 3.2397 -8.1239 1.2773 37 1 5.4520 -6.3807 0.0971 38 1 5.3882 -8.1605 0.0657 39 1 4.5892 -7.1597 -2.0793 40 1 3.3077 -8.0819 -1.2567 41 1 1.6403 -4.9555 -2.4565 42 1 2.8253 -5.9708 -3.3127 43 1 1.1966 -7.5964 -1.6371 44 1 -1.4870 -8.1849 -5.4021 45 1 -2.8479 -10.3468 -4.5598 46 1 -1.9645 -10.9372 -2.1629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265639533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:48 Heat of formation + Delta-G solvation = -74.972392 kcal Electronic energy + Delta-G solvation = -29849.182734 eV Core-core repulsion = 25739.477953 eV Total energy + Delta-G solvation = -4109.704781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.61409 -41.59784 -40.39917 -39.11648 -36.42908 -35.98950 -34.36525 -34.01503 -33.16484 -32.48169 -30.75302 -28.94442 -27.52288 -26.25583 -24.28993 -24.07919 -22.73996 -22.48238 -21.60923 -21.36813 -20.53244 -19.92050 -19.59895 -18.08245 -17.48644 -17.38001 -17.24500 -16.86183 -16.74386 -16.20109 -15.74443 -15.67866 -15.55390 -15.37061 -15.32020 -14.86172 -14.45401 -14.12808 -14.02308 -13.91331 -13.60429 -13.53631 -13.39416 -13.22131 -12.98086 -12.85880 -12.67737 -12.07367 -11.96503 -11.94223 -11.61311 -11.57180 -11.39590 -11.30428 -11.22150 -11.04042 -11.03148 -10.30845 -10.12131 -9.62139 -9.11789 -8.95692 -6.10272 0.04008 1.44903 1.46956 1.50326 1.67071 1.78150 1.93085 2.08920 2.22388 2.38662 2.84238 3.02376 3.13107 3.61837 3.76208 3.79377 3.95649 3.97523 4.10404 4.13921 4.18824 4.25355 4.37623 4.42755 4.49936 4.57560 4.63867 4.68472 4.78177 4.87509 4.92694 4.97467 4.98035 5.08582 5.11767 5.20187 5.24735 5.27967 5.41877 5.51474 5.56856 5.85865 5.89065 5.92389 6.02368 6.45731 6.51187 6.70370 6.99810 7.39672 7.85944 8.50458 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.003390 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.380905 B = 8257.190837 C = 9857.402018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.043 4.043 3 Si 1.132 2.868 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.408 4.408 8 H 0.074 0.926 9 N -0.584 5.584 10 C 0.414 3.586 11 O -0.611 6.611 12 C 0.046 3.954 13 N -0.488 5.488 14 C 0.039 3.961 15 C -0.104 4.104 16 C -0.117 4.117 17 C -0.101 4.101 18 C 0.059 3.941 19 H 0.063 0.937 20 C 0.134 3.866 21 N -0.687 5.687 22 C 0.594 3.406 23 O -0.570 6.570 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.235 4.235 27 C 0.013 3.987 28 O -0.168 6.168 29 H 0.258 0.742 30 H 0.381 0.619 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.421 0.579 44 H 0.155 0.845 45 H 0.184 0.816 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 -24.322 -1.407 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.241 4.241 3 Si 0.952 3.048 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.092 0.908 9 N -0.222 5.222 10 C 0.202 3.798 11 O -0.498 6.498 12 C -0.086 4.086 13 N -0.211 5.211 14 C -0.089 4.089 15 C -0.142 4.142 16 C -0.155 4.155 17 C -0.138 4.138 18 C -0.050 4.050 19 H 0.081 0.919 20 C 0.010 3.990 21 N -0.339 5.339 22 C 0.382 3.618 23 O -0.452 6.452 24 C -0.158 4.158 25 C -0.150 4.150 26 C -0.253 4.253 27 C -0.057 4.057 28 O -0.063 6.063 29 H 0.069 0.931 30 H 0.215 0.785 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.092 0.908 43 H 0.260 0.740 44 H 0.172 0.828 45 H 0.201 0.799 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -1.223 -22.562 -1.784 22.665 hybrid contribution -0.136 -0.492 0.021 0.511 sum -1.359 -23.054 -1.763 23.161 Atomic orbital electron populations 1.70972 1.07068 1.29459 1.47943 1.27810 0.96663 1.05437 0.94196 0.82653 0.73850 0.70438 0.77889 1.19974 1.19763 1.19654 1.20502 0.93863 0.85729 1.53674 0.90785 1.42219 1.08558 1.05922 1.65513 1.22033 0.88819 0.86703 0.82292 1.90413 1.15314 1.87447 1.56597 1.22161 0.95873 0.85827 1.04772 1.62527 1.17767 1.38088 1.02704 1.22301 0.96446 0.98863 0.91258 1.21520 0.97330 0.97094 0.98209 1.21547 0.97663 1.01890 0.94399 1.21568 0.97435 0.96288 0.98551 1.22126 0.94027 1.00475 0.88371 0.91881 1.21322 0.90995 0.88461 0.98265 1.45680 1.37551 1.31692 1.18938 1.16908 0.79631 0.82340 0.82951 1.90862 1.70404 1.48482 1.35448 1.21704 1.05848 0.97035 0.91169 1.22251 0.95284 0.97835 0.99613 1.22208 1.05747 0.99620 0.97764 1.25413 0.88507 0.94274 0.97473 1.84077 1.48316 1.34042 1.39874 0.93076 0.78482 0.87177 0.88560 0.95029 0.90845 0.90735 0.89802 0.94044 0.89542 0.91126 0.90053 0.94206 0.90791 0.74020 0.82774 0.79900 0.72740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.02 13.68 21.66 0.30 -51.73 16 2 C -0.04 -2.34 5.50 84.93 0.47 -1.88 16 3 Si 1.13 49.27 29.92 68.60 2.05 51.32 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.41 -23.38 9.68 84.04 0.81 -22.56 16 8 H 0.07 4.53 7.16 -2.91 -0.02 4.50 16 9 N -0.58 -29.77 5.28 -306.98 -1.62 -31.39 16 10 C 0.41 19.00 7.14 87.66 0.63 19.63 16 11 O -0.61 -31.46 11.19 -3.07 -0.03 -31.49 16 12 C 0.05 1.55 5.33 85.56 0.46 2.00 16 13 N -0.49 -14.27 4.03 -875.66 -3.53 -17.80 16 14 C 0.04 1.14 5.06 86.33 0.44 1.58 16 15 C -0.10 -2.25 6.09 30.64 0.19 -2.07 16 16 C -0.12 -2.59 6.00 30.67 0.18 -2.40 16 17 C -0.10 -2.34 5.26 30.65 0.16 -2.17 16 18 C 0.06 1.79 1.66 44.94 0.07 1.86 16 19 H 0.06 2.52 5.54 -2.39 -0.01 2.51 16 20 C 0.13 4.19 4.55 86.38 0.39 4.58 16 21 N -0.69 -18.37 4.97 -467.13 -2.32 -20.69 16 22 C 0.59 17.87 7.79 86.44 0.67 18.55 16 23 O -0.57 -21.59 16.86 -4.31 -0.07 -21.66 16 24 C -0.11 -2.59 7.13 24.07 0.17 -2.41 16 25 C -0.13 -2.77 10.62 22.39 0.24 -2.53 16 26 C -0.23 -3.23 10.88 22.07 0.24 -2.99 16 27 C 0.01 0.15 12.08 67.10 0.81 0.96 16 28 O -0.17 -3.17 10.40 -5.07 -0.05 -3.22 16 29 H 0.26 14.29 6.78 -92.71 -0.63 13.66 16 30 H 0.38 18.31 6.73 -92.71 -0.62 17.68 16 31 H 0.11 3.30 8.10 -2.39 -0.02 3.28 16 32 H 0.10 3.21 6.24 -2.39 -0.01 3.19 16 33 H 0.03 1.21 5.81 -2.39 -0.01 1.20 16 34 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.63 7.33 -2.39 -0.02 1.61 16 41 H 0.04 1.49 6.62 -2.39 -0.02 1.48 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.42 9.69 7.19 -92.71 -0.67 9.03 16 44 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 45 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 46 H 0.26 0.22 8.06 -2.91 -0.02 0.20 16 Total: -1.00 -74.75 371.04 0.53 -74.22 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.12 Total: 42.29 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 5.93 Total: 10.15 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -7.18 Total: -121.61 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -0.16 Total: -56.38 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.05 Total: 51.32 kcal Total: -74.75 0.53 -74.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265639533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.752 kcal (2) G-P(sol) polarization free energy of solvation -74.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds